Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3775 Fragaria x ananassa HOM05D003116 ORTHO05D003619 7.7e-89 330.5 171 100.0
FAN09G4326 Fragaria x ananassa HOM05D003116 ORTHO05D003619 1.0e-56 223.8 121 92.6
FvH4_6g17270 Fragaria vesca HOM05D003116 ORTHO05D003619 2.8e-54 215.7 121 90.9
FAN05G5198 Fragaria x ananassa HOM05D003116 ORTHO05D003619 2.2e-51 206.1 108 95.4
FAN05G2101 Fragaria x ananassa HOM05D003116 ORTHO05D003619 9.6e-31 137.5 70 95.7
Dinv37361 Davidia involucrata HOM05D003116 ORTHO05D003619 4.6e-25 118.6 123 49.6
Duzib128G1204 Durio zibethinus HOM05D003116 ORTHO05D003619 4.3e-23 112.1 123 46.3
TAR636G1518 Trochodendron aralioides HOM05D003116 ORTHO05D003619 9.6e-23 110.9 136 47.1
TAR625G1207 Trochodendron aralioides HOM05D003116 ORTHO05D003619 1.3e-22 110.5 124 49.2
TAR636G1363 Trochodendron aralioides HOM05D003116 ORTHO05D003619 1.6e-22 110.2 124 48.4
TAR636G1994 Trochodendron aralioides HOM05D003116 ORTHO05D003619 1.4e-21 107.1 124 47.6
Thecc.05G075800 Theobroma cacao HOM05D003116 ORTHO05D003619 5.3e-21 105.1 122 45.9
COL.COLO4_22257 Corchorus olitorius HOM05D003116 ORTHO05D003619 4.9e-19 98.6 118 40.7
Aa31LG7G11540 Aethionema arabicum HOM05D003116 ORTHO05D003619 1.2e-17 94.0 128 39.8
CSS0019586 Camellia sinensis var. sinensis HOM05D003116 ORTHO05D003619 1.2e-17 94.0 123 41.5
AL7G25070 Arabidopsis lyrata HOM05D003116 ORTHO05D003619 2.7e-17 92.8 128 41.4
AT4G27650 Arabidopsis thaliana HOM05D003116 ORTHO05D003619 3.5e-17 92.4 128 40.6
A03p57410 Brassica napus HOM05D003116 ORTHO05D003619 4.6e-17 92.0 128 40.6
CARHR235350 Cardamine hirsuta HOM05D003116 ORTHO05D003619 4.6e-17 92.0 128 40.6
CSS0045595 Camellia sinensis var. sinensis HOM05D003116 ORTHO05D003619 6.0e-17 91.7 123 40.7
GSVIVG01033716001 Vitis vinifera HOM05D003116 ORTHO05D003619 6.0e-17 91.7 130 42.3
BcaC06g32676 Brassica carinata HOM05D003116 ORTHO05D003619 7.9e-17 91.3 128 39.8
A01p18940 Brassica napus HOM05D003116 ORTHO05D003619 7.9e-17 91.3 128 40.6
BraA03t14807Z Brassica rapa HOM05D003116 ORTHO05D003619 7.9e-17 91.3 128 40.6
Carub.0007s1320 Capsella rubella HOM05D003116 ORTHO05D003619 7.9e-17 91.3 128 40.6
AUR62031139 Chenopodium quinoa HOM05D003116 ORTHO05D003619 7.9e-17 91.3 115 47.0
Sp7g25620 Schrenkiella parvula HOM05D003116 ORTHO05D003619 7.9e-17 91.3 128 40.6
AUR62036544 Chenopodium quinoa HOM05D003116 ORTHO05D003619 1.0e-16 90.9 125 42.4
Thhalv10025473m.g Eutrema salsugineum HOM05D003116 ORTHO05D003619 1.0e-16 90.9 128 39.8
Peaxi162Scf00110g00082 Petunia axillaris HOM05D003116 ORTHO05D003619 1.3e-16 90.5 113 42.5
