Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3519 Fragaria x ananassa HOM05D007405 ORTHO05D009256 3.4e-132 476.5 674 100.0
FAN09G1987 Fragaria x ananassa HOM05D007405 ORTHO05D009256 5.0e-115 419.5 674 96.1
FAN05G4748 Fragaria x ananassa HOM05D007405 ORTHO05D009256 5.7e-111 406.0 655 87.6
FAN14G0904 Fragaria x ananassa HOM05D007405 ORTHO05D009256 1.3e-107 394.8 674 94.5
FAN14G4765 Fragaria x ananassa HOM05D007405 ORTHO05D009256 1.3e-107 394.8 674 94.5
FvH4_6g49520 Fragaria vesca HOM05D007405 ORTHO05D009256 1.3e-102 378.3 664 94.7
FAN02G3321 Fragaria x ananassa HOM05D007405 ORTHO05D009256 1.8e-96 357.8 188 100.0
RcHm_v2.0_Chr2g0169431 Rosa chinensis HOM05D007405 ORTHO05D009256 2.5e-74 284.3 683 83.6
Prupe.3G273600 Prunus persica HOM05D007405 ORTHO05D009256 2.1e-60 238.0 673 69.5
MD09G1044200 Malus domestica HOM05D007405 ORTHO05D009256 1.6e-57 228.4 671 82.9
Sopen02g032330 Solanum pennellii HOM05D007405 ORTHO05D009256 1.3e-54 218.8 559 80.7
Solyc02g087560.1 Solanum lycopersicum HOM05D007405 ORTHO05D009256 3.5e-52 210.7 548 81.4
Sabra17G0067600 Salix brachista HOM05D007405 ORTHO05D009256 7.8e-52 209.5 574 82.9
EL10Ac2g02615 Beta vulgaris HOM05D007405 ORTHO05D009256 1.3e-51 208.8 631 80.7
Migut.H00884 Erythranthe guttata HOM05D007405 ORTHO05D009256 1.3e-51 208.8 658 68.8
Oeu027767.1 Olea europaea HOM05D007405 ORTHO05D009256 1.5e-50 205.3 625 81.0
Potri.017G075700 Populus trichocarpa HOM05D007405 ORTHO05D009256 1.5e-50 205.3 574 83.1
Cfa007501 Carpinus fangiana HOM05D007405 ORTHO05D009256 5.6e-50 203.4 581 77.5
GSVIVG01032591001 Vitis vinifera HOM05D007405 ORTHO05D009256 5.6e-50 203.4 567 82.5
ClCG10G014780 Citrullus lanatus HOM05D007405 ORTHO05D009256 1.3e-49 202.2 677 76.2
CANSAT64G0564 Cannabis sativa HOM05D007405 ORTHO05D009256 1.4e-48 198.7 575 80.0
Haze_14594 Corylus avellana HOM05D007405 ORTHO05D009256 1.5e-47 195.3 578 78.0
Actinidia36037 Actinidia chinensis HOM05D007405 ORTHO05D009256 3.4e-47 194.1 670 72.2
Ah.10g031180 Amaranthus hybridus HOM05D007405 ORTHO05D009256 4.4e-47 193.7 619 75.0
CsaV3_3G041760 Cucumis sativus L. HOM05D007405 ORTHO05D009256 9.9e-47 192.6 536 80.4
Lsat_1_v5_gn_2_90480 Lactuca sativa HOM05D007405 ORTHO05D009256 1.3e-46 192.2 663 79.6
MSTRG.19401 Avicennia marina HOM05D007405 ORTHO05D009256 4.9e-46 190.3 661 76.2
CiPaw.04G020600 Carya illinoinensis HOM05D007405 ORTHO05D009256 4.9e-46 190.3 577 79.5
MELO3C009896.2 Cucumis melo HOM05D007405 ORTHO05D009256 8.4e-46 189.5 530 81.3
QL02p079911 Quercus lobata HOM05D007405 ORTHO05D009256 8.4e-46 189.5 558 81.0
CARHR262150 Cardamine hirsuta HOM05D007405 ORTHO05D009256 1.1e-45 189.1 569 82.4
AUR62018305 Chenopodium quinoa HOM05D007405 ORTHO05D009256 1.9e-45 188.3 528 85.6
AT5G39980 Arabidopsis thaliana HOM05D007405 ORTHO05D009256 3.2e-45 187.6 558 83.2
AL7G50110 Arabidopsis lyrata HOM05D007405 ORTHO05D009256 4.2e-45 187.2 564 82.3
Sp7g02090 Schrenkiella parvula HOM05D007405 ORTHO05D009256 5.4e-45 186.8 564 82.8
SGA_v2.0_scaffold115G32153 Striga asiatica HOM05D007405 ORTHO05D009256 5.4e-45 186.8 670 68.4
AUR62030576 Chenopodium quinoa HOM05D007405 ORTHO05D009256 7.1e-45 186.4 558 82.3
