Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2700 Fragaria x ananassa HOM05D002116 ORTHO05D017695 1.2e-28 129.0 60 100.0
FAN02G3045 Fragaria x ananassa HOM05D002116 ORTHO05D017695 1.2e-28 129.0 60 100.0
FvH4_6g31420 Fragaria vesca HOM05D002116 ORTHO05D002438 4.4e-23 110.5 52 98.1
FAN05G0300 Fragaria x ananassa HOM05D002116 ORTHO05D002438 4.4e-23 110.5 52 98.1
FAN14G0226 Fragaria x ananassa HOM05D002116 ORTHO05D002438 4.4e-23 110.5 52 98.1
FAN09G3138 Fragaria x ananassa HOM05D002116 ORTHO05D017695 2.2e-22 108.2 52 96.2
FAN28G2140 Fragaria x ananassa HOM05D002116 ORTHO05D002438 4.6e-20 100.5 52 86.5
FAN26G2820 Fragaria x ananassa HOM05D002116 ORTHO05D002438 7.8e-20 99.8 52 86.5
RcHm_v2.0_Chr2g0092051 Rosa chinensis HOM05D002116 ORTHO05D002438 1.0e-19 99.4 52 86.5
FvH4_1g06360 Fragaria vesca HOM05D002116 ORTHO05D002438 5.0e-19 97.1 52 80.8
Prupe.7G218300 Prunus persica HOM05D002116 ORTHO05D002438 8.6e-19 96.3 52 84.6
QL02p040919 Quercus lobata HOM05D002116 ORTHO05D002438 7.3e-18 93.2 52 78.8
FAN19G0837 Fragaria x ananassa HOM05D002116 ORTHO05D002438 2.8e-17 91.3 52 76.9
Nn8g39047 Nelumbo nucifera HOM05D002116 ORTHO05D002438 4.7e-17 90.5 51 78.4
MD02G1067200 Malus domestica HOM05D002116 ORTHO05D002438 6.2e-17 90.1 52 80.8
PGR102G0653 Punica granatum HOM05D002116 ORTHO05D002438 1.4e-16 89.0 52 75.0
MD02G1067100 Malus domestica HOM05D002116 ORTHO05D002438 3.1e-16 87.8 52 78.8
Glyma.01G006700 Glycine max HOM05D002116 ORTHO05D002438 4.0e-16 87.4 52 73.1
TAR624G0944 Trochodendron aralioides HOM05D002116 ORTHO05D002438 5.2e-16 87.0 51 74.5
Atru.chr7.1476 Acer truncatum HOM05D002116 ORTHO05D002438 6.8e-16 86.7 52 73.1
Eucgr.C03720 Eucalyptus grandis HOM05D002116 ORTHO05D002438 6.8e-16 86.7 52 71.2
BcaB08g36570 Brassica carinata HOM05D002116 ORTHO05D002438 1.2e-15 85.9 51 72.5
BNapus_Darmor_BZH_scaffold_38p02160 Brassica napus HOM05D002116 ORTHO05D002438 1.2e-15 85.9 51 72.5
BcaC04g19372 Brassica carinata HOM05D002116 ORTHO05D002438 2.6e-15 84.7 51 70.6
C09p56420 Brassica napus HOM05D002116 ORTHO05D002438 2.6e-15 84.7 51 70.6
BolC9t58510H Brassica oleracea HOM05D002116 ORTHO05D002438 2.6e-15 84.7 51 70.6
Migut.J01091 Erythranthe guttata HOM05D002116 ORTHO05D002438 2.6e-15 84.7 51 72.5
Lj7C666T8 Lonicera japonica HOM05D002116 ORTHO05D002438 2.6e-15 84.7 51 72.5
VMungo0464G2052 Vigna mungo HOM05D002116 ORTHO05D002438 3.4e-15 84.3 52 71.2
A10p19980 Brassica napus HOM05D002116 ORTHO05D002438 4.4e-15 84.0 51 68.6
Lj2g0007985 Lotus japonicus HOM05D002116 ORTHO05D002438 4.4e-15 84.0 52 69.2
