Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 0.0e+00 1476.8 1380 100.0
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 0.0e+00 1311.2 1380 87.9
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 0.0e+00 1292.3 1380 88.0
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 0.0e+00 1287.7 1380 92.0
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 0.0e+00 1287.7 1380 92.0
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 0.0e+00 1246.5 1380 86.7
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 0.0e+00 1205.3 1380 82.0
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 9.4e-270 934.5 1394 65.6
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 8.3e-258 894.8 1393 64.3
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 1.4e-249 867.5 1398 63.4
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 5.1e-199 699.5 1406 47.6
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 8.8e-183 645.6 1389 49.4
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 4.3e-182 643.3 1408 54.1
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 4.8e-181 639.8 1392 51.0
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 4.1e-180 636.7 1392 50.8
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 1.4e-177 628.2 1389 49.4
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 4.2e-177 626.7 1544 42.1
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 1.1e-172 612.1 1392 51.9
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 4.1e-172 610.1 1477 48.1
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.9e-169 601.3 1385 47.9
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 2.5e-169 600.9 1396 52.7
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 3.0e-167 594.0 1105 46.6
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 1.1e-164 585.5 1389 50.0
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 3.6e-160 570.5 1388 45.6
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 4.0e-159 567.0 1394 54.7
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 8.8e-159 565.8 1380 47.3
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 3.3e-158 563.9 1387 47.5
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 6.3e-157 559.7 1395 50.9
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 5.7e-150 536.6 1426 50.4
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 8.3e-149 532.7 1384 54.0
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 4.1e-148 530.4 1384 54.0
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.2e-144 518.8 1384 53.5
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 3.0e-143 514.2 1434 44.0
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 2.6e-142 511.1 1404 51.4
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 1.3e-141 508.8 1306 43.9
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.7e-141 508.4 1391 52.0
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 1.4e-140 505.4 1597 41.1
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 7.8e-139 499.6 1567 41.9
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 3.3e-137 494.2 1392 51.1
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 1.0e-135 489.2 1389 50.9
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 2.3e-135 488.0 1389 48.5
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 2.3e-135 488.0 1316 46.7
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 3.4e-134 484.2 1385 43.8
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 3.2e-132 477.6 1380 44.7
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 2.7e-131 474.6 1389 45.5
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 1.0e-130 472.6 1391 43.7
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 6.6e-130 469.9 1364 43.1
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 8.6e-130 469.5 1398 41.6
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 1.9e-129 468.4 1592 38.0
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 3.3e-129 467.6 1341 42.2
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 4.3e-129 467.2 1392 44.6
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 2.1e-128 464.9 1367 42.3
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 1.2e-126 459.1 1589 36.1
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 1.6e-123 448.7 1389 46.4
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 6.0e-123 446.8 1310 42.7
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 7.8e-123 446.4 1580 40.0
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 3.9e-122 444.1 1368 43.2
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 2.1e-120 438.3 1385 40.4
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 1.5e-118 432.2 1389 47.7
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 2.9e-117 427.9 1118 43.3
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 4.6e-115 420.6 1622 31.8
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 2.0e-110 405.2 1504 40.9
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 7.6e-110 403.3 1392 46.2
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 1.7e-109 402.1 1394 40.1
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 1.4e-108 399.1 641 47.7
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 5.6e-105 387.1 635 49.3
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 5.3e-103 380.6 1381 45.8
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 5.1e-98 364.0 1451 37.1
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 4.3e-97 360.9 1579 35.3
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 7.3e-97 360.1 1563 37.0
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.3e-96 359.4 1396 43.1
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 1.5e-94 352.4 1397 46.0
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 5.8e-94 350.5 1395 44.1
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 6.4e-93 347.1 1430 37.3
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 4.2e-92 344.4 1397 37.1
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 7.9e-91 340.1 1400 44.1
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 1.0e-90 339.7 724 37.6
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 3.9e-90 337.8 1038 50.4
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 3.1e-87 328.2 1396 41.1
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 9.0e-87 326.6 1396 40.5
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 1.7e-85 322.4 1396 42.8
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 2.9e-85 321.6 767 33.4
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 5.5e-84 317.4 1594 31.3
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 1.1e-81 309.7 1154 43.0
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 4.6e-75 287.7 531 40.7
