Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 3559.6 1831 100.0
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 3456.8 1831 97.1
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 3434.4 1831 96.3
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 3405.9 1831 95.9
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 3241.8 1838 91.8
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 2914.4 1847 82.7
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2813.1 1845 79.6
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2803.1 1829 80.0
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 2686.0 1852 76.8
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 2678.7 1890 75.5
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 2659.4 1868 75.3
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2647.8 1858 75.3
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 2611.6 1847 74.7
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2588.1 1841 74.2
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 2580.8 1840 74.8
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 2564.3 1827 74.3
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2562.3 1846 74.4
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2545.8 1847 74.0
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2536.1 1835 73.4
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 2533.1 1843 73.0
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2531.9 1882 72.2
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 2531.1 1845 73.0
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2528.1 1849 73.6
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 2525.4 1864 72.8
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 2523.0 1846 73.0
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 2520.3 1825 73.5
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 2499.2 1828 72.6
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2491.8 1854 72.1
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 2490.3 1828 72.4
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 2477.6 1845 71.5
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 2466.0 1850 70.1
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2459.9 1820 72.3
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2455.2 1846 71.0
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2454.5 1845 70.9
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 2449.5 1846 71.1
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2437.9 1845 70.5
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 2437.5 1913 68.9
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2431.4 1840 70.0
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 2426.0 1866 70.9
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2423.7 1840 69.8
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2416.0 1846 69.7
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2411.3 1845 69.3
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 2408.3 1844 69.6
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2407.1 1853 70.1
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 2396.7 1847 69.0
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 2383.2 1854 70.2
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 2370.1 1856 69.0
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 2366.3 1841 69.6
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 2362.4 1840 69.3
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 2358.2 1846 69.2
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 2357.4 1814 69.2
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 2355.9 1919 67.0
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2354.7 1854 69.0
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2354.7 1854 69.0
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 2343.5 1845 69.3
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2333.9 1798 70.1
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2330.1 1843 68.9
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2309.3 1848 67.3
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 2307.3 1847 67.8
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2301.6 1848 67.2
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2289.6 1837 68.0
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2270.0 1846 67.6
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2261.9 1844 67.5
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 2261.1 1841 66.9
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 2254.6 1847 67.1
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2247.6 1846 66.3
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2243.4 1843 66.6
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 2219.9 1838 65.6
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 2206.0 1739 68.5
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 2204.1 1860 64.9
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2190.2 1843 65.8
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 2184.5 1840 65.2
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2160.2 1846 64.8
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2156.7 1835 65.0
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2105.5 1841 63.8
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2102.8 1837 64.3
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2102.4 1836 62.9
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2089.7 1836 62.5
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 2066.2 1843 62.9
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 2065.0 1843 62.8
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 2061.6 1838 62.8
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 2060.4 1842 62.7
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2034.6 1846 62.4
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 2033.5 1774 64.0
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 2026.5 1841 61.9
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 2025.8 1847 61.8
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 1984.1 1842 61.5
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1966.4 1836 60.8
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 1966.0 1836 60.8
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1962.6 1826 61.0
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1955.6 1834 58.9
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 1954.5 1893 58.4
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 1948.7 1847 60.3
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1910.2 1835 59.5
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1807.0 1852 55.2
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1780.8 1381 68.6
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1772.7 1856 53.9
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1692.9 1498 63.2
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1680.2 1583 61.0
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1648.3 1804 54.0
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1625.9 1350 64.7
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1619.0 1341 65.2
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 1615.9 866 96.9
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1615.1 1708 54.9
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1590.9 1371 64.3
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1585.9 1223 68.8
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1511.1 1311 63.8
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 1441.4 1805 50.0
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1402.9 1196 63.4
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 0.0e+00 1361.3 1992 43.7
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1271.5 1178 62.1
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 0.0e+00 1251.5 1857 42.5
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 0.0e+00 1240.7 1388 54.1
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1239.9 998 67.3
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1198.0 1933 40.7
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 0.0e+00 1178.7 1928 40.7
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1175.2 1983 39.4
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1153.7 1145 56.7
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 7.6e-259 898.7 1383 43.4
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 2.6e-235 820.5 1482 39.1
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 4.2e-217 760.0 528 76.5
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 3.6e-216 756.9 637 61.9
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 7.5e-206 722.6 481 77.1
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 1.1e-185 655.6 471 70.3
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 7.3e-185 652.9 609 59.6
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 8.0e-184 649.4 494 72.5
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 1.7e-170 605.1 555 59.6
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 4.7e-168 597.0 626 53.7
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 3.0e-162 577.8 369 82.4
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 2.2e-157 561.6 362 76.8
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 2.2e-157 561.6 339 85.5
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 1.2e-155 555.8 429 63.4
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 1.3e-154 552.4 360 74.4
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 9.0e-151 539.7 481 62.2
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 4.8e-136 490.7 393 69.2
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 1.4e-127 462.6 323 70.0
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 3.8e-117 427.9 261 83.9
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 4.4e-113 414.5 405 58.0
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 5.7e-113 414.1 436 56.2
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 2.0e-110 405.6 269 83.6
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 1.2e-81 310.1 304 60.9
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 1.3e-80 306.6 305 60.3
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 4.9e-80 304.7 309 61.2
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 2.4e-47 196.1 124 81.5
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 3.5e-46 192.2 132 72.7
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 1.5e-20 107.1 103 55.3
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 7.4e-20 104.8 71 77.5
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 4.8e-19 102.1 72 72.2
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 2.6e-17 96.3 71 67.6
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 5.5e-15 88.6 70 61.4
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 1.6e-14 87.0 70 60.0
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 6.1e-14 85.1 598 20.6
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 1.0e-13 84.3 206 28.6
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 2.3e-13 83.2 66 65.2
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 39 84.6
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.9e-12 80.1 34 97.1
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.9e-12 80.1 34 97.1
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.9e-12 80.1 34 97.1
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.9e-12 80.1 34 97.1
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 1.9e-12 80.1 34 97.1
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 3.3e-12 79.3 71 56.3
DCAR_027576 Daucus carota HOM05D004252 ORTHO05D005101 5.7e-12 78.6 96 51.0
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 5.9e-09 68.6 190 31.1
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 1.1e-07 64.3 37 83.8
Cre03.g190550 Chlamydomonas reinhardtii HOM05D004252 ORTHO05D005101 1.6e-06 60.5 166 28.3


User provided reference genes

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