BcaC03g13706 Brassica carinata HOM05D002116 ORTHO05D002438 5.8e-15 83.6 51 70.6
BolC2t06977H Brassica oleracea HOM05D000165 ORTHO05D000719 5.8e-15 83.6 51 70.6
CANSAT56G2830 Cannabis sativa HOM05D002116 ORTHO05D002438 5.8e-15 83.6 52 69.2
CANSAT56G4408 Cannabis sativa HOM05D002116 ORTHO05D002438 5.8e-15 83.6 52 69.2
PSO135G0464 Papaver somniferum HOM05D002116 ORTHO05D002438 5.8e-15 83.6 51 74.5
GSVIVG01015288001 Vitis vinifera HOM05D002116 ORTHO05D002438 5.8e-15 83.6 51 72.5
Dinv42255 Davidia involucrata HOM05D002116 ORTHO05D002438 7.5e-15 83.2 51 72.5
Actinidia39778 Actinidia chinensis HOM05D002116 ORTHO05D002438 9.8e-15 82.8 51 68.6
Lj2g0016602 Lotus japonicus HOM05D002116 ORTHO05D002438 9.8e-15 82.8 51 70.6
ATR0705G099 Amborella trichopoda HOM05D002116 ORTHO05D002438 1.3e-14 82.4 51 66.7
TWI34G0559 Tripterygium wilfordii HOM05D002116 ORTHO05D002438 1.3e-14 82.4 49 73.5
Aqoxy7G01386 Aquilegia oxysepala HOM05D002116 ORTHO05D002438 1.7e-14 82.0 51 70.6
CiPaw.04G155600 Carya illinoinensis HOM05D002116 ORTHO05D002438 1.7e-14 82.0 51 72.5
Actinidia32647 Actinidia chinensis HOM05D002116 ORTHO05D002438 2.2e-14 81.6 52 69.2
Thhalv10012881m.g Eutrema salsugineum HOM05D002116 ORTHO05D002438 2.2e-14 81.6 51 70.6
Lj2g0019532 Lotus japonicus HOM05D002116 ORTHO05D002438 2.2e-14 81.6 51 68.6
SGA_v2.0_scaffold10G05168 Striga asiatica HOM05D002116 ORTHO05D002438 2.2e-14 81.6 52 69.2
Gohir.D06G066400 Gossypium hirsutum HOM05D002116 ORTHO05D002438 2.9e-14 81.3 52 71.2
Gorai.010G077900 Gossypium raimondii HOM05D002116 ORTHO05D002438 2.9e-14 81.3 52 71.2
THA.LOC104811076 Tarenaya hassleriana HOM05D002116 ORTHO05D002438 2.9e-14 81.3 51 68.6
COL.COLO4_34729 Corchorus olitorius HOM05D002116 ORTHO05D002438 3.7e-14 80.9 52 71.2
Rhsim03G0236300 Rhododendron simsii HOM05D002116 ORTHO05D002438 3.7e-14 80.9 52 71.2
Cfa003166 Carpinus fangiana HOM05D002116 ORTHO05D002438 4.9e-14 80.5 52 71.2
Duzib168G0173 Durio zibethinus HOM05D002116 ORTHO05D002438 4.9e-14 80.5 52 69.2
MD15G1197700 Malus domestica HOM05D002116 ORTHO05D002438 4.9e-14 80.5 43 83.7
Aqoxy7G04127 Aquilegia oxysepala HOM05D002116 ORTHO05D002438 6.4e-14 80.1 51 68.6
arahy.Tifrunner.gnm1.ann1.NSGB9G Arachis hypogaea HOM05D002116 ORTHO05D002438 6.4e-14 80.1 52 65.4
Ca_06150_v3 Cicer arietinum L. HOM05D002116 ORTHO05D002438 8.3e-14 79.7 51 66.7
Gohir.A06G067800 Gossypium hirsutum HOM05D002116 ORTHO05D002438 8.3e-14 79.7 52 71.2
Thecc.09G099200 Theobroma cacao HOM05D002116 ORTHO05D002438 8.3e-14 79.7 51 70.6
