Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 2000.7 1012 100.0
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1983.8 1012 99.1
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1967.6 1012 98.4
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1924.4 1012 96.7
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1897.5 1012 95.1
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1816.6 1012 90.3
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1786.9 1013 89.2
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1783.5 1012 89.1
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1749.6 1013 86.8
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1737.2 1012 86.4
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1734.9 1012 85.5
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1729.1 1012 85.4
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1724.5 1009 85.5
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1724.5 1012 85.7
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1721.8 1012 84.9
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1719.1 1012 85.1
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1714.5 1012 85.0
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1709.9 1012 83.7
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1705.3 1013 83.9
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1703.3 1013 84.2
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1703.0 1012 83.9
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1701.8 1012 83.6
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1700.6 1012 83.7
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1694.5 1012 83.9
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1692.6 1013 83.7
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1692.6 1013 83.5
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1688.7 1014 83.1
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1687.2 1013 83.1
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1686.8 1009 83.6
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1684.1 1022 82.8
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1682.5 1013 83.2
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1681.4 1107 78.1
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1675.6 1047 81.0
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1672.5 1010 82.5
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1664.0 1012 82.4
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1663.3 1039 81.1
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1661.7 1011 82.1
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1660.2 1021 81.9
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1656.3 1013 82.1
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1653.3 1078 78.5
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1653.3 1009 81.6
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1649.8 1019 81.6
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1647.9 1012 80.9
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1646.7 1029 80.8
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1644.4 1006 81.4
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1644.4 1012 80.8
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1642.5 1010 81.1
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1642.1 1013 80.3
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1640.6 1014 81.9
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1640.2 1011 81.5
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1635.9 1013 80.3
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1632.8 1013 80.1
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1630.5 1013 81.3
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1629.4 1013 79.7
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1627.5 1015 80.9
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1626.7 1014 79.7
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1624.4 1013 79.6
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1624.0 1015 79.2
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1622.1 1015 80.5
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1619.4 1015 79.1
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1619.4 1013 79.5
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1617.8 1014 80.4
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1615.5 1008 80.1
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1615.1 1014 79.0
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1615.1 1016 79.1
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1614.4 1013 79.1
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1614.0 1015 80.3
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1613.6 1012 81.3
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1612.0 1013 79.6
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1610.5 1013 79.0
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1610.5 1017 78.7
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1610.5 1009 79.3
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1598.9 1013 80.1
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1597.0 1047 78.8
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1595.9 956 83.5
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1586.6 1013 78.0
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1585.5 1016 79.5
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1577.8 1013 77.8
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1577.0 1010 78.1
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1575.8 1000 78.9
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1575.1 1014 78.6
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1572.4 1048 75.7
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1568.9 1013 77.7
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1537.7 1011 76.3
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1537.7 961 80.6
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1527.3 951 82.0
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1526.1 1018 75.1
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1493.8 1013 75.3
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1474.1 1013 74.1
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1450.6 920 78.6
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1437.9 870 82.2
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1424.5 1007 70.9
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1394.0 1018 69.6
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1383.2 841 83.2
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1374.0 809 85.9
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1364.4 816 84.3
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 0.0e+00 1332.0 809 83.4
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1323.5 1020 70.0
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1318.9 878 76.5
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1312.4 795 83.4
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1308.9 765 85.5
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1304.3 817 81.5
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1273.8 976 67.5
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1253.8 759 83.0
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1210.3 778 80.1
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 0.0e+00 1169.8 1014 58.7
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 0.0e+00 1153.3 1025 58.3
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1145.2 762 77.4
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 1.2e-293 1013.4 1006 51.6
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 2.6e-293 1012.3 671 78.4
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 6.7e-289 997.7 663 76.0
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 2.4e-286 989.2 556 89.2
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.0e-285 986.1 635 77.5
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 2.9e-284 982.2 814 61.1
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.0e-249 867.5 598 73.4
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 1.4e-249 867.1 543 80.1
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 8.2e-247 857.8 635 67.9
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 4.5e-245 852.0 517 83.4
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 4.7e-202 709.1 442 78.5
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 4.8e-162 576.2 360 79.4
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 6.0e-157 559.3 336 83.0
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 5.3e-145 519.6 282 90.4
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 1.6e-120 438.3 1086 30.8
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 2.7e-117 427.6 249 85.5
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 4.9e-106 390.2 229 80.3
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 2.3e-103 381.3 268 74.3
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 1.9e-102 378.3 1016 28.3
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 1.2e-101 375.6 229 76.4
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 1.5e-99 368.6 1275 27.2
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 8.3e-98 362.8 204 84.8
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 7.3e-94 349.7 207 79.2
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 3.5e-88 330.9 229 69.4
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 6.4e-82 310.1 198 77.3
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 4.1e-81 307.4 178 79.2
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 1.0e-79 302.8 302 54.6
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 4.4e-75 287.3 211 68.2
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 8.1e-69 266.5 153 81.7
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 1.2e-64 252.7 464 36.0
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 7.6e-59 233.4 152 74.3
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 8.4e-58 229.9 127 82.7
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 1.2e-51 209.5 135 73.3
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 6.2e-45 187.2 120 75.0
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 6.5e-42 177.2 163 60.1
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 8.4e-42 176.8 174 61.5
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 9.7e-38 163.3 129 63.6
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.6e-37 162.5 106 73.6
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 7.7e-35 153.7 94 77.7
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 1.7e-34 152.5 88 83.0
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.7e-30 137.5 73 94.5
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 6.3e-29 134.0 99 68.7
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 9.1e-28 130.2 131 59.5
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 2.0e-27 129.0 127 59.8
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 2.6e-27 128.6 75 85.3
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.2e-26 125.6 81 70.4
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 4.7e-24 117.9 75 76.0
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.0e-22 112.5 92 65.2
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 4.4e-22 111.3 91 65.9
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 7.4e-22 110.5 80 78.8
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 1.6e-19 102.8 52 92.3
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.0e-15 90.1 54 77.8
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 5.2e-15 87.8 87 50.6
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 8.8e-15 87.0 117 41.0
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 2.0e-14 85.9 100 49.0
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 4.8e-13 81.3 160 36.2
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 4.8e-13 81.3 231 24.2
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.6e-11 76.3 48 62.5
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 6.1e-08 64.3 61 57.4
TPR.G27092 Trifolium pratense HOM05D004263 ORTHO05D004931 1.8e-07 62.8 45 66.7


User provided reference genes

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