Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 5.9e-164 581.3 405 100.0
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 3.0e-139 499.2 405 89.9
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 1.9e-138 496.5 406 90.4
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 4.7e-137 491.9 405 88.9
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 7.1e-133 478.0 435 77.9
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 3.3e-114 416.0 407 76.7
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 4.3e-114 415.6 411 78.6
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 1.2e-111 407.5 415 76.4
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 4.9e-110 402.1 406 78.8
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 6.5e-110 401.7 408 78.2
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 3.2e-109 399.4 410 76.3
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 1.6e-108 397.1 405 76.5
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 7.9e-108 394.8 403 75.2
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 1.8e-107 393.7 410 74.6
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 3.0e-107 392.9 411 78.1
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 8.7e-107 391.3 406 76.4
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 8.7e-107 391.3 406 76.1
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 1.1e-106 391.0 411 74.5
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 1.5e-106 390.6 406 76.8
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 3.3e-106 389.4 409 75.3
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 4.3e-106 389.0 403 77.2
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 7.4e-106 388.3 409 77.8
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 7.4e-106 388.3 409 77.8
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 2.8e-105 386.3 403 74.2
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 8.2e-105 384.8 406 77.3
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 4.5e-103 379.0 400 71.2
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 8.5e-102 374.8 403 74.2
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 1.4e-101 374.0 232 78.4
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 2.5e-101 373.2 235 80.0
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 3.2e-101 372.9 407 74.9
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 3.2e-101 372.9 403 68.0
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 2.7e-100 369.8 412 73.5
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 2.7e-100 369.8 406 73.6
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 6.1e-100 368.6 408 70.6
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 6.1e-100 368.6 408 70.6
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 1.4e-99 367.5 414 70.8
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 1.8e-99 367.1 235 78.3
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 3.0e-99 366.3 422 71.8
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 3.9e-99 365.9 235 77.9
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 5.1e-99 365.5 509 47.9
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 1.9e-98 363.6 408 74.3
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 2.5e-98 363.2 234 75.6
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 2.5e-98 363.2 420 70.5
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 3.3e-98 362.8 408 74.3
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 3.3e-98 362.8 418 75.6
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 4.3e-98 362.5 410 73.2
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 7.4e-98 361.7 234 73.9
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 1.3e-97 360.9 412 66.5
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 6.3e-97 358.6 424 72.9
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 8.2e-97 358.2 408 72.5
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 8.2e-97 358.2 408 72.8
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 1.4e-96 357.5 235 77.9
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 1.4e-96 357.5 235 77.9
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 1.4e-96 357.5 235 77.9
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 1.4e-96 357.5 402 72.4
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 1.8e-96 357.1 418 72.5
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 1.8e-96 357.1 412 74.0
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 1.8e-96 357.1 414 70.5
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 3.1e-96 356.3 408 72.1
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 4.1e-96 355.9 234 76.1
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 9.1e-96 354.8 411 73.0
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 9.1e-96 354.8 235 76.6
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 9.1e-96 354.8 234 75.2
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 1.5e-95 354.0 413 72.2
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 2.0e-95 353.6 234 76.1
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 3.4e-95 352.8 235 75.7
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 4.5e-95 352.4 204 81.9
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 1.0e-94 351.3 234 77.4
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 1.0e-94 351.3 233 75.1
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 1.0e-94 351.3 406 73.6
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 1.0e-94 351.3 407 73.2
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 1.3e-94 350.9 237 75.5
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 1.7e-94 350.5 235 74.0
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 6.5e-94 348.6 204 80.9
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 6.5e-94 348.6 411 67.6
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 6.5e-94 348.6 229 77.3
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 6.5e-94 348.6 229 77.3
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 1.1e-93 347.8 204 80.9
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 1.1e-93 347.8 442 68.8
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 1.4e-93 347.4 452 68.4
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 1.4e-93 347.4 204 80.9
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.4e-93 347.4 253 69.6
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 2.5e-93 346.7 204 80.4
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 4.2e-93 345.9 204 80.4
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 7.2e-93 345.1 204 81.9
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 7.2e-93 345.1 432 57.6
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 1.2e-92 344.4 407 70.8
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 1.6e-92 344.0 402 75.4
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 2.1e-92 343.6 234 74.4
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 2.7e-92 343.2 204 80.9
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 3.6e-92 342.8 418 51.9
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 4.7e-92 342.4 204 79.9
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 7.9e-92 341.7 410 73.4
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 3.0e-91 339.7 204 80.4
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 3.9e-91 339.3 227 73.6
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 8.8e-91 338.2 211 79.1
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 3.3e-90 336.3 405 72.8
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 4.4e-90 335.9 406 71.4
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 5.7e-90 335.5 406 70.9
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 1.8e-88 330.5 204 77.0
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 5.3e-88 328.9 495 58.6
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 7.0e-88 328.6 204 75.5
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 1.2e-87 327.8 204 74.5
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 1.5e-87 327.4 232 71.6
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 1.5e-87 327.4 225 72.9
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 4.5e-87 325.9 204 75.5
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 2.2e-86 323.6 204 77.5
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 1.9e-85 320.5 233 69.1
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 9.4e-85 318.2 227 68.7
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 8.0e-84 315.1 204 73.5
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 6.7e-83 312.0 537 53.8
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.5e-82 310.8 410 47.8
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.4e-80 304.3 181 80.1
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 4.1e-80 302.8 406 47.8
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 4.1e-80 302.8 204 70.6
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 4.0e-75 286.2 410 66.3
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 5.5e-69 265.8 204 59.3
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 5.4e-64 249.2 236 59.7
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 2.5e-53 213.8 227 48.0
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 3.4e-50 203.4 198 50.5
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 9.8e-50 201.8 312 63.1
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 1.3e-49 201.4 351 63.5
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 5.4e-48 196.1 206 49.5
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 9.5e-45 185.3 97 84.5
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 1.9e-40 171.0 94 80.9
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 1.3e-38 164.9 139 64.0
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 2.2e-25 120.9 83 80.7
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 2.9e-25 120.6 102 59.8
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 4.3e-21 106.7 84 63.1
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 4.3e-21 106.7 84 63.1
Lj3g0025046 Lotus japonicus HOM05D005421 ORTHO05D026565 1.9e-16 91.3 50 86.0
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 2.3e-14 84.3 53 67.9
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 1.9e-13 81.3 73 60.3
Oeu029357.1 Olea europaea HOM05D005421 ORTHO05D026565 3.2e-08 63.9 52 67.3
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 9.3e-08 62.4 56 58.9


User provided reference genes

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