Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.9e-209 732.3 361 100.0
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 1.2e-184 649.8 360 90.6
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 7.1e-177 624.0 335 92.5
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.8e-112 409.5 285 76.1
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 9.0e-79 298.1 360 50.3
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 1.6e-64 250.8 347 47.6
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 3.4e-54 216.5 312 45.8
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 1.1e-44 184.9 389 37.0
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 2.5e-36 157.1 428 31.1
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 2.1e-35 154.1 321 36.1
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 2.7e-35 153.7 329 33.1
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 4.7e-35 152.9 456 28.9
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 1.0e-34 151.8 329 32.2
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 6.7e-34 149.1 319 33.9
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 1.1e-33 148.3 324 34.0
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.1e-33 148.3 321 34.0
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 1.5e-33 147.9 320 35.3
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.5e-33 147.9 318 33.0
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 2.0e-33 147.5 329 32.2
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 3.3e-33 146.7 329 32.2
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 4.4e-33 146.4 280 35.0
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 1.7e-32 144.4 278 34.5
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.2e-32 144.1 323 34.4
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 2.8e-32 143.7 320 32.8
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 2.8e-32 143.7 279 34.4
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.7e-32 143.3 324 33.3
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 6.3e-32 142.5 266 38.3
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 6.3e-32 142.5 329 30.7
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 8.2e-32 142.1 301 33.6
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 1.1e-31 141.7 134 51.5
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.1e-31 140.2 324 33.3
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 5.3e-31 139.4 320 32.5
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 7.0e-31 139.0 320 31.2
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 7.0e-31 139.0 320 30.9
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 1.2e-30 138.3 329 32.5
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.6e-30 137.9 281 33.5
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 2.0e-30 137.5 278 32.4
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 2.0e-30 137.5 140 51.4
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.0e-30 137.5 322 32.3
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.5e-30 136.7 320 30.3
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 3.5e-30 136.7 272 33.1
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 3.5e-30 136.7 320 32.2
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.5e-30 136.3 142 50.0
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 7.7e-30 135.6 320 30.6
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 7.7e-30 135.6 134 52.2
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.0e-29 135.2 324 30.6
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 1.0e-29 135.2 280 32.1
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 1.0e-29 135.2 169 45.0
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 1.7e-29 134.4 320 31.2
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 1.7e-29 134.4 132 53.0
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 2.2e-29 134.0 155 48.4
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 2.2e-29 134.0 320 32.2
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.2e-29 134.0 283 32.9
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 2.2e-29 134.0 321 31.8
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.9e-29 133.7 271 31.7
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 2.9e-29 133.7 132 53.8
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 3.8e-29 133.3 320 30.6
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 3.8e-29 133.3 327 30.9
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 5.0e-29 132.9 320 30.0
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 5.0e-29 132.9 278 31.3
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 6.5e-29 132.5 320 30.3
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 6.5e-29 132.5 278 34.5
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 6.5e-29 132.5 271 31.4
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 6.5e-29 132.5 271 31.4
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 6.5e-29 132.5 134 50.0
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 6.5e-29 132.5 320 31.6
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 6.5e-29 132.5 318 31.4
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 6.5e-29 132.5 134 50.7
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 6.5e-29 132.5 150 47.3
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 8.5e-29 132.1 329 28.9
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 8.5e-29 132.1 134 51.5
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 8.5e-29 132.1 320 30.9
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 8.5e-29 132.1 134 50.7
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 1.1e-28 131.7 164 45.1
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 1.1e-28 131.7 320 31.9
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 1.1e-28 131.7 320 29.7
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 1.5e-28 131.3 320 32.2
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 1.5e-28 131.3 135 50.4
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 1.9e-28 131.0 320 31.6
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.9e-28 131.0 320 33.1
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 2.5e-28 130.6 166 44.6
