Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2853 Fragaria x ananassa HOM05D006785 ORTHO05D006259 2.1e-191 672.5 434 100.0
FAN05G2931 Fragaria x ananassa HOM05D006785 ORTHO05D006259 3.5e-138 495.7 390 86.2
FAN09G1973 Fragaria x ananassa HOM05D006785 ORTHO05D006259 1.7e-124 450.3 337 90.8
FAN14G2666 Fragaria x ananassa HOM05D006785 ORTHO05D006259 1.1e-123 447.6 329 97.3
RcHm_v2.0_Chr2g0151481 Rosa chinensis HOM05D006785 ORTHO05D006259 7.9e-98 361.7 329 84.8
Prupe.3G172600 Prunus persica HOM05D006785 ORTHO05D006259 4.1e-70 269.6 329 71.7
MD17G1139500 Malus domestica HOM05D006785 ORTHO05D006259 8.0e-58 228.8 242 71.9
MD09G1151900 Malus domestica HOM05D006785 ORTHO05D006259 2.9e-55 220.3 242 65.7
ClCG02G018390 Citrullus lanatus HOM05D006785 ORTHO05D006259 2.4e-46 190.7 329 47.4
MELO3C019688.2 Cucumis melo HOM05D006785 ORTHO05D006259 1.6e-45 188.0 341 55.1
TWI59G0461 Tripterygium wilfordii HOM05D006785 ORTHO05D006259 1.3e-44 184.9 325 52.6
CsaV3_6G015830 Cucumis sativus L. HOM05D006785 ORTHO05D006259 1.5e-43 181.4 337 42.4
Sed0007746 Sechium edule HOM05D006785 ORTHO05D006259 3.4e-40 170.2 323 48.6
CANSAT64G1891 Cannabis sativa HOM05D006785 ORTHO05D006259 1.7e-39 167.9 330 48.8
Sed0020726 Sechium edule HOM05D006785 ORTHO05D006259 2.7e-37 160.6 326 38.0
Cfa021376 Carpinus fangiana HOM05D006785 ORTHO05D006259 3.5e-37 160.2 334 51.2
QL08p044083 Quercus lobata HOM05D006785 ORTHO05D006259 1.6e-34 151.4 319 47.3
PGR042G2728 Punica granatum HOM05D006785 ORTHO05D006259 2.1e-34 151.0 328 42.4
Haze_13495 Corylus avellana HOM05D006785 ORTHO05D006259 3.6e-34 150.2 325 52.0
Manes.02G084200 Manihot esculenta HOM05D006785 ORTHO05D006259 1.4e-30 138.3 329 36.5
Carub.0001s0590 Capsella rubella HOM05D006785 ORTHO05D006259 1.3e-26 125.2 335 32.5
Actinidia32516 Actinidia chinensis HOM05D006785 ORTHO05D006259 1.4e-25 121.7 333 31.2
CSS0028256 Camellia sinensis var. sinensis HOM05D006785 ORTHO05D006259 6.9e-25 119.4 332 31.0
CSS0047125 Camellia sinensis var. sinensis HOM05D006785 ORTHO05D006259 6.9e-25 119.4 332 31.0
Dinv07090 Davidia involucrata HOM05D006785 ORTHO05D006259 1.2e-24 118.6 333 32.1
Cpa.g.sc50.80 Carica papaya HOM05D006785 ORTHO05D006259 2.0e-24 117.9 324 47.8
CiPaw.03G189000 Carya illinoinensis HOM05D006785 ORTHO05D006259 2.0e-24 117.9 330 35.8
Atru.chr6.2094 Acer truncatum HOM05D006785 ORTHO05D006259 5.8e-24 116.3 309 44.3
Manes.01G127500 Manihot esculenta HOM05D006785 ORTHO05D006259 9.9e-24 115.5 314 34.4
Gohir.A12G079000 Gossypium hirsutum HOM05D006785 ORTHO05D006259 2.2e-23 114.4 311 41.2
AT1G06530 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 2.9e-23 114.0 318 32.4
