Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3171 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1603.6 828 100.0
FvH4_6g25220 Fragaria vesca HOM05D004602 ORTHO05D005906 0.0e+00 1569.3 827 97.9
FAN14G4483 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1565.4 827 97.7
FAN09G3373 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1550.8 827 97.6
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1514.2 827 94.2
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 0.0e+00 1357.0 827 84.9
MD14G1099800 Malus domestica HOM05D004602 ORTHO05D005906 0.0e+00 1350.5 827 85.0
Haze_19715 Corylus avellana HOM05D004602 ORTHO05D005906 0.0e+00 1293.9 831 80.0
Dinv08512 Davidia involucrata HOM05D004602 ORTHO05D005906 0.0e+00 1287.3 829 79.9
QL07p008767 Quercus lobata HOM05D004602 ORTHO05D005906 0.0e+00 1285.8 831 79.3
CSS0046388 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1282.3 831 78.7
CSS0013313 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1279.6 831 78.6
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1258.4 831 78.0
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 0.0e+00 1253.8 831 76.9
Potri.006G041500 Populus trichocarpa HOM05D004602 ORTHO05D005906 0.0e+00 1248.8 828 77.8
Ciclev10018515m.g Citrus clementina HOM05D004602 ORTHO05D005906 0.0e+00 1244.2 829 77.2
Lj1A1104G73 Lonicera japonica HOM05D004602 ORTHO05D005906 0.0e+00 1243.8 837 76.7
Sabra06G0028200 Salix brachista HOM05D004602 ORTHO05D005906 0.0e+00 1239.9 827 78.0
Thecc.05G139800 Theobroma cacao HOM05D004602 ORTHO05D005906 0.0e+00 1238.8 827 78.1
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 0.0e+00 1238.4 827 78.1
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 0.0e+00 1238.4 827 77.9
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1234.6 828 76.4
vmacro09030 Vaccinium macrocarpon HOM05D004602 ORTHO05D005906 0.0e+00 1231.5 840 75.8
Sopen10g030360 Solanum pennellii HOM05D004602 ORTHO05D005906 0.0e+00 1227.2 827 76.4
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 0.0e+00 1221.1 827 76.1
Gohir.A11G308300 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1219.5 827 76.4
Gohir.D11G323700 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1218.4 827 76.4
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 0.0e+00 1216.8 829 75.2
Gorai.007G353800 Gossypium raimondii HOM05D004602 ORTHO05D005906 0.0e+00 1216.8 827 76.2
CAN.G641.74 Capsicum annuum HOM05D004602 ORTHO05D005906 0.0e+00 1216.1 827 75.6
TWI53G0771 Tripterygium wilfordii HOM05D004602 ORTHO05D005906 0.0e+00 1214.5 829 75.8
Migut.J01674 Erythranthe guttata HOM05D004602 ORTHO05D005906 0.0e+00 1214.1 828 75.2
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 0.0e+00 1213.7 827 75.7
Eucgr.A02262 Eucalyptus grandis HOM05D004602 ORTHO05D005906 0.0e+00 1213.4 828 74.9
SGA_v2.0_scaffold105G30304 Striga asiatica HOM05D004602 ORTHO05D005906 0.0e+00 1212.6 828 74.6
PGR031G1006 Punica granatum HOM05D004602 ORTHO05D005906 0.0e+00 1208.4 826 74.8
Nn2g14888 Nelumbo nucifera HOM05D004602 ORTHO05D005906 0.0e+00 1208.0 831 75.0
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 0.0e+00 1207.2 832 75.6
CiPaw.09G045900 Carya illinoinensis HOM05D004602 ORTHO05D005906 0.0e+00 1201.8 830 76.1
MSTRG.19816 Avicennia marina HOM05D004602 ORTHO05D005906 0.0e+00 1198.7 828 74.5
ECA236G3238 Erigeron canadensis HOM05D004602 ORTHO05D005906 0.0e+00 1191.0 830 75.1
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 0.0e+00 1190.3 830 74.7
Cpa.g.sc5.207 Carica papaya HOM05D004602 ORTHO05D005906 0.0e+00 1189.5 827 74.4
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1189.1 830 74.1
CARHR167250 Cardamine hirsuta HOM05D004602 ORTHO05D005906 0.0e+00 1186.8 832 72.1
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 0.0e+00 1186.4 832 74.3
THA.LOC104824412 Tarenaya hassleriana HOM05D004602 ORTHO05D005906 0.0e+00 1185.6 828 73.3
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 0.0e+00 1184.1 830 74.6
Lsat_1_v5_gn_8_82681 Lactuca sativa HOM05D004602 ORTHO05D005906 0.0e+00 1178.3 827 73.6
BraA04t16055Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 1177.9 830 72.3
MELO3C009773.2 Cucumis melo HOM05D004602 ORTHO05D005906 0.0e+00 1177.9 831 74.2
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 0.0e+00 1177.2 830 74.0
BolC4t25093H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 1176.8 830 72.3
TPR.G19659 Trifolium pratense HOM05D004602 ORTHO05D005906 0.0e+00 1176.8 832 73.6
BcaC02g09900 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1175.2 830 72.2
C04p35390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1175.2 830 72.2
A09p49980 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1174.5 830 71.8
BraA09t40448Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 1174.5 830 71.8
DCAR_016876 Daucus carota HOM05D004602 ORTHO05D005906 0.0e+00 1174.1 830 73.0