Actinidia17516 Actinidia chinensis HOM05D002116 ORTHO05D002438 1.1e-13 79.3 51 66.7
AT5G19740 Arabidopsis thaliana HOM05D002116 ORTHO05D002438 1.1e-13 79.3 51 68.6
Carub.0006s1809 Capsella rubella HOM05D002116 ORTHO05D002438 1.1e-13 79.3 51 66.7
Haze_25833 Corylus avellana HOM05D002116 ORTHO05D002438 1.1e-13 79.3 52 69.2
Potri.006G153300 Populus trichocarpa HOM05D002116 ORTHO05D002438 1.1e-13 79.3 51 68.6
Sabra06G0121400 Salix brachista HOM05D002116 ORTHO05D002438 1.1e-13 79.3 51 70.6
arahy.Tifrunner.gnm1.ann1.828D94 Arachis hypogaea HOM05D002116 ORTHO05D002438 1.4e-13 79.0 52 65.4
MSTRG.6024 Avicennia marina HOM05D002116 ORTHO05D002438 1.9e-13 78.6 52 67.3
Oeu018579.1 Olea europaea HOM05D002116 ORTHO05D002438 1.9e-13 78.6 52 65.4
Duzib187G0032 Durio zibethinus HOM05D002116 ORTHO05D002438 2.4e-13 78.2 52 69.2
Sp6g24650 Schrenkiella parvula HOM05D002116 ORTHO05D002438 2.4e-13 78.2 51 64.7
Sed0020520 Sechium edule HOM05D002116 ORTHO05D002438 2.4e-13 78.2 54 63.0
PSO832G0427 Papaver somniferum HOM05D002116 ORTHO05D002438 3.2e-13 77.8 51 68.6
Ciclev10007621m.g Citrus clementina HOM05D002116 ORTHO05D002438 4.1e-13 77.4 52 65.4
DCAR_012036 Daucus carota HOM05D002116 ORTHO05D002438 4.1e-13 77.4 51 68.6
Manes.03G027700 Manihot esculenta HOM05D002116 ORTHO05D002438 4.1e-13 77.4 52 67.3
ATR0705G108 Amborella trichopoda HOM05D002116 ORTHO05D002438 5.4e-13 77.0 51 62.7
Psat1g048000 Pisum sativum HOM05D002116 ORTHO05D002438 5.4e-13 77.0 51 62.7
SalBow6G1385 Salvia bowleyana HOM05D002116 ORTHO05D002438 5.4e-13 77.0 51 66.7
ECA240G4793 Erigeron canadensis HOM05D002116 ORTHO05D002438 7.1e-13 76.6 52 65.4
ECA240G3218 Erigeron canadensis HOM05D002116 ORTHO05D002438 9.2e-13 76.3 51 64.7
ECA240G3634 Erigeron canadensis HOM05D002116 ORTHO05D002438 9.2e-13 76.3 51 64.7
CSS0006001 Camellia sinensis var. sinensis HOM05D002116 ORTHO05D002438 1.2e-12 75.9 51 64.7
Cc06_g10580 Coffea canephora HOM05D002116 ORTHO05D002438 1.2e-12 75.9 51 62.7
Rhsim05G0039000 Rhododendron simsii HOM05D002116 ORTHO05D002438 1.6e-12 75.5 52 63.5
PGSC0003DMG400000356 Solanum tuberosum HOM05D002116 ORTHO05D002438 1.6e-12 75.5 52 61.5
vmacro06256 Vaccinium macrocarpon HOM05D002116 ORTHO05D002438 2.1e-12 75.1 52 63.5
HanXRQChr03g0061051 Helianthus annuus HOM05D002116 ORTHO05D002438 2.7e-12 74.7 51 62.7
Medtr6g088825 Medicago truncatula HOM05D002116 ORTHO05D002438 3.5e-12 74.3 52 63.5
Peaxi162Scf00944g00023 Petunia axillaris HOM05D002116 ORTHO05D002438 3.5e-12 74.3 51 66.7
AL6G31260 Arabidopsis lyrata HOM05D002116 ORTHO05D002438 7.8e-12 73.2 53 66.0