Lalb_Chr10g0106721 Lupinus albus HOM05D006785 ORTHO05D006259 1.9e-22 111.3 294 44.9
Gohir.D12G068400 Gossypium hirsutum HOM05D006785 ORTHO05D006259 1.0e-20 105.5 291 40.5
Gorai.008G098200 Gossypium raimondii HOM05D006785 ORTHO05D006259 2.3e-20 104.4 291 38.8
Sp4g24990 Schrenkiella parvula HOM05D006785 ORTHO05D006259 1.9e-19 101.3 325 35.4
Lalb_Chr17g0348301 Lupinus albus HOM05D006785 ORTHO05D006259 3.3e-19 100.5 297 43.1
Aa31LG5G5980 Aethionema arabicum HOM05D006785 ORTHO05D006259 1.1e-17 95.5 313 39.0
Ciclev10032336m.g Citrus clementina HOM05D006785 ORTHO05D006259 1.1e-17 95.5 306 45.1
VMungo0647G1995 Vigna mungo HOM05D006785 ORTHO05D006259 1.8e-17 94.7 313 43.1
THA.LOC104802276 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 6.9e-17 92.8 328 40.5
Ca_06284_v3 Cicer arietinum L. HOM05D006785 ORTHO05D006259 9.0e-17 92.4 316 42.1
TPR.G12660 Trifolium pratense HOM05D006785 ORTHO05D006259 1.2e-16 92.0 316 39.2
Medtr5g091710 Medicago truncatula HOM05D006785 ORTHO05D006259 2.6e-16 90.9 324 40.4
Thhalv10009835m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 9.9e-16 89.0 336 32.4
vmacro12460 Vaccinium macrocarpon HOM05D006785 ORTHO05D006259 3.8e-15 87.0 296 31.4
Carub.0005s2562 Capsella rubella HOM05D006785 ORTHO05D006259 4.9e-15 86.7 324 40.4
BraA05t19307Z Brassica rapa HOM05D006785 ORTHO05D006259 6.4e-15 86.3 235 31.9
C04p03820 Brassica napus HOM05D006785 ORTHO05D006259 1.1e-14 85.5 235 32.3
BcaB02g06783 Brassica carinata HOM05D006785 ORTHO05D006259 2.4e-14 84.3 234 52.1
BolC4t22018H Brassica oleracea HOM05D006785 ORTHO05D006259 2.4e-14 84.3 235 31.9
CARHR006150 Cardamine hirsuta HOM05D006785 ORTHO05D006259 3.2e-14 84.0 181 33.1
THA.LOC104800823 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 4.2e-14 83.6 202 29.7
Glyma.02G287000 Glycine max HOM05D006785 ORTHO05D006259 9.3e-14 82.4 313 37.7
Eucgr.A01969 Eucalyptus grandis HOM05D006785 ORTHO05D006259 1.2e-13 82.0 301 35.2
Thecc.01G161700 Theobroma cacao HOM05D006785 ORTHO05D006259 1.6e-13 81.6 290 41.4
Psat2g015800 Pisum sativum HOM05D006785 ORTHO05D006259 2.3e-12 77.8 315 39.0
C05p04790 Brassica napus HOM05D006785 ORTHO05D006259 3.9e-12 77.0 208 41.3
AT3G58840 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 6.7e-12 76.3 238 48.7
arahy.Tifrunner.gnm1.ann1.W4MS3F Arachis hypogaea HOM05D006785 ORTHO05D006259 6.7e-12 76.3 294 37.4
A07p24380 Brassica napus HOM05D006785 ORTHO05D006259 1.1e-11 75.5 235 46.4
Gohir.A05G378800 Gossypium hirsutum HOM05D006785 ORTHO05D006259 1.5e-11 75.1 167 43.1
Gorai.012G041600 Gossypium raimondii HOM05D006785 ORTHO05D006259 1.5e-11 75.1 167 43.1