C07p55620 Brassica napus HOM05D003116 ORTHO05D003619 2.3e-16 89.7 128 39.8
BolC7t46042H Brassica oleracea HOM05D003116 ORTHO05D003619 2.3e-16 89.7 128 39.8
BraA01t01835Z Brassica rapa HOM05D003116 ORTHO05D003619 2.3e-16 89.7 128 40.6
Lalb_Chr25g0288771 Lupinus albus HOM05D003116 ORTHO05D003619 3.0e-16 89.4 119 42.9
MD12G1258200 Malus domestica HOM05D003116 ORTHO05D003619 3.0e-16 89.4 126 39.7
BcaNung01649 Brassica carinata HOM05D003116 ORTHO05D003619 3.9e-16 89.0 128 39.8
CiPaw.02G065200 Carya illinoinensis HOM05D003116 ORTHO05D003619 3.9e-16 89.0 126 40.5
CARHR168750 Cardamine hirsuta HOM05D003116 ORTHO05D003619 5.1e-16 88.6 126 41.3
TWI14G0774 Tripterygium wilfordii HOM05D003116 ORTHO05D003619 5.1e-16 88.6 126 39.7
Ciclev10023555m.g Citrus clementina HOM05D003116 ORTHO05D003619 6.7e-16 88.2 126 38.9
MD04G1241200 Malus domestica HOM05D003116 ORTHO05D003619 6.7e-16 88.2 126 38.9
PGR119G1776 Punica granatum HOM05D003116 ORTHO05D003619 6.7e-16 88.2 126 39.7
Atru.chr12.2147 Acer truncatum HOM05D003116 ORTHO05D003619 8.7e-16 87.8 126 38.9
arahy.Tifrunner.gnm1.ann1.9IK2W2 Arachis hypogaea HOM05D003116 ORTHO05D003619 8.7e-16 87.8 128 38.3
Cpa.g.sc123.22 Carica papaya HOM05D003116 ORTHO05D003619 1.9e-15 86.7 126 38.1
THA.LOC104821795 Tarenaya hassleriana HOM05D003116 ORTHO05D003619 1.9e-15 86.7 114 43.0
CDE02G2540 Ceratophyllum demersum HOM05D003116 ORTHO05D003619 2.5e-15 86.3 126 38.1
Ciclev10013675m.g Citrus clementina HOM05D003116 ORTHO05D003619 2.5e-15 86.3 126 38.9
Lalb_Chr06g0168431 Lupinus albus HOM05D003116 ORTHO05D003619 2.5e-15 86.3 128 37.5
AT3G58390 Arabidopsis thaliana HOM05D003116 ORTHO05D003619 3.3e-15 85.9 132 39.4
EL10Ac4g09413 Beta vulgaris HOM05D003116 ORTHO05D003619 3.3e-15 85.9 126 38.9
BolC8t48097H Brassica oleracea HOM05D003116 ORTHO05D003619 3.3e-15 85.9 138 40.6
Prupe.6G358700 Prunus persica HOM05D003116 ORTHO05D003619 3.3e-15 85.9 126 38.9
Ah.13g070600 Amaranthus hybridus HOM05D003116 ORTHO05D003619 4.3e-15 85.5 126 38.1
Aqoxy5G00402 Aquilegia oxysepala HOM05D003116 ORTHO05D003619 4.3e-15 85.5 126 36.5
Nn3g20158 Nelumbo nucifera HOM05D003116 ORTHO05D003619 4.3e-15 85.5 126 38.1
Hund07322 Selenicereus undatus HOM05D003116 ORTHO05D003619 4.3e-15 85.5 115 42.6
Sc25g0001690 Simmondsia chinensis HOM05D003116 ORTHO05D003619 4.3e-15 85.5 126 38.1
Sc25g0001710 Simmondsia chinensis HOM05D003116 ORTHO05D003619 4.3e-15 85.5 126 38.1
C01p23890 Brassica napus HOM05D003116 ORTHO05D003619 5.7e-15 85.1 128 39.8
MELO3C008594.2 Cucumis melo HOM05D003116 ORTHO05D003619 5.7e-15 85.1 126 39.7