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 9.7e-73 280.0 1302 36.6
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 2.8e-72 278.5 1389 40.7
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 1.2e-70 273.1 1389 42.3
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 4.5e-70 271.2 1389 41.8
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 5.0e-69 267.7 1453 35.2
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 7.4e-57 227.3 300 49.7
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 5.9e-54 217.6 1296 30.9
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 3.2e-52 211.8 553 35.4
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 4.2e-52 211.5 239 62.3
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.7e-51 208.8 363 41.9
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 4.1e-47 194.9 372 40.1
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 5.9e-46 191.0 289 45.3
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 7.7e-46 190.7 222 52.7
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 8.5e-45 187.2 651 33.8
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.9e-44 186.0 613 30.0
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 7.2e-44 184.1 714 44.8
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 9.4e-44 183.7 1012 31.9
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 6.8e-42 177.6 1310 43.3
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.4e-39 169.9 334 38.0
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 2.4e-39 169.1 421 35.4
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 4.5e-38 164.9 416 32.9
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 1.0e-37 163.7 672 31.1
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 1.5e-36 159.8 294 42.9
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 4.2e-36 158.3 630 33.5
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.6e-35 155.2 425 38.4
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 2.3e-34 152.5 166 53.0
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 3.0e-34 152.1 385 33.0
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 4.0e-34 151.8 206 50.0
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 5.4e-31 141.4 630 33.5
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 1.0e-29 137.1 376 31.9
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 2.3e-29 136.0 187 55.1
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 2.9e-29 135.6 1275 40.3
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 3.3e-28 132.1 178 52.8
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 2.1e-27 129.4 414 31.4
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 2.3e-26 125.9 352 31.2
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 1.2e-25 123.6 178 50.0
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 1.7e-24 119.8 357 34.5
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 2.2e-24 119.4 141 49.6
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 6.3e-24 117.9 421 29.2
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 2.4e-23 115.9 651 33.3
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 9.2e-23 114.0 672 24.1
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 2.0e-22 112.8 364 33.2
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 2.0e-22 112.8 912 37.8
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 7.8e-22 110.9 107 58.9
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 1.7e-21 109.8 304 33.9
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 1.9e-20 106.3 198 37.9
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 1.9e-20 106.3 423 38.1
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 3.6e-19 102.1 398 27.4
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 6.1e-19 101.3 1397 33.2
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 1.0e-18 100.5 629 34.7
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 1.4e-18 100.1 372 31.5
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.8e-18 99.8 459 30.3
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 4.0e-18 98.6 364 32.7
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 4.0e-18 98.6 364 32.7
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 3.4e-17 95.5 155 54.8
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 4.4e-17 95.1 629 32.9
SEGI_00522 Sequoiadendron giganteum HOM05D003806 ORTHO05D004346 1.7e-16 93.2 376 25.3
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 2.2e-16 92.8 177 38.4
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 2.2e-16 92.8 177 38.4
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 7.0e-15 87.8 165 36.4
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 7.0e-15 87.8 165 36.4
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 7.0e-15 87.8 165 36.4
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 4.6e-14 85.1 120 50.0
HPP92_027643 Vanilla planifolia HOM05D003806 ORTHO05D004346 6.6e-13 81.3 183 32.8
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 8.6e-13 80.9 193 33.2
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 1.1e-12 80.5 144 50.0
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.9e-12 79.7 469 35.2
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.9e-12 79.7 193 32.6
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 6.2e-11 74.7 617 21.2
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 1.1e-10 73.9 350 34.6
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 1.8e-10 73.2 231 30.3
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 2.3e-10 72.8 398 23.9
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 1.5e-09 70.1 86 47.7
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 2.6e-09 69.3 182 37.4
Zm00001eb070840 Zea mays HOM05D003806 ORTHO05D004346 4.4e-09 68.6 87 46.0
unitig_699.g19629 Utricularia gibba HOM05D003806 ORTHO05D004346 5.8e-09 68.2 89 46.1
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 1.3e-08 67.0 345 29.3
MD09G1138300 Malus domestica HOM05D003806 ORTHO05D004346 1.7e-08 66.6 52 71.2
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 2.2e-08 66.2 90 50.0
CDE06G0039 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 3.7e-08 65.5 79 48.1
FAN15G0416 Fragaria x ananassa HOM05D020189 ORTHO05D015668 3.7e-08 65.5 40 85.0
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 1.4e-07 63.5 287 29.3
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 3.2e-07 62.4 83 48.2
FAN13G2891 Fragaria x ananassa HOM05D020189 ORTHO05D004346 5.4e-07 61.6 36 86.1
Dinv29619 Davidia involucrata HOM05D003806 ORTHO05D004346 1.2e-06 60.5 52 57.7


User provided reference genes

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