Lalb_Chr05g0211951 Lupinus albus HOM05D006785 ORTHO05D006259 1.9e-11 74.7 157 36.9
Gohir.D04G036800 Gossypium hirsutum HOM05D006785 ORTHO05D006259 3.3e-11 73.9 167 42.5
BcaB02g07495 Brassica carinata HOM05D006785 ORTHO05D006259 4.3e-11 73.6 270 38.9
Duzib264G0099 Durio zibethinus HOM05D006785 ORTHO05D006259 9.6e-11 72.4 109 42.2
CARHR169250 Cardamine hirsuta HOM05D006785 ORTHO05D006259 1.3e-10 72.0 157 39.5
AL1G16560 Arabidopsis lyrata HOM05D006785 ORTHO05D006259 2.1e-10 71.2 312 31.7
arahy.Tifrunner.gnm1.ann1.PX2Y9B Arachis hypogaea HOM05D006785 ORTHO05D006259 3.7e-10 70.5 294 33.7
Nn3g20927 Nelumbo nucifera HOM05D006785 ORTHO05D006259 3.7e-10 70.5 363 25.9
Actinidia11204 Actinidia chinensis HOM05D006785 ORTHO05D006259 8.1e-10 69.3 101 41.6
Thhalv10006112m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 8.1e-10 69.3 234 29.9
Sp1g05290 Schrenkiella parvula HOM05D006785 ORTHO05D006259 8.1e-10 69.3 163 41.1
Phvul.008G191300 Phaseolus vulgaris HOM05D006785 ORTHO05D006259 2.4e-09 67.8 324 31.8
Potri.005G201400 Populus trichocarpa HOM05D006785 ORTHO05D006259 5.3e-09 66.6 310 37.1
BraA10t42785Z Brassica rapa HOM05D006785 ORTHO05D006259 6.9e-09 66.2 202 50.5
MBI10_g42732_MAGBIO Magnolia biondii HOM05D006785 ORTHO05D006259 2.6e-08 64.3 128 38.3
TAR627G0640 Trochodendron aralioides HOM05D006785 ORTHO05D006259 5.8e-08 63.2 104 39.4
Potri.002G060200 Populus trichocarpa HOM05D006785 ORTHO05D006259 7.6e-08 62.8 110 48.2
TAR629G3165 Trochodendron aralioides HOM05D006785 ORTHO05D006259 7.6e-08 62.8 99 36.4
Sp5g04020 Schrenkiella parvula HOM05D006785 ORTHO05D006259 2.2e-07 61.2 155 36.8
Aa31LG1G7630 Aethionema arabicum HOM05D006785 ORTHO05D006259 3.8e-07 60.5 128 32.8
DCAR_013314 Daucus carota HOM05D006785 ORTHO05D006259 6.5e-07 59.7 335 24.8
Duzib147G0591 Durio zibethinus HOM05D006785 ORTHO05D006259 6.5e-07 59.7 308 38.6
Lj1P620T12 Lonicera japonica HOM05D006785 ORTHO05D006259 1.4e-06 58.5 266 24.8
PSO675G6378 Papaver somniferum HOM05D006785 ORTHO05D006259 1.9e-06 58.2 92 38.0
Glyma.14G027900 Glycine max HOM05D006785 ORTHO05D006259 2.5e-06 57.8 324 35.2
Peaxi162Scf00111g00008 Petunia axillaris HOM05D009485 ORTHO05D006259 3.2e-06 57.4 124 36.3
LjContig00310g0014416 Lotus japonicus HOM05D006785 ORTHO05D006259 4.2e-06 57.0 339 30.7
TAR622G1344 Trochodendron aralioides HOM05D006785 ORTHO05D006259 4.2e-06 57.0 104 36.5
Aa31LG10G13400 Aethionema arabicum HOM05D006785 ORTHO05D006259 9.3e-06 55.8 198 35.4
PSO541G2000 Papaver somniferum HOM05D006785 ORTHO05D006259 9.3e-06 55.8 92 37.0


User provided reference genes

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