CsaV3_2G010350 Cucumis sativus L. HOM05D003116 ORTHO05D003619 5.7e-15 85.1 126 39.7
Oeu033264.1 Olea europaea HOM05D003116 ORTHO05D003619 5.7e-15 85.1 127 39.4
Cfa006285 Carpinus fangiana HOM05D003116 ORTHO05D003619 7.4e-15 84.7 113 40.7
Manes.08G104900 Manihot esculenta HOM05D003116 ORTHO05D003619 7.4e-15 84.7 126 38.1
Medtr1g078400 Medicago truncatula HOM05D003116 ORTHO05D003619 7.4e-15 84.7 129 38.0
TAR636G0211 Trochodendron aralioides HOM05D003116 ORTHO05D003619 7.4e-15 84.7 123 39.8
Gorai.004G260600 Gossypium raimondii HOM05D003116 ORTHO05D003619 9.6e-15 84.3 126 38.1
TPR.G14663 Trifolium pratense HOM05D003116 ORTHO05D003619 9.6e-15 84.3 129 38.0
A08p10310 Brassica napus HOM05D003116 ORTHO05D003619 1.3e-14 84.0 126 41.3
BraA08t33029Z Brassica rapa HOM05D003116 ORTHO05D003619 1.3e-14 84.0 126 41.3
BraA08t33030Z Brassica rapa HOM05D003116 ORTHO05D003619 1.3e-14 84.0 126 41.3
CANSAT54G1522 Cannabis sativa HOM05D003116 ORTHO05D003619 1.3e-14 84.0 114 41.2
Duzib177G0648 Durio zibethinus HOM05D003116 ORTHO05D003619 1.3e-14 84.0 126 37.3
Gohir.D08G244300 Gossypium hirsutum HOM05D003116 ORTHO05D003619 1.3e-14 84.0 114 41.2
MBI11_g04280_MAGBIO Magnolia biondii HOM05D003116 ORTHO05D003619 1.3e-14 84.0 110 39.1
Nitab4.5_0009004g0010 Nicotiana tabacum HOM05D003116 ORTHO05D003619 1.3e-14 84.0 125 40.8
Potri.005G204500 Populus trichocarpa HOM05D003116 ORTHO05D003619 1.3e-14 84.0 115 41.7
Sabra05G0155200 Salix brachista HOM05D003116 ORTHO05D003619 1.3e-14 84.0 126 38.1
Lj5g0010554 Lotus japonicus HOM05D003116 ORTHO05D003619 1.6e-14 83.6 126 38.1
Peaxi162Scf00135g01111 Petunia axillaris HOM05D003116 ORTHO05D003619 1.6e-14 83.6 127 39.4
Thecc.05G204800 Theobroma cacao HOM05D003116 ORTHO05D003619 1.6e-14 83.6 126 36.5
GSVIVG01019146001 Vitis vinifera HOM05D003116 ORTHO05D003619 1.6e-14 83.6 126 38.1
AUR62000365 Chenopodium quinoa HOM05D003116 ORTHO05D003619 2.1e-14 83.2 126 38.1
AUR62006711 Chenopodium quinoa HOM05D003116 ORTHO05D003619 2.1e-14 83.2 126 38.1
AUR62006712 Chenopodium quinoa HOM05D003116 ORTHO05D003619 2.1e-14 83.2 126 38.1
PGSC0003DMG400025436 Solanum tuberosum HOM05D003116 ORTHO05D003619 2.1e-14 83.2 125 40.8
VMungo0720G2849 Vigna mungo HOM05D003116 ORTHO05D003619 2.1e-14 83.2 126 37.3
BcaC09g50563 Brassica carinata HOM05D003116 ORTHO05D003619 2.8e-14 82.8 128 37.5
Gohir.A08G224000 Gossypium hirsutum HOM05D003116 ORTHO05D003619 2.8e-14 82.8 126 37.3
HanXRQChr05g0156871 Helianthus annuus HOM05D003116 ORTHO05D003619 2.8e-14 82.8 129 38.8