CAN.G206.101 Capsicum annuum HOM05D007405 ORTHO05D009256 3.5e-44 184.1 142 65.5
PGSC0003DMG400001306 Solanum tuberosum HOM05D007405 ORTHO05D009256 3.5e-44 184.1 576 84.4
CSS0008879 Camellia sinensis var. sinensis HOM05D007405 ORTHO05D009256 1.3e-43 182.2 558 79.7
Nitab4.5_0002265g0130 Nicotiana tabacum HOM05D007405 ORTHO05D009256 1.7e-43 181.8 149 61.7
CSS0011088 Camellia sinensis var. sinensis HOM05D007405 ORTHO05D009256 3.0e-43 181.0 479 87.3
HanXRQChr14g0449381 Helianthus annuus HOM05D007405 ORTHO05D009256 1.5e-42 178.7 139 60.4
VMungo1383G1541 Vigna mungo HOM05D007405 ORTHO05D009256 2.5e-42 177.9 509 82.1
Manes.17G025500 Manihot esculenta HOM05D007405 ORTHO05D009256 3.3e-42 177.6 189 54.5
Glyma.18G000700 Glycine max HOM05D007405 ORTHO05D009256 5.6e-42 176.8 516 80.4
TWI56G0828 Tripterygium wilfordii HOM05D007405 ORTHO05D009256 5.6e-42 176.8 181 57.5
Ciclev10011224m.g Citrus clementina HOM05D007405 ORTHO05D009256 7.3e-42 176.4 199 52.8
Sed0003758 Sechium edule HOM05D007405 ORTHO05D009256 1.3e-41 175.6 558 77.2
Cc07_g02870 Coffea canephora HOM05D007405 ORTHO05D009256 2.8e-41 174.5 481 86.3
Dinv33696 Davidia involucrata HOM05D007405 ORTHO05D009256 2.8e-41 174.5 564 66.7
Lj6g0001930 Lotus japonicus HOM05D007405 ORTHO05D009256 2.8e-41 174.5 141 63.8
Thhalv10028245m.g Eutrema salsugineum HOM05D007405 ORTHO05D009256 3.6e-41 174.1 194 53.6
Glyma.11G256300 Glycine max HOM05D007405 ORTHO05D009256 6.2e-41 173.3 514 81.7
THA.LOC104823926 Tarenaya hassleriana HOM05D007405 ORTHO05D009256 6.2e-41 173.3 674 78.3
Atru.chr8.2441 Acer truncatum HOM05D007405 ORTHO05D009256 1.1e-40 172.6 202 53.0
A07p20170 Brassica napus HOM05D007405 ORTHO05D009256 1.1e-40 172.6 185 55.7
BcaC08g44440 Brassica carinata HOM05D007405 ORTHO05D009256 3.1e-40 171.0 189 52.4
C06p18840 Brassica napus HOM05D007405 ORTHO05D009256 3.1e-40 171.0 189 52.4
BolC6t37089H Brassica oleracea HOM05D007405 ORTHO05D009256 3.1e-40 171.0 189 52.4
Carub.0007s3571 Capsella rubella HOM05D007405 ORTHO05D009256 4.0e-40 170.6 486 90.9
BraA07t29716Z Brassica rapa HOM05D007405 ORTHO05D009256 5.3e-40 170.2 185 55.1
Lalb_Chr23g0278451 Lupinus albus HOM05D007405 ORTHO05D009256 9.0e-40 169.5 173 52.6
DCAR_011169 Daucus carota HOM05D007405 ORTHO05D009256 1.2e-39 169.1 175 54.9
Lj7A402T45 Lonicera japonica HOM05D007405 ORTHO05D009256 1.5e-39 168.7 674 70.2
BcaB02g07958 Brassica carinata HOM05D007405 ORTHO05D009256 3.4e-39 167.5 190 51.1
Thecc.04G073000 Theobroma cacao HOM05D007405 ORTHO05D009256 3.4e-39 167.5 677 78.1
PGR031G2628 Punica granatum HOM05D007405 ORTHO05D009256 7.6e-39 166.4 113 71.7
Aa31LG9G1630 Aethionema arabicum HOM05D000330 ORTHO05D009256 9.9e-39 166.0 568 80.5
Duzib147G0736 Durio zibethinus HOM05D007405 ORTHO05D009256 4.9e-38 163.7 191 50.3
Sc11g0006880 Simmondsia chinensis HOM05D007405 ORTHO05D009256 6.4e-38 163.3 561 79.1
Gohir.D07G222200 Gossypium hirsutum HOM05D007405 ORTHO05D009256 5.4e-37 160.2 186 52.2
Gorai.001G256500 Gossypium raimondii HOM05D007405 ORTHO05D009256 5.4e-37 160.2 186 52.2
Gohir.A07G215301 Gossypium hirsutum HOM05D007405 ORTHO05D009256 7.1e-37 159.8 192 49.5
