Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2510 Fragaria x ananassa HOM05D020287 ORTHO05D003103 1.6e-91 339.3 162 100.0
FAN11G3394 Fragaria x ananassa HOM05D020287 ORTHO05D003103 7.2e-44 181.0 153 63.4
FAN18G4410 Fragaria x ananassa HOM05D020287 ORTHO05D003103 1.8e-39 166.4 149 59.7
FAN16G1176 Fragaria x ananassa HOM05D020287 ORTHO05D003103 9.1e-39 164.1 149 60.4
FAN09G1227 Fragaria x ananassa HOM05D020287 ORTHO05D003103 2.6e-38 162.5 149 59.7
FAN21G0065 Fragaria x ananassa HOM05D001065 ORTHO05D003103 3.6e-27 125.6 129 54.3
FAN21G0171 Fragaria x ananassa HOM05D001065 ORTHO05D003103 3.6e-27 125.6 129 54.3
FAN25G2536 Fragaria x ananassa HOM05D001065 ORTHO05D003103 5.2e-26 121.7 129 54.3
FvH4_3g02280 Fragaria vesca HOM05D001065 ORTHO05D003103 6.7e-26 121.3 129 53.5
RcHm_v2.0_Chr5g0003401 Rosa chinensis HOM05D001065 ORTHO05D003103 1.5e-25 120.2 130 51.5
FAN06G3921 Fragaria x ananassa HOM05D021590 ORTHO05D208334 3.7e-16 89.0 143 43.4
Prupe.5G005400 Prunus persica HOM05D001065 ORTHO05D003103 4.8e-16 88.6 131 39.7
Prupe.4G022300 Prunus persica HOM05D001065 ORTHO05D003103 1.8e-15 86.7 136 38.2
SGA_v2.0_scaffold220G42645 Striga asiatica HOM05D001065 ORTHO05D003103 7.7e-14 81.3 125 38.4
MD05G1344100 Malus domestica HOM05D001065 ORTHO05D003103 3.8e-13 79.0 135 35.6
MD00G1206800 Malus domestica HOM05D001065 ORTHO05D003103 2.5e-12 76.3 138 34.1
Manes.18G001900 Manihot esculenta HOM05D001065 ORTHO05D003103 3.2e-12 75.9 132 35.6
Ciclev10001069m.g Citrus clementina HOM05D001065 ORTHO05D003103 7.2e-12 74.7 127 36.2
GSVIVG01013428001 Vitis vinifera HOM05D001065 ORTHO05D003103 7.2e-12 74.7 127 37.8
MELO3C017062.2 Cucumis melo HOM05D001065 ORTHO05D003103 2.7e-11 72.8 131 31.3
CsaV3_4G037680 Cucumis sativus L. HOM05D001065 ORTHO05D003103 2.7e-11 72.8 131 31.3
Sed0018640 Sechium edule HOM05D001065 ORTHO05D003103 2.7e-11 72.8 131 32.1
TWI36G1461 Tripterygium wilfordii HOM05D001065 ORTHO05D003103 2.7e-11 72.8 132 34.8
Medtr3g116120 Medicago truncatula HOM05D001065 ORTHO05D003103 1.0e-10 70.9 125 34.4
Dinv13759 Davidia involucrata HOM05D001065 ORTHO05D003103 1.4e-10 70.5 132 33.3
ClCG11G019090 Citrullus lanatus HOM05D001065 ORTHO05D003103 2.3e-10 69.7 131 32.8
arahy.Tifrunner.gnm1.ann1.W4A4ZK Arachis hypogaea HOM05D001065 ORTHO05D003103 3.0e-10 69.3 120 32.5
Dinv29376 Davidia involucrata HOM05D001065 ORTHO05D003103 3.0e-10 69.3 127 33.1
Nitab4.5_0001756g0010 Nicotiana tabacum HOM05D001065 ORTHO05D003103 3.0e-10 69.3 132 31.8
Phvul.009G008500 Phaseolus vulgaris HOM05D001065 ORTHO05D003103 3.0e-10 69.3 124 33.9
