Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 5.1e-298 1026.9 499 100.0
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 2.9e-237 825.1 499 84.0
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 4.2e-236 821.2 499 83.8
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 9.4e-236 820.1 499 83.6
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 1.7e-221 772.7 495 78.8
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 3.7e-192 675.2 495 70.1
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 1.5e-188 663.3 504 68.3
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 1.2e-179 633.6 495 65.1
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 3.6e-179 632.1 495 63.4
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 1.8e-178 629.8 495 64.8
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 3.1e-178 629.0 495 63.6
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 4.0e-178 628.6 495 64.6
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 8.9e-178 627.5 495 63.0
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 7.6e-177 624.4 504 65.5
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 1.4e-175 620.2 495 63.0
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 1.9e-175 619.8 493 64.1
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 5.4e-175 618.2 497 62.6
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 2.7e-174 615.9 497 63.4
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 3.5e-174 615.5 495 63.2
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.7e-173 613.2 497 63.0
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 1.7e-173 613.2 489 63.4
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 5.1e-173 611.7 494 62.8
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 8.6e-173 610.9 489 63.6
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 1.1e-172 610.5 495 61.6
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 4.3e-172 608.6 489 63.6
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 4.3e-172 608.6 499 62.1
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 7.3e-172 607.8 500 62.2
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 2.8e-171 605.9 496 62.7
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 8.1e-171 604.4 488 62.7
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 1.1e-170 604.0 499 62.7
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 1.4e-170 603.6 488 61.9
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 1.8e-170 603.2 495 61.4
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 2.4e-170 602.8 482 63.9
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 2.4e-170 602.8 495 61.2
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 4.0e-170 602.1 488 62.9
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 5.2e-170 601.7 488 62.5
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 5.2e-170 601.7 488 62.5
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 8.9e-170 600.9 495 60.2
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 2.6e-169 599.4 488 62.7
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 1.9e-167 593.2 498 61.2
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 7.1e-167 591.3 495 60.2
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 2.7e-166 589.3 495 60.0
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 2.5e-164 582.8 495 61.0
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 3.3e-164 582.4 487 60.0
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 7.3e-164 581.3 519 58.6
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 1.2e-161 573.9 500 60.0
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 7.6e-161 571.2 547 55.6
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 7.6e-161 571.2 499 59.5
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 1.3e-160 570.5 499 58.9
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 3.2e-159 565.8 497 57.1
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 7.1e-159 564.7 500 60.0
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 7.1e-159 564.7 497 59.4
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 9.3e-159 564.3 494 56.9
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 9.3e-159 564.3 497 59.0
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 1.2e-158 563.9 488 58.6
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 1.6e-158 563.5 489 59.5
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 2.7e-158 562.8 459 63.4
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 6.0e-158 561.6 496 57.7
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 3.9e-157 558.9 488 59.2
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 3.9e-157 558.9 463 60.9
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 2.1e-155 553.1 483 57.1
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 2.8e-155 552.7 495 57.4
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 1.8e-154 550.1 495 57.4
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 6.9e-154 548.1 496 57.9
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 5.8e-153 545.0 488 57.6
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 7.6e-153 544.7 496 57.5
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 7.6e-153 544.7 496 57.5
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 1.3e-152 543.9 494 57.1
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 2.2e-152 543.1 497 57.5
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 1.4e-151 540.4 488 56.6
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 1.9e-151 540.0 465 59.4
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 3.5e-150 535.8 495 56.6
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 1.8e-149 533.5 495 56.8
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 8.7e-149 531.2 500 56.6
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 2.5e-148 529.6 465 58.5
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 4.3e-148 528.9 484 56.6
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 2.8e-147 526.2 499 55.1
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 6.2e-147 525.0 499 55.7
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 9.0e-146 521.2 466 57.9
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 2.0e-145 520.0 499 54.7
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 4.5e-145 518.8 499 54.5
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 1.1e-143 514.2 487 56.1
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 3.2e-143 512.7 465 57.4
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 9.3e-143 511.1 496 55.0
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 6.7e-141 505.0 544 51.7
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 6.7e-141 505.0 499 52.5
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 2.1e-139 500.0 495 53.5
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 1.1e-138 497.7 441 59.6
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 1.9e-135 486.9 496 51.6
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 2.1e-134 483.4 332 71.4
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 2.5e-132 476.5 441 57.1
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 5.9e-129 465.3 518 51.5
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 2.9e-128 463.0 495 50.9
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 2.7e-126 456.4 495 48.7
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 3.7e-123 446.0 456 52.9
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 2.1e-118 430.3 289 70.9
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 2.1e-118 430.3 427 52.7
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 2.7e-118 429.9 488 48.6
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 7.9e-118 428.3 288 71.2
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 1.8e-117 427.2 288 70.8
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 3.9e-117 426.0 496 49.0
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.3e-115 421.0 511 48.9
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 2.0e-113 413.7 482 50.0
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 3.2e-103 379.8 472 46.2
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 2.3e-101 373.6 490 42.2
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 8.3e-99 365.2 372 53.0
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 9.4e-95 351.7 491 42.0
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 2.2e-91 340.5 507 42.2
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 5.4e-90 335.9 500 42.4
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 1.9e-87 327.4 496 38.7
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 1.6e-86 324.3 494 41.3
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 3.6e-86 323.2 495 38.8
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 2.6e-84 317.0 193 75.1
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 1.8e-82 310.8 502 39.0
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 3.2e-74 283.5 709 32.0
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 5.4e-74 282.7 339 46.6
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 4.6e-73 279.6 275 52.7
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 5.6e-63 246.1 327 45.9
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 5.6e-63 246.1 545 33.6
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 4.9e-59 233.0 763 28.0
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 1.1e-58 231.9 335 42.4
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 1.6e-49 201.4 162 62.3
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 3.4e-36 157.1 148 49.3
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 1.2e-28 132.1 302 32.8
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 1.2e-28 132.1 215 40.5
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 3.4e-28 130.6 302 32.8
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 4.9e-27 126.7 79 74.7
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 2.3e-24 117.9 82 63.4
Thecc.04G111800 Theobroma cacao HOM05D001104 ORTHO05D006624 2.5e-23 114.4 82 63.4
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 1.7e-19 101.7 67 64.2
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 1.4e-18 98.6 58 77.6
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 6.7e-16 89.7 71 67.6
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 8.7e-16 89.4 100 53.0
HanXRQChr16g0517041 Helianthus annuus HOM05D001104 ORTHO05D006624 1.1e-15 89.0 67 59.7
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 4.5e-12 77.0 480 22.7
SEGI_37884 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 4.5e-12 77.0 56 55.4
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 5.5e-10 70.1 98 45.9
Sopen07g006450 Solanum pennellii HOM05D001104 ORTHO05D006624 2.1e-09 68.2 60 50.0
SEGI_12261 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 1.3e-06 58.9 96 38.5


User provided reference genes

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