TAR039G0001 Trochodendron aralioides HOM05D002295 ORTHO05D002789 1.2e-36 159.1 556 81.5
MBI08_g09795_MAGBIO Magnolia biondii HOM05D007405 ORTHO05D009256 1.6e-36 158.7 180 77.8
Cpa.g.sc14.54 Carica papaya HOM05D007405 ORTHO05D009256 2.3e-35 154.8 99 75.8
TPR.G22753 Trifolium pratense HOM05D007405 ORTHO05D009256 3.3e-34 151.0 114 63.2
Psat5g105040 Pisum sativum HOM05D007405 ORTHO05D009256 4.3e-34 150.6 195 48.2
COL.COLO4_25223 Corchorus olitorius HOM05D000330 ORTHO05D000209 5.6e-34 150.2 104 67.3
PSO832G3067 Papaver somniferum HOM05D007405 ORTHO05D009256 5.6e-34 150.2 488 88.1
Medtr3g083680 Medicago truncatula HOM05D007405 ORTHO05D009256 1.3e-33 149.1 106 64.2
Nn1g09226 Nelumbo nucifera HOM05D007405 ORTHO05D009256 4.8e-33 147.1 143 54.5
CDE06G2170 Ceratophyllum demersum HOM05D007405 ORTHO05D009256 1.1e-32 146.0 177 65.0
Ca_16386_v3 Cicer arietinum L. HOM05D007405 ORTHO05D009256 3.1e-32 144.4 196 50.0
Ca_29700_v3 Cicer arietinum L. HOM05D007405 ORTHO05D009256 3.1e-32 144.4 196 50.0
PSO591G0419 Papaver somniferum HOM05D007405 ORTHO05D009256 4.0e-32 144.1 488 87.7
Rhsim10G0030900 Rhododendron simsii HOM05D007405 ORTHO05D009256 1.5e-31 142.1 95 70.5
Phvul.001G268500 Phaseolus vulgaris HOM05D007405 ORTHO05D009256 6.0e-28 130.2 72 83.3
Peaxi162Scf00129g00512 Petunia axillaris HOM05D007405 ORTHO05D009256 8.7e-27 126.3 72 81.9
ATR1127G129 Amborella trichopoda HOM05D007405 ORTHO05D009256 2.8e-25 121.3 176 42.6
Nitab4.5_0000564g0400 Nicotiana tabacum HOM05D007405 ORTHO05D009256 6.2e-25 120.2 66 84.8
SEGI_22031 Sequoiadendron giganteum HOM05D007405 ORTHO05D009256 1.8e-24 118.6 176 38.1
HPP92_019727 Vanilla planifolia HOM05D007405 ORTHO05D009256 2.9e-22 111.3 180 33.3
AagrBONN_evm.TU.Sc2ySwM_117.2241 Anthoceros agrestis HOM05D007405 ORTHO05D009256 4.3e-18 97.4 101 44.6
Pp3c3_5760 Physcomitrium patens HOM05D007405 ORTHO05D009256 7.4e-18 96.7 102 41.2
Pp3c3_5764 Physcomitrium patens HOM05D007405 ORTHO05D009256 7.4e-18 96.7 102 41.2
Zm00001eb148940 Zea mays HOM05D007405 ORTHO05D009256 1.6e-17 95.5 176 47.7
Os01g0833000 Oryza sativa ssp. japonica HOM05D007405 ORTHO05D009256 2.2e-17 95.1 179 49.2
Eucgr.J02141 Eucalyptus grandis HOM05D007405 ORTHO05D009256 6.3e-17 93.6 53 83.0
Mapoly0061s0076 Marchantia polymorpha HOM05D007405 ORTHO05D009256 4.1e-16 90.9 95 44.2
Actinidia06059 Actinidia chinensis HOM05D007405 ORTHO05D009256 2.9e-14 84.7 181 36.5
FAN02G2814 Fragaria x ananassa HOM05D007405 ORTHO05D009256 5.0e-14 84.0 40 100.0
FAN02G2590 Fragaria x ananassa HOM05D007405 ORTHO05D009256 3.2e-13 81.3 104 88.5
SMO367G0452 Selaginella moellendorffii HOM05D007405 ORTHO05D009256 1.8e-11 75.5 59 57.6
Actinidia06062 Actinidia chinensis HOM05D007405 ORTHO05D009256 2.8e-09 68.2 74 55.4
Actinidia06778 Actinidia chinensis HOM05D002479 ORTHO05D002675 7.7e-07 60.1 94 31.9
Actinidia07832 Actinidia chinensis HOM05D002479 ORTHO05D002675 7.7e-07 60.1 94 31.9
PGR004G1668 Punica granatum HOM05D002479 ORTHO05D002675 7.7e-07 60.1 94 33.0
DCAR_005281 Daucus carota HOM05D002479 ORTHO05D002675 1.0e-06 59.7 90 33.3
Sc19g0003840 Simmondsia chinensis HOM05D002479 ORTHO05D002675 3.8e-06 57.8 94 33.0


User provided reference genes

Program Settings