Lsat_1_v5_gn_7_39601 Lactuca sativa HOM05D002116 ORTHO05D002438 7.8e-12 73.2 51 62.7
Sopen12g003490 Solanum pennellii HOM05D002116 ORTHO05D002438 7.8e-12 73.2 52 59.6
Os01g0743300 Oryza sativa ssp. japonica HOM05D002116 ORTHO05D002438 1.0e-11 72.8 52 57.7
SEGI_32772 Sequoiadendron giganteum HOM05D002116 ORTHO05D002438 1.3e-11 72.4 52 59.6
HPP92_022964 Vanilla planifolia HOM05D002116 ORTHO05D002438 1.3e-11 72.4 52 59.6
Solyc12g008550.3 Solanum lycopersicum HOM05D002116 ORTHO05D002438 3.9e-11 70.9 52 57.7
CAN.G943.1 Capsicum annuum HOM05D002116 ORTHO05D002438 6.6e-11 70.1 51 58.8
HPP92_022966 Vanilla planifolia HOM05D002116 ORTHO05D002438 6.6e-11 70.1 52 55.8
SEGI_32278 Sequoiadendron giganteum HOM05D002116 ORTHO05D002438 1.1e-10 69.3 49 55.1
HPP92_007686 Vanilla planifolia HOM05D002116 ORTHO05D002438 9.5e-10 66.2 47 59.6
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 1.2e-09 65.9 51 54.9
Zm00001eb153710 Zea mays HOM05D002116 ORTHO05D002438 2.1e-09 65.1 51 54.9
Os01g0740500 Oryza sativa ssp. japonica HOM05D002116 ORTHO05D002438 4.7e-09 63.9 50 50.0
SMO236G0049 Selaginella moellendorffii HOM05D002116 ORTHO05D002438 6.2e-09 63.5 46 56.5
Os01g0740600 Oryza sativa ssp. japonica HOM05D002116 ORTHO05D017695 1.8e-08 62.0 51 52.9
Gohir.A07G087800 Gossypium hirsutum HOM05D002116 ORTHO05D002438 4.0e-08 60.8 49 51.0
Gohir.D07G092700 Gossypium hirsutum HOM05D002116 ORTHO05D002438 4.0e-08 60.8 49 51.0
Gorai.001G099300 Gossypium raimondii HOM05D002116 ORTHO05D002438 4.0e-08 60.8 49 51.0
Pp3c8_14530 Physcomitrium patens HOM05D002116 ORTHO05D002438 4.0e-08 60.8 45 62.2
Pp3c8_14531 Physcomitrium patens HOM05D002116 ORTHO05D002438 4.0e-08 60.8 45 62.2
Pp3c24_6510 Physcomitrium patens HOM05D002116 ORTHO05D002438 6.8e-08 60.1 38 68.4
Pp3c24_6511 Physcomitrium patens HOM05D002116 ORTHO05D002438 6.8e-08 60.1 38 68.4
Cpa.g.sc222.2 Carica papaya HOM05D002116 ORTHO05D002438 2.6e-07 58.2 48 52.1
Duzib106G0200 Durio zibethinus HOM05D002116 ORTHO05D002438 4.4e-07 57.4 49 49.0
SEGI_32561 Sequoiadendron giganteum HOM05D002116 ORTHO05D002438 4.4e-07 57.4 43 51.2
SMO343G0083 Selaginella moellendorffii HOM05D002116 ORTHO05D002438 5.8e-07 57.0 45 48.9
SMO343G0097 Selaginella moellendorffii HOM05D002116 ORTHO05D002438 5.8e-07 57.0 45 48.9
SMO367G0865 Selaginella moellendorffii HOM05D002116 ORTHO05D002438 5.8e-07 57.0 45 48.9
PSO339G3556 Papaver somniferum HOM05D002116 ORTHO05D002438 7.6e-07 56.6 49 49.0
PSO384G1233 Papaver somniferum HOM05D002116 ORTHO05D002438 7.6e-07 56.6 49 49.0
