Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 0.0e+00 1258.8 695 100.0
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 0.0e+00 1184.9 695 95.0
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 0.0e+00 1182.9 695 94.8
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 0.0e+00 1163.3 696 93.8
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 0.0e+00 1153.3 697 92.5
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 0.0e+00 1139.8 704 92.3
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 3.5e-273 944.9 716 79.7
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 1.1e-271 939.9 716 78.8
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 7.6e-260 900.6 714 77.0
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 3.4e-252 875.2 703 76.4
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 7.0e-213 744.6 605 74.2
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 5.0e-211 738.4 719 65.9
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 3.7e-206 722.2 588 73.1
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 4.8e-206 721.8 585 73.0
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 1.1e-205 720.7 710 65.6
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 1.7e-203 713.4 536 74.3
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.9e-203 712.6 698 66.0
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 3.2e-202 709.1 734 64.9
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 3.2e-202 709.1 522 74.5
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 7.2e-202 708.0 747 64.7
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.6e-201 706.8 737 64.6
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 3.6e-201 705.7 532 72.9
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 3.0e-200 702.6 518 73.7
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 5.2e-200 701.8 522 73.9
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 2.6e-199 699.5 518 73.6
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 1.3e-198 697.2 724 62.4
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 1.3e-198 697.2 720 62.6
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.3e-198 697.2 519 72.3
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 3.7e-198 695.7 529 69.9
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 1.8e-197 693.3 712 60.5
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 1.2e-196 690.6 700 63.0
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 1.6e-196 690.3 703 61.5
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 7.2e-194 681.4 524 73.1
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 1.2e-193 680.6 524 73.1
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 3.6e-193 679.1 526 72.8
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 6.1e-193 678.3 703 62.3
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 8.0e-193 677.9 741 62.5
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 1.8e-192 676.8 537 70.0
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 3.0e-192 676.0 532 70.5
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 7.5e-191 671.4 542 69.6
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 5.0e-187 658.7 698 61.7
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 4.3e-186 655.6 517 71.2
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 8.0e-185 651.4 534 68.4
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 1.0e-184 651.0 708 60.5
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 1.8e-184 650.2 449 74.4
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 5.2e-184 648.7 449 74.8
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.2e-183 647.5 649 66.1
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 2.0e-183 646.7 517 67.7
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 2.6e-183 646.4 521 67.0
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 3.4e-183 646.0 525 66.1
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 3.7e-182 642.5 522 66.7
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 4.1e-181 639.0 727 60.1
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 5.4e-181 638.6 531 67.4
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 7.0e-181 638.3 712 60.0
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 2.3e-179 633.3 765 58.3
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 5.0e-179 632.1 710 61.5
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 2.5e-178 629.8 524 68.5
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 2.1e-177 626.7 705 59.4
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 2.3e-176 623.2 551 64.1
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 1.2e-175 620.9 718 60.2
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 7.5e-175 618.2 728 57.1
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 1.3e-174 617.5 402 77.6
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 1.9e-173 613.6 542 66.6
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 1.6e-172 610.5 490 67.1
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 1.6e-172 610.5 531 66.1
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 7.8e-172 608.2 529 66.5
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 5.1e-171 605.5 717 56.3
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 6.6e-171 605.1 707 60.5
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 8.6e-171 604.7 709 59.2
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 1.1e-170 604.4 544 63.1
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 2.5e-170 603.2 717 56.9
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 7.3e-170 601.7 750 57.5
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 1.5e-167 594.0 716 55.2
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 2.0e-167 593.6 520 63.5
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 2.0e-167 593.6 425 72.2
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 2.6e-167 593.2 422 72.0
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 3.4e-167 592.8 495 65.5
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 7.6e-167 591.7 449 69.9
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 7.6e-167 591.7 723 56.7
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 2.9e-166 589.7 528 65.3
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 4.1e-165 585.9 445 69.0
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 6.6e-163 578.6 623 59.9
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 7.3e-162 575.1 394 75.1
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 9.6e-162 574.7 450 66.9
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 9.6e-162 574.7 721 54.5
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 1.4e-160 570.9 687 55.5
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 2.9e-158 563.1 468 65.8
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 4.9e-158 562.4 711 54.6
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 6.4e-158 562.0 710 56.1
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 1.9e-157 560.5 510 61.6
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 9.3e-157 558.1 703 55.9
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 5.6e-154 548.9 437 64.5
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 1.6e-153 547.4 434 65.2
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 2.4e-152 543.5 592 64.4
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 1.7e-150 537.3 716 51.7
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 2.2e-150 537.0 722 54.7
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 1.9e-149 533.9 531 57.8
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.9e-149 533.9 514 59.1
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 2.4e-149 533.5 448 62.7
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 4.6e-148 529.3 515 60.8
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 2.3e-147 526.9 725 51.3
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 2.5e-146 523.5 372 70.4
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 4.8e-145 519.2 446 63.2
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 3.1e-144 516.5 528 59.3
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 4.9e-142 509.2 528 56.4
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 1.9e-141 507.3 455 60.9
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 2.1e-140 503.8 469 58.8
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 3.0e-139 500.0 710 50.0
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 2.2e-134 483.8 407 61.9
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.4e-128 464.5 373 64.6
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 9.3e-125 451.8 441 58.0
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 6.7e-123 445.7 571 56.2
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 1.1e-117 428.3 327 66.4
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 1.5e-106 391.3 488 48.6
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 1.3e-105 388.3 350 59.7
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 1.7e-105 387.9 406 53.2
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.4e-104 384.8 350 60.6
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 4.5e-103 379.8 420 51.9
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 3.0e-99 367.1 414 49.8
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.4e-96 357.5 441 49.4
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 2.7e-92 344.0 484 47.7
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 3.4e-90 337.0 214 79.0
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 1.8e-88 331.3 307 66.1
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 1.2e-87 328.6 450 58.9
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 2.7e-79 300.8 497 42.3
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 1.6e-76 291.6 370 46.5
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 2.3e-75 287.7 401 46.4
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 8.6e-70 269.2 210 66.7
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 1.6e-68 265.0 190 70.5
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 6.8e-51 206.5 186 57.0
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 6.2e-44 183.3 204 52.0
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.2e-42 179.1 536 29.5
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 1.3e-41 175.6 189 56.6
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 1.7e-38 165.2 170 55.3
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 2.6e-34 151.4 125 62.4
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 7.6e-34 149.8 125 61.6
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 1.1e-29 136.0 396 29.8
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 1.2e-26 125.9 95 65.3
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 2.9e-25 121.3 120 60.0
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.8e-22 112.1 366 45.1
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 3.3e-21 107.8 356 27.5
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 7.4e-21 106.7 88 61.4
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 6.9e-19 100.1 322 43.5
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 5.5e-16 90.5 143 44.1
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 7.1e-16 90.1 123 43.9
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 1.6e-12 79.0 161 36.0
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 1.1e-11 76.3 106 44.3
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 2.6e-10 71.6 114 41.2
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 7.6e-10 70.1 57 64.9
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 1.9e-08 65.5 325 45.2
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 5.5e-08 63.9 77 46.8
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 2.3e-06 58.5 71 47.9


User provided reference genes

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