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1174.1 831 73.5
Sp5g05520 Schrenkiella parvula HOM05D004602 ORTHO05D005906 0.0e+00 1173.3 830 72.2
Thhalv10005748m.g Eutrema salsugineum HOM05D004602 ORTHO05D005906 0.0e+00 1169.8 830 72.3
Nitab4.5_0001364g0050 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1169.5 829 74.3
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 0.0e+00 1169.1 828 72.0
C08p32390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1168.7 830 71.6
HanXRQChr06g0176911 Helianthus annuus HOM05D004602 ORTHO05D005906 0.0e+00 1168.3 829 73.0
A04p03790 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1167.9 830 71.6
Carub.0005s2386 Capsella rubella HOM05D004602 ORTHO05D005906 0.0e+00 1166.4 829 71.2
AL5G38540 Arabidopsis lyrata HOM05D004602 ORTHO05D005906 0.0e+00 1163.7 829 71.7
Nitab4.5_0000571g0090 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1161.0 829 73.6
BolC8t50853H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 1155.6 830 70.8
Sed0020412 Sechium edule HOM05D004602 ORTHO05D005906 0.0e+00 1154.8 826 73.1
arahy.Tifrunner.gnm1.ann1.F5KNV4 Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1147.5 829 72.6
arahy.Tifrunner.gnm1.ann1.0AC10P Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1145.6 828 72.3
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 0.0e+00 1145.6 832 72.5
Medtr1g051230 Medicago truncatula HOM05D004602 ORTHO05D005906 0.0e+00 1145.2 831 71.4
AUR62030338 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1142.9 846 71.0
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1142.1 857 69.5
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 0.0e+00 1141.3 831 71.7
Hund24628 Selenicereus undatus HOM05D004602 ORTHO05D005906 0.0e+00 1140.9 830 72.7
COL.COLO4_37951 Corchorus olitorius HOM05D004602 ORTHO05D005906 0.0e+00 1140.2 827 73.0
PSO384G2446 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1139.8 828 71.3
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 0.0e+00 1137.5 827 70.6
Aa31LG10G11980 Aethionema arabicum HOM05D004602 ORTHO05D005906 0.0e+00 1136.7 827 70.5
Atru.chr1.1489 Acer truncatum HOM05D004602 ORTHO05D005906 0.0e+00 1135.6 778 76.1
AUR62040826 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1133.2 846 70.6
PSO339G0660 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1132.5 828 70.8
BcaC07g40050 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1122.1 830 69.6
CsaV3_3G040360 Cucumis sativus L. HOM05D004602 ORTHO05D005906 0.0e+00 1109.7 829 70.8
Rhsim04G0110600 Rhododendron simsii HOM05D004602 ORTHO05D005906 0.0e+00 1103.6 903 66.7
Ah.04g151080 Amaranthus hybridus HOM05D004602 ORTHO05D005906 0.0e+00 1099.7 840 68.7
unitig_21.g20921 Utricularia gibba HOM05D004602 ORTHO05D005906 0.0e+00 1099.0 832 70.1
BcaC07g40081 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1098.2 805 70.4
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 0.0e+00 1096.6 832 70.0
Peaxi162Scf00970g00168 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1094.3 856 67.1
GSVIVG01033598001 Vitis vinifera HOM05D004602 ORTHO05D005906 1.1e-308 1063.1 847 68.4
SHI28280 Sapria himalayana HOM05D004602 ORTHO05D005906 7.6e-307 1057.0 829 67.2
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 7.3e-302 1040.4 841 64.4
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 6.9e-300 1033.9 830 64.5
Zm00001eb329790 Zea mays HOM05D004602 ORTHO05D005906 1.5e-299 1032.7 830 64.8
BcaNung07305 Brassica carinata HOM05D004602 ORTHO05D005906 3.4e-299 1031.6 779 69.2
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 3.6e-293 1011.5 830 63.0
SEGI_37933 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 1.0e-279 966.8 850 60.1
CiPaw.16G087800 Carya illinoinensis HOM05D004602 ORTHO05D005906 1.9e-257 892.9 800 62.9
CANSAT56G2079 Cannabis sativa HOM05D004602 ORTHO05D005906 7.2e-225 784.6 511 78.1
Pp3c3_32300 Physcomitrium patens HOM05D004602 ORTHO05D005906 3.0e-223 779.2 848 51.7
AagrBONN_evm.TU.Sc2ySwM_362.2771 Anthoceros agrestis HOM05D004602 ORTHO05D005906 9.2e-220 767.7 860 49.0
Mapoly0022s0167 Marchantia polymorpha HOM05D004602 ORTHO05D005906 6.0e-211 738.4 849 47.3
Pp3c12_12160 Physcomitrium patens HOM05D004602 ORTHO05D005906 5.1e-202 708.8 847 47.0
SMO351G0392 Selaginella moellendorffii HOM05D004602 ORTHO05D005906 8.1e-200 701.4 835 46.0
CBR_g63081 Chara braunii HOM05D004602 ORTHO05D005906 1.3e-173 614.4 883 41.7
FvH4_6g26040 Fragaria vesca HOM05D004602 ORTHO05D005906 4.6e-147 526.2 346 82.9
MBI13_g01621_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.9e-138 496.5 345 71.9
CDE04G1839 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 2.0e-121 441.0 366 63.9
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 1.8e-119 434.5 833 31.9
MCO05G584 Micromonas commoda HOM05D004602 ORTHO05D005906 2.4e-111 407.5 869 32.8
COL.COLO4_37953 Corchorus olitorius HOM05D004602 ORTHO05D005906 3.4e-89 334.0 349 56.2