TPR.G38238 Trifolium pratense HOM05D001065 ORTHO05D003103 3.0e-10 69.3 120 35.0
arahy.Tifrunner.gnm1.ann1.L2XFJE Arachis hypogaea HOM05D001065 ORTHO05D003103 4.0e-10 68.9 120 32.5
Nn6g31623 Nelumbo nucifera HOM05D001065 ORTHO05D003103 4.0e-10 68.9 132 34.8
VMungo1309G2971 Vigna mungo HOM05D001065 ORTHO05D003103 4.0e-10 68.9 124 33.9
unitig_578.g16240 Utricularia gibba HOM05D001065 ORTHO05D003103 5.2e-10 68.6 127 35.4
Cpa.g.sc26.13 Carica papaya HOM05D001065 ORTHO05D003103 6.8e-10 68.2 119 37.8
SalBow6G3244 Salvia bowleyana HOM05D001065 ORTHO05D003103 6.8e-10 68.2 122 32.8
SGA_v2.0_scaffold227G43162 Striga asiatica HOM05D001065 ORTHO05D003103 6.8e-10 68.2 125 31.2
CiPaw.07G133400 Carya illinoinensis HOM05D001065 ORTHO05D003103 8.8e-10 67.8 131 32.8
Sc15g0004060 Simmondsia chinensis HOM05D001065 ORTHO05D003103 1.2e-09 67.4 131 32.8
Atru.chr13.59 Acer truncatum HOM05D001065 ORTHO05D003103 1.5e-09 67.0 124 32.3
CSS0035387 Camellia sinensis var. sinensis HOM05D001065 ORTHO05D003103 1.5e-09 67.0 133 31.6
Glyma.06G014400 Glycine max HOM05D001065 ORTHO05D003103 1.5e-09 67.0 124 33.1
Lj1g0025049 Lotus japonicus HOM05D001065 ORTHO05D003103 1.5e-09 67.0 120 34.2
MBI01_g28403_MAGBIO Magnolia biondii HOM05D001065 ORTHO05D003103 1.5e-09 67.0 119 32.8
MSTRG.24517 Avicennia marina HOM05D001065 ORTHO05D003103 2.0e-09 66.6 123 33.3
Glyma.04G014400 Glycine max HOM05D001065 ORTHO05D003103 2.0e-09 66.6 124 33.1
Gohir.D05G180900 Gossypium hirsutum HOM05D001065 ORTHO05D003103 2.0e-09 66.6 126 34.9
Gorai.009G185900 Gossypium raimondii HOM05D001065 ORTHO05D003103 2.0e-09 66.6 126 34.9
Ca_15384_v3 Cicer arietinum L. HOM05D001065 ORTHO05D003103 3.4e-09 65.9 126 33.3
Gohir.A05G177500 Gossypium hirsutum HOM05D001065 ORTHO05D003103 4.4e-09 65.5 126 34.9
Psat2g065040 Pisum sativum HOM05D001065 ORTHO05D003103 4.4e-09 65.5 125 32.0
Potri.002G004800 Populus trichocarpa HOM05D001065 ORTHO05D003103 5.7e-09 65.1 135 31.9
Lalb_Chr11g0061371 Lupinus albus HOM05D001065 ORTHO05D003103 7.5e-09 64.7 126 29.4
Cfa014139 Carpinus fangiana HOM05D001065 ORTHO05D000513 9.8e-09 64.3 127 31.5
DCAR_023022 Daucus carota HOM05D001065 ORTHO05D003103 9.8e-09 64.3 131 32.8
FAN06G1841 Fragaria x ananassa HOM05D020287 ORTHO05D207694 9.8e-09 64.3 42 71.4
Duzib041G0437 Durio zibethinus HOM05D001065 ORTHO05D003103 1.3e-08 63.9 126 34.9
Solyc04g082760.3 Solanum lycopersicum HOM05D001065 ORTHO05D003103 1.3e-08 63.9 132 32.6
Sopen04g036400 Solanum pennellii HOM05D001065 ORTHO05D003103 1.3e-08 63.9 132 32.6
PGSC0003DMG400009998 Solanum tuberosum HOM05D001065 ORTHO05D003103 1.3e-08 63.9 132 32.6