Phvul.010G077790 Phaseolus vulgaris HOM05D003116 ORTHO05D003619 2.8e-14 82.8 126 36.5
arahy.Tifrunner.gnm1.ann1.6AR5V7 Arachis hypogaea HOM05D003116 ORTHO05D003619 3.7e-14 82.4 131 37.4
arahy.Tifrunner.gnm1.ann1.T6DYUJ Arachis hypogaea HOM05D003116 ORTHO05D003619 3.7e-14 82.4 127 41.7
BcaC07g37718 Brassica carinata HOM05D003116 ORTHO05D003619 3.7e-14 82.4 126 41.3
Eucgr.B01382 Eucalyptus grandis HOM05D003116 ORTHO05D003619 3.7e-14 82.4 126 35.7
Sed0012106 Sechium edule HOM05D003116 ORTHO05D003619 3.7e-14 82.4 127 37.8
Solyc04g009810.3 Solanum lycopersicum HOM05D003116 ORTHO05D003619 3.7e-14 82.4 125 40.0
TPR.G14646 Trifolium pratense HOM05D003116 ORTHO05D003619 3.7e-14 82.4 128 35.9
FvH4_6g00790 Fragaria vesca HOM05D003116 ORTHO05D003619 4.8e-14 82.0 115 40.9
FAN14G1801 Fragaria x ananassa HOM05D003116 ORTHO05D003619 4.8e-14 82.0 115 40.9
Glyma.10G170200 Glycine max HOM05D003116 ORTHO05D003619 4.8e-14 82.0 126 36.5
Glyma.20G219800 Glycine max HOM05D003116 ORTHO05D003619 4.8e-14 82.0 126 36.5
Sopen04g004940 Solanum pennellii HOM05D003116 ORTHO05D003619 4.8e-14 82.0 125 40.0
Actinidia38911 Actinidia chinensis HOM05D003116 ORTHO05D003619 6.2e-14 81.6 127 38.6
arahy.Tifrunner.gnm1.ann1.3K81QB Arachis hypogaea HOM05D003116 ORTHO05D003619 6.2e-14 81.6 127 41.7
Cc02_g09220 Coffea canephora HOM05D003116 ORTHO05D003619 6.2e-14 81.6 127 37.8
CSS0019916 Camellia sinensis var. sinensis HOM05D003116 ORTHO05D003619 8.2e-14 81.3 127 37.0
ClCG11G007480 Citrullus lanatus HOM05D003116 ORTHO05D003619 8.2e-14 81.3 137 38.0
Lsat_1_v5_gn_8_2981 Lactuca sativa HOM05D003116 ORTHO05D003619 8.2e-14 81.3 127 37.8
SGA_v2.0_scaffold7G04085 Striga asiatica HOM05D003116 ORTHO05D003619 8.2e-14 81.3 115 40.0
Medtr7g102760 Medicago truncatula HOM05D003116 ORTHO05D003619 1.1e-13 80.9 138 38.4
Nitab4.5_0007901g0020 Nicotiana tabacum HOM05D003116 ORTHO05D003619 1.1e-13 80.9 125 39.2
Rhsim09G0131200 Rhododendron simsii HOM05D003116 ORTHO05D003619 1.1e-13 80.9 126 35.7
RcHm_v2.0_Chr3g0448271 Rosa chinensis HOM05D003116 ORTHO05D003619 1.1e-13 80.9 126 37.3
MSTRG.9020 Avicennia marina HOM05D003116 ORTHO05D003619 1.4e-13 80.5 115 40.9
BcaB04g18111 Brassica carinata HOM05D003116 ORTHO05D003619 1.4e-13 80.5 122 39.3
CAN.G186.68 Capsicum annuum HOM05D003116 ORTHO05D003619 1.4e-13 80.5 125 39.2
FAN02G4520 Fragaria x ananassa HOM05D003116 ORTHO05D003619 1.4e-13 80.5 115 40.0
Os04g0659900 Oryza sativa ssp. japonica HOM05D003116 ORTHO05D003619 1.4e-13 80.5 123 38.2
HPP92_011793 Vanilla planifolia HOM05D003116 ORTHO05D003619 1.4e-13 80.5 123 37.4
