Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.4e-137 493.0 258 100.0
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.0e-129 466.8 258 95.0
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.7e-125 452.2 251 94.4
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 2.9e-124 448.7 251 94.4
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 6.3e-119 431.0 322 76.1
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 1.0e-116 423.7 254 89.0
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 3.3e-107 392.1 255 83.1
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 3.7e-103 378.6 251 81.7
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 3.0e-100 369.0 254 78.0
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 3.3e-99 365.5 255 77.3
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 4.3e-99 365.2 255 77.6
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 2.8e-98 362.5 256 75.4
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 1.4e-97 360.1 251 76.5
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 4.0e-97 358.6 258 74.0
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 4.4e-96 355.1 259 74.1
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 2.9e-95 352.4 252 74.2
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 6.4e-95 351.3 258 73.3
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 8.3e-95 350.9 262 72.9
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 4.1e-94 348.6 255 74.5
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 4.1e-94 348.6 232 77.2
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 7.1e-94 347.8 211 83.4
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 9.2e-94 347.4 259 72.2
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 1.2e-93 347.1 269 71.7
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 1.6e-93 346.7 251 75.3
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 2.1e-93 346.3 252 74.6
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 2.7e-93 345.9 259 73.0
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 6.0e-93 344.7 252 71.8
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 1.3e-92 343.6 253 72.7
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 1.3e-92 343.6 202 85.1
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 1.7e-92 343.2 265 69.4
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 2.3e-92 342.8 255 73.3
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 5.1e-92 341.7 213 81.7
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 5.1e-92 341.7 253 72.3
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 5.1e-92 341.7 242 76.0
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 6.6e-92 341.3 253 71.5
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 8.6e-92 340.9 257 71.2
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 8.6e-92 340.9 219 77.2
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 1.1e-91 340.5 254 72.4
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.1e-91 340.5 261 71.3
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 1.9e-91 339.7 258 70.5
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 3.3e-91 339.0 218 81.2
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 4.3e-91 338.6 262 71.8
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 4.3e-91 338.6 259 71.8
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 4.3e-91 338.6 253 73.1
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 7.3e-91 337.8 253 72.7
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 9.5e-91 337.4 254 72.0
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 9.5e-91 337.4 263 70.3
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 9.5e-91 337.4 254 70.9
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 1.2e-90 337.0 262 71.4
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 1.2e-90 337.0 244 71.7
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 1.6e-90 336.7 245 72.2
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 2.1e-90 336.3 253 71.9
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 2.8e-90 335.9 263 69.2
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.8e-90 335.9 201 84.1
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 3.6e-90 335.5 262 70.2
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 6.2e-90 334.7 262 69.8
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 6.2e-90 334.7 257 70.4
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 8.1e-90 334.3 257 70.8
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 1.1e-89 334.0 230 74.3
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 1.8e-89 333.2 251 70.5
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 1.8e-89 333.2 266 68.0
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 1.8e-89 333.2 261 69.3
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 2.3e-89 332.8 216 77.3
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 4.0e-89 332.0 237 72.6
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 6.8e-89 331.3 215 77.7
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 6.8e-89 331.3 209 78.5
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 6.8e-89 331.3 231 73.2
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 8.9e-89 330.9 263 69.6
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 8.9e-89 330.9 214 78.5
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 1.2e-88 330.5 215 77.7
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 1.2e-88 330.5 231 72.7
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 1.2e-88 330.5 227 76.7
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 1.5e-88 330.1 198 81.8
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 1.5e-88 330.1 198 81.8
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 1.5e-88 330.1 224 75.4
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 1.5e-88 330.1 258 69.4
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 2.0e-88 329.7 224 75.4
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 2.0e-88 329.7 224 75.4
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 2.6e-88 329.3 224 75.4
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 3.4e-88 328.9 216 76.4
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 3.4e-88 328.9 216 76.4
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 4.4e-88 328.6 224 75.0
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 9.9e-88 327.4 234 71.4
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 9.9e-88 327.4 261 67.4
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 1.3e-87 327.0 220 75.5
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 1.7e-87 326.6 256 66.8
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 2.9e-87 325.9 254 68.9
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 2.7e-85 319.3 201 78.1
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 5.1e-84 315.1 209 75.1
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 1.1e-83 313.9 202 76.7
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 1.1e-83 313.9 206 75.7
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 1.5e-83 313.5 210 73.3
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 7.3e-83 311.2 202 76.2
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 1.6e-82 310.1 245 68.6
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 8.1e-82 307.8 218 72.0
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 1.5e-80 303.5 222 68.5
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 3.4e-80 302.4 245 64.5
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 1.1e-78 297.4 218 69.7
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.7e-77 292.7 181 82.3
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 2.7e-69 266.2 154 87.0
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.3e-68 263.1 184 76.1
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 3.0e-68 262.7 212 67.0
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 7.3e-67 258.1 189 75.1
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 4.8e-66 255.4 169 73.4
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 1.1e-65 254.2 254 58.7
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 3.2e-62 242.7 154 76.6
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 7.1e-62 241.5 198 62.1
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 1.0e-60 237.7 156 78.2
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 8.7e-60 234.6 154 78.6
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.5e-59 233.8 161 76.4
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 8.1e-58 228.0 195 57.4
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 7.4e-51 204.9 131 74.8
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 6.9e-49 198.4 128 75.0
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 9.0e-49 198.0 191 50.3
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 2.0e-48 196.8 131 74.0
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 2.2e-47 193.4 127 74.8
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 9.3e-46 188.0 124 75.8
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 1.1e-30 137.9 70 91.4
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 2.5e-30 136.7 90 71.1
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 1.6e-29 134.0 252 38.9
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 3.6e-29 132.9 253 37.9
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 3.9e-28 129.4 76 85.5
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 4.8e-26 122.5 152 47.4
Lsat_1_v5_gn_0_46360 Lactuca sativa HOM05D005629 ORTHO05D008000 1.1e-22 111.3 124 57.3
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 7.5e-19 98.6 263 32.3
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 3.8e-15 86.3 209 31.1
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 9.4e-14 81.6 203 32.0
FvH4_6g53460 Fragaria vesca HOM05D005629 ORTHO05D022663 1.8e-12 77.4 188 37.8
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 1.5e-11 74.3 211 25.6
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 1.6e-08 64.3 59 59.3
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 5.9e-08 62.4 29 100.0
FvH4_6g53450 Fragaria vesca HOM05D005629 ORTHO05D008000 1.3e-07 61.2 45 66.7


User provided reference genes

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