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 2.5e-28 130.6 320 30.6
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 2.5e-28 130.6 169 44.4
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 4.2e-28 129.8 132 50.8
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 4.2e-28 129.8 320 32.8
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 4.2e-28 129.8 320 32.8
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 5.5e-28 129.4 326 31.6
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 5.5e-28 129.4 132 49.2
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 7.2e-28 129.0 316 31.6
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 9.4e-28 128.6 271 31.4
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 9.4e-28 128.6 314 32.5
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 9.4e-28 128.6 167 43.1
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 9.4e-28 128.6 271 31.0
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 9.4e-28 128.6 168 44.6
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 9.4e-28 128.6 132 51.5
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 1.2e-27 128.3 132 50.8
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 1.6e-27 127.9 321 32.1
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.1e-27 127.5 271 31.0
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 4.7e-27 126.3 272 32.4
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 8.0e-27 125.6 134 48.5
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.4e-26 124.8 134 48.5
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 1.4e-26 124.8 327 28.4
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 1.8e-26 124.4 314 31.2
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 2.3e-26 124.0 270 31.5
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 2.3e-26 124.0 329 30.1
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 4.0e-26 123.2 143 45.5
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 5.2e-26 122.9 273 31.9
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 8.8e-26 122.1 132 49.2
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 1.5e-25 121.3 135 48.1
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 1.5e-25 121.3 274 29.9
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 5.7e-25 119.4 322 28.6
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 7.5e-25 119.0 284 31.0
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 9.7e-25 118.6 278 28.8
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 9.7e-25 118.6 139 45.3
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 9.7e-25 118.6 140 45.0
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 9.7e-25 118.6 321 31.2
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 1.7e-24 117.9 271 29.9
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 1.7e-24 117.9 317 27.8
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 2.2e-24 117.5 271 29.2
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 2.2e-24 117.5 139 45.3
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 2.8e-24 117.1 271 29.2
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.8e-24 117.1 161 42.9
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 3.7e-24 116.7 271 29.5
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 3.7e-24 116.7 322 28.6
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.4e-23 114.8 271 29.2
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 1.4e-23 114.8 271 30.3
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 1.8e-23 114.4 154 40.9
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 3.1e-23 113.6 162 42.6
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 5.3e-23 112.8 271 31.7
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 5.3e-23 112.8 135 45.9
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 5.3e-23 112.8 131 47.3
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 1.2e-22 111.7 271 28.8
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 1.6e-22 111.3 155 40.0
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 2.0e-22 110.9 153 42.5
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 1.7e-21 107.8 146 42.5
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 2.2e-21 107.5 146 42.5
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 3.8e-21 106.7 303 28.7
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 9.4e-20 102.1 166 39.2
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 3.6e-19 100.1 174 37.9
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.3e-18 97.4 117 47.0
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 1.5e-17 94.7 161 38.5
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 4.4e-17 93.2 165 35.2
FAN09G2086 Fragaria x ananassa HOM05D004427 ORTHO05D005381 8.3e-16 89.0 49 89.8
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 1.1e-15 88.6 174 35.1
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 3.1e-15 87.0 131 42.0
FvH4_4g01090 Fragaria vesca HOM05D028185 ORTHO05D025555 9.1e-15 85.5 86 52.3
FAN17G0076 Fragaria x ananassa HOM05D028185 ORTHO05D025555 3.5e-14 83.6 86 51.2
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.9e-14 82.8 126 38.1
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 7.7e-14 82.4 170 35.3
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 1.3e-13 81.6 176 34.7
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.9e-13 80.5 83 54.2
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.9e-12 77.8 83 54.2
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.9e-12 77.8 95 43.2
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 1.2e-11 75.1 83 43.4
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 1.6e-11 74.7 139 33.1
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 1.6e-11 74.7 207 24.6
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 8.8e-10 68.9 196 24.5
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.9e-08 63.2 76 40.8
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.3e-08 62.8 66 45.5
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 1.4e-07 61.6 102 33.3
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 1.4e-07 61.6 102 33.3


User provided reference genes

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