Cfa024947 Carpinus fangiana HOM05D004602 ORTHO05D005906 1.5e-65 255.4 870 25.4
Haze_26650 Corylus avellana HOM05D004602 ORTHO05D005906 1.6e-62 245.4 878 23.9
Lalb_Chr06g0173621 Lupinus albus HOM05D004602 ORTHO05D005906 3.2e-47 194.5 189 54.5
MBI08_g38609_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.2e-47 194.5 167 65.9
MBI08_g40283_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.2e-47 194.5 167 65.9
Cre10.g432500 Chlamydomonas reinhardtii HOM05D004602 ORTHO05D005906 1.0e-45 189.5 857 26.1
MBI08_g39158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 6.1e-38 163.7 140 65.7
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 2.5e-28 131.7 92 75.0
MBI11_g15185_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.5e-25 122.5 101 69.3
MBI05_g18177_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.0e-25 122.1 103 68.0
MELO3C008538.2 Cucumis melo HOM05D004602 ORTHO05D005906 3.0e-21 108.2 61 85.2
MBI05_g39343_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 8.8e-21 106.7 71 77.5
Lalb_Chr06g0173611 Lupinus albus HOM05D004602 ORTHO05D005906 3.3e-20 104.8 57 91.2
Psat7g124520 Pisum sativum HOM05D004602 ORTHO05D030491 8.2e-19 100.1 67 79.1
Psat7g124600 Pisum sativum HOM05D004602 ORTHO05D030491 8.2e-19 100.1 67 79.1
MBI16_g48278_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.2e-16 92.0 69 66.7
MBI08_g05534_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 4.2e-15 87.8 64 70.3
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 8.5e-08 63.5 146 26.0
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 3.2e-07 61.6 145 27.6
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 4.2e-07 61.2 145 27.6
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 5.5e-07 60.8 144 26.4
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 5.5e-07 60.8 145 27.6
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 7.2e-07 60.5 130 26.9
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 7.2e-07 60.5 145 27.6
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 9.4e-07 60.1 145 26.9
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 9.4e-07 60.1 145 26.9
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 1.2e-06 59.7 145 26.9
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 1.6e-06 59.3 145 26.9
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 1.6e-06 59.3 146 25.3
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 1.6e-06 59.3 140 27.1
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 2.1e-06 58.9 145 26.9
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 2.1e-06 58.9 145 26.9
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 2.1e-06 58.9 145 26.9
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 2.7e-06 58.5 145 26.2
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 2.7e-06 58.5 132 27.3
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 2.7e-06 58.5 145 27.6
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 3.6e-06 58.2 132 25.8
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 3.6e-06 58.2 132 26.5
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 3.6e-06 58.2 132 25.8
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 3.6e-06 58.2 132 25.8
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 3.6e-06 58.2 145 26.9
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 4.7e-06 57.8 132 25.8
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 4.7e-06 57.8 132 25.8
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 4.7e-06 57.8 132 25.8
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 4.7e-06 57.8 132 25.8
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 4.7e-06 57.8 132 25.8
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 4.7e-06 57.8 141 27.0
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 4.7e-06 57.8 146 24.7
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 4.7e-06 57.8 146 24.7
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 4.7e-06 57.8 146 24.7
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 6.1e-06 57.4 145 25.5
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 6.1e-06 57.4 130 26.2
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 6.1e-06 57.4 145 25.5
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 6.1e-06 57.4 145 25.5
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 8.0e-06 57.0 132 25.8
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 8.0e-06 57.0 132 25.8
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 8.0e-06 57.0 132 25.8
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 8.0e-06 57.0 130 25.4
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 8.0e-06 57.0 145 26.2
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 8.0e-06 57.0 145 25.5
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 8.0e-06 57.0 132 25.0


User provided reference genes

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