SMO367G0205 Selaginella moellendorffii HOM05D002116 ORTHO05D002438 7.6e-07 56.6 46 52.2
FAN05G1287 Fragaria x ananassa HOM05D002116 ORTHO05D002438 9.9e-07 56.2 52 50.0
FAN05G1646 Fragaria x ananassa HOM05D002116 ORTHO05D002438 9.9e-07 56.2 52 50.0
FAN26G1227 Fragaria x ananassa HOM05D002116 ORTHO05D002438 9.9e-07 56.2 31 80.6
CDE10G1229 Ceratophyllum demersum HOM05D002116 ORTHO05D002438 1.3e-06 55.8 48 43.8
MD12G1047100 Malus domestica HOM05D002116 ORTHO05D002438 1.3e-06 55.8 49 46.9
MD14G1046000 Malus domestica HOM05D002116 ORTHO05D002438 1.3e-06 55.8 48 45.8
ATR0697G073 Amborella trichopoda HOM05D002116 ORTHO05D002438 1.7e-06 55.5 47 55.3
RcHm_v2.0_Chr3g0477621 Rosa chinensis HOM05D002116 ORTHO05D002438 2.2e-06 55.1 51 47.1
THA.LOC104825265 Tarenaya hassleriana HOM05D002116 ORTHO05D002438 2.2e-06 55.1 48 47.9
arahy.Tifrunner.gnm1.ann1.77RLVP Arachis hypogaea HOM05D002116 ORTHO05D002438 2.9e-06 54.7 52 42.3
arahy.Tifrunner.gnm1.ann1.R5ZN5G Arachis hypogaea HOM05D002116 ORTHO05D002438 2.9e-06 54.7 52 42.3
CDE10G0282 Ceratophyllum demersum HOM05D002116 ORTHO05D002438 2.9e-06 54.7 58 39.7
Duzib093G1344 Durio zibethinus HOM05D002116 ORTHO05D002438 2.9e-06 54.7 49 44.9
FAN02G0379 Fragaria x ananassa HOM05D002116 ORTHO05D002438 2.9e-06 54.7 50 46.0
QL07p025891 Quercus lobata HOM05D002116 ORTHO05D002438 2.9e-06 54.7 55 41.8
FvH4_6g21160 Fragaria vesca HOM05D002116 ORTHO05D002438 3.7e-06 54.3 50 46.0
FAN14G3679 Fragaria x ananassa HOM05D002116 ORTHO05D002438 3.7e-06 54.3 50 46.0
HanXRQChr07g0197011 Helianthus annuus HOM05D002116 ORTHO05D002438 3.7e-06 54.3 55 45.5
GSVIVG01022505001 Vitis vinifera HOM05D002116 ORTHO05D002438 3.7e-06 54.3 50 48.0
ClCG10G017890 Citrullus lanatus HOM05D002116 ORTHO05D002438 4.9e-06 53.9 55 41.8
Prupe.7G088100 Prunus persica HOM05D002116 ORTHO05D002438 4.9e-06 53.9 48 47.9
Haze_20091 Corylus avellana HOM05D002116 ORTHO05D002438 6.4e-06 53.5 49 46.9
Dinv11910 Davidia involucrata HOM05D002116 ORTHO05D002438 6.4e-06 53.5 47 51.1
CSS0001789 Camellia sinensis var. sinensis HOM05D002116 ORTHO05D002438 8.4e-06 53.1 48 47.9
MELO3C009584.2 Cucumis melo HOM05D002116 ORTHO05D002438 8.4e-06 53.1 55 41.8
CsaV3_3G038400 Cucumis sativus L. HOM05D002116 ORTHO05D002438 8.4e-06 53.1 55 41.8
Sed0000029 Sechium edule HOM05D002116 ORTHO05D002438 8.4e-06 53.1 49 49.0
TWI77G0852 Tripterygium wilfordii HOM05D002116 ORTHO05D002438 8.4e-06 53.1 49 46.9


User provided reference genes

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