Zm00001eb067580 Zea mays HOM05D003116 ORTHO05D003619 1.4e-13 80.5 123 37.4
SEGI_30925 Sequoiadendron giganteum HOM05D003116 ORTHO05D003619 1.8e-13 80.1 123 35.8
vmacro10396 Vaccinium macrocarpon HOM05D003116 ORTHO05D003619 1.8e-13 80.1 113 38.1
FAN09G4293 Fragaria x ananassa HOM05D003116 ORTHO05D003619 2.4e-13 79.7 115 40.9
arahy.Tifrunner.gnm1.ann1.U29Z63 Arachis hypogaea HOM05D003116 ORTHO05D003619 4.1e-13 79.0 127 40.2
ECA233G1402 Erigeron canadensis HOM05D003116 ORTHO05D003619 4.1e-13 79.0 127 37.8
Hma1.2p1_0171F.1_g075610 Hydrangea macrophylla HOM05D003116 ORTHO05D003619 4.1e-13 79.0 127 35.4
Lj7C705G3 Lonicera japonica HOM05D003116 ORTHO05D003619 4.1e-13 79.0 120 38.3
ATR0609G064 Amborella trichopoda HOM05D003116 ORTHO05D003619 5.3e-13 78.6 123 36.6
arahy.Tifrunner.gnm1.ann1.PEQF49 Arachis hypogaea HOM05D000048 ORTHO05D003619 5.3e-13 78.6 113 41.6
Migut.F01553 Erythranthe guttata HOM05D003116 ORTHO05D003619 6.9e-13 78.2 112 40.2
EL10Ac1g01549 Beta vulgaris HOM05D003116 ORTHO05D003619 9.0e-13 77.8 129 36.4
Duzib128G0562 Durio zibethinus HOM05D003116 ORTHO05D003619 1.2e-12 77.4 116 40.5
Mapoly0014s0040 Marchantia polymorpha HOM05D003116 ORTHO05D003619 1.2e-12 77.4 124 37.1
PSO357G0261 Papaver somniferum HOM05D003116 ORTHO05D003619 1.2e-12 77.4 126 34.1
Psat6g052120 Pisum sativum HOM05D003116 ORTHO05D003619 1.2e-12 77.4 129 35.7
RcHm_v2.0_Chr4g0442151 Rosa chinensis HOM05D003116 ORTHO05D003619 1.2e-12 77.4 126 34.1
FAN05G0861 Fragaria x ananassa HOM05D003116 ORTHO05D003619 2.0e-12 76.6 118 39.8
Sed0017776 Sechium edule HOM05D003116 ORTHO05D003619 2.6e-12 76.3 134 36.6
BolC1t02337H Brassica oleracea HOM05D003116 ORTHO05D003619 3.4e-12 75.9 93 44.1
Actinidia29561 Actinidia chinensis HOM05D003116 ORTHO05D003619 4.5e-12 75.5 126 35.7
Psat3g038280 Pisum sativum HOM05D003116 ORTHO05D003619 4.5e-12 75.5 123 38.2
Haze_04522 Corylus avellana HOM05D003116 ORTHO05D003619 5.8e-12 75.1 102 42.2
Pp3c4_11130 Physcomitrium patens HOM05D003116 ORTHO05D003619 7.6e-12 74.7 124 37.1
Potri.004G092600 Populus trichocarpa HOM05D003116 ORTHO05D003619 7.6e-12 74.7 98 39.8
Aa31LG7G11530 Aethionema arabicum HOM05D003116 ORTHO05D003619 1.3e-11 73.9 128 32.8
Dinv36343 Davidia involucrata HOM05D003116 ORTHO05D003619 1.3e-11 73.9 105 41.9
PSO210G3889 Papaver somniferum HOM05D003116 ORTHO05D003619 1.7e-11 73.6 123 33.3
CBR_g24366 Chara braunii HOM05D003116 ORTHO05D003619 2.2e-11 73.2 123 30.9
AagrBONN_evm.TU.Sc2ySwM_344.2897 Anthoceros agrestis HOM05D003116 ORTHO05D003619 2.9e-11 72.8 122 36.9
Aqoxy2G00490 Aquilegia oxysepala HOM05D003116 ORTHO05D003619 2.9e-11 72.8 130 34.6
Solyc10g083770.3 Solanum lycopersicum HOM05D003116 ORTHO05D003619 2.9e-11 72.8 124 32.3
FAN07G2794 Fragaria x ananassa HOM05D003116 ORTHO05D003619 3.8e-11 72.4 127 34.6
FAN17G2384 Fragaria x ananassa HOM05D003116 ORTHO05D003619 3.8e-11 72.4 127 35.4
SalBow8G0641 Salvia bowleyana HOM05D003116 ORTHO05D003619 5.0e-11 72.0 101 41.6
arahy.Tifrunner.gnm1.ann1.3K1ZLN Arachis hypogaea HOM05D003116 ORTHO05D003619 6.5e-11 71.6 93 46.2
AagrBONN_evm.TU.Sc2ySwM_228.5685 Anthoceros agrestis HOM05D003116 ORTHO05D003619 8.4e-11 71.2 138 37.7
Glyma.19G188500 Glycine max HOM05D003116 ORTHO05D003619 8.4e-11 71.2 102 40.2
PGSC0003DMG400028274 Solanum tuberosum HOM05D003116 ORTHO05D003619 8.4e-11 71.2 122 32.8
FvH4_4g33100 Fragaria vesca HOM05D003116 ORTHO05D003619 1.1e-10 70.9 127 34.6
FAN12G0407 Fragaria x ananassa HOM05D003116 ORTHO05D003619 1.1e-10 70.9 127 34.6
FAN22G1543 Fragaria x ananassa HOM05D003116 ORTHO05D003619 1.1e-10 70.9 127 34.6
Ca_09971_v3 Cicer arietinum L. HOM05D003116 ORTHO05D003619 2.5e-10 69.7 112 38.4
Aqoxy2G04101 Aquilegia oxysepala HOM05D003116 ORTHO05D003619 4.2e-10 68.9 137 31.4
unitig_748.g8763 Utricularia gibba HOM05D003116 ORTHO05D003619 1.6e-09 67.0 63 46.0
Gohir.A04G068200 Gossypium hirsutum HOM05D003116 ORTHO05D003619 3.5e-09 65.9 114 35.1
Phvul.001G183700 Phaseolus vulgaris HOM05D003116 ORTHO05D003619 3.5e-09 65.9 103 36.9
QL07p043239 Quercus lobata HOM05D003116 ORTHO05D003619 4.6e-09 65.5 55 56.4
Cre09.g388615 Chlamydomonas reinhardtii HOM05D003116 ORTHO05D003619 6.1e-09 65.1 140 32.1
SMO356G0619 Selaginella moellendorffii HOM05D003116 ORTHO05D003619 6.1e-09 65.1 124 29.8
ATR0743G097 Amborella trichopoda HOM05D003116 ORTHO05D003619 1.3e-08 63.9 112 33.9
Lj1g0028191 Lotus japonicus HOM05D003116 ORTHO05D003619 1.3e-08 63.9 114 37.7
DCAR_014783 Daucus carota HOM05D003116 ORTHO05D003619 6.7e-08 61.6 89 40.4
DCAR_023104 Daucus carota HOM05D003116 ORTHO05D003619 8.7e-08 61.2 135 34.8
RcHm_v2.0_Chr3g0471381 Rosa chinensis HOM05D003116 ORTHO05D003619 1.5e-07 60.5 37 81.1
PRCOL_00002239 Prasinoderma coloniale HOM05D003116 ORTHO05D003619 7.4e-07 58.2 124 31.5
FAN14G5565 Fragaria x ananassa HOM05D003116 ORTHO05D003619 1.3e-06 57.4 33 87.9
VMungo1383G1045 Vigna mungo HOM05D003116 ORTHO05D003619 1.3e-06 57.4 103 34.0
TAR636G2277 Trochodendron aralioides HOM05D003116 ORTHO05D003619 8.2e-06 54.7 100 37.0


User provided reference genes

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