TAR376G1201 Trochodendron aralioides HOM05D001065 ORTHO05D003103 1.3e-08 63.9 132 32.6
Actinidia17078 Actinidia chinensis HOM05D001065 ORTHO05D003103 1.7e-08 63.5 131 30.5
Eucgr.F01821 Eucalyptus grandis HOM05D001065 ORTHO05D003103 1.7e-08 63.5 137 31.4
Lj4A811T124 Lonicera japonica HOM05D001065 ORTHO05D003103 1.7e-08 63.5 145 30.3
Actinidia15525 Actinidia chinensis HOM05D001065 ORTHO05D003103 2.2e-08 63.2 131 29.8
Sabra02G0003200 Salix brachista HOM05D001065 ORTHO05D003103 2.8e-08 62.8 135 31.1
CAN.G1330.12 Capsicum annuum HOM05D001065 ORTHO05D003103 3.7e-08 62.4 132 31.1
vmacro21766 Vaccinium macrocarpon HOM05D001065 ORTHO05D003103 3.7e-08 62.4 129 33.3
Aqoxy7G04038 Aquilegia oxysepala HOM05D001065 ORTHO05D003103 4.9e-08 62.0 127 32.3
Carub.0004s1524 Capsella rubella HOM05D001065 ORTHO05D003103 4.9e-08 62.0 131 30.5
CDE05G0552 Ceratophyllum demersum HOM05D001065 ORTHO05D003103 4.9e-08 62.0 128 32.0
Sp4g15960 Schrenkiella parvula HOM05D001065 ORTHO05D003103 4.9e-08 62.0 124 33.1
THA.LOC104806869 Tarenaya hassleriana HOM05D001065 ORTHO05D003103 6.3e-08 61.6 131 32.1
AUR62035171 Chenopodium quinoa HOM05D001065 ORTHO05D003103 1.1e-07 60.8 145 29.7
Duzib116G0376 Durio zibethinus HOM05D001065 ORTHO05D003103 1.1e-07 60.8 123 30.9
Aa31LG9G13540 Aethionema arabicum HOM05D001065 ORTHO05D003103 1.4e-07 60.5 125 34.4
BcaB06g28706 Brassica carinata HOM05D001065 ORTHO05D003103 1.4e-07 60.5 124 33.1
AL4G29280 Arabidopsis lyrata HOM05D001065 ORTHO05D003103 2.4e-07 59.7 124 32.3
A04p25870 Brassica napus HOM05D000236 ORTHO05D003103 2.4e-07 59.7 124 32.3
BraA04t18089Z Brassica rapa HOM05D001065 ORTHO05D003103 2.4e-07 59.7 124 32.3
CARHR127630 Cardamine hirsuta HOM05D001065 ORTHO05D003103 2.4e-07 59.7 124 30.6
PGR083G0789 Punica granatum HOM05D001065 ORTHO05D003103 2.4e-07 59.7 136 32.4
Hund01833 Selenicereus undatus HOM05D001065 ORTHO05D003103 2.4e-07 59.7 126 29.4
HPP92_013560 Vanilla planifolia HOM05D001065 ORTHO05D003103 2.4e-07 59.7 124 34.7
BcaC02g07806 Brassica carinata HOM05D001065 ORTHO05D003103 3.1e-07 59.3 119 31.9
C04p63140 Brassica napus HOM05D001065 ORTHO05D003103 3.1e-07 59.3 119 31.9
BolC4t27786H Brassica oleracea HOM05D001065 ORTHO05D003103 3.1e-07 59.3 119 31.9
EL10Ac1g01870 Beta vulgaris HOM05D001065 ORTHO05D003103 4.1e-07 58.9 139 30.9
CDE05G3146 Ceratophyllum demersum HOM05D001065 ORTHO05D003103 5.4e-07 58.5 128 31.2
COL.COLO4_12297 Corchorus olitorius HOM05D001065 ORTHO05D003103 5.4e-07 58.5 120 32.5
AT2G33610 Arabidopsis thaliana HOM05D001065 ORTHO05D003103 7.0e-07 58.2 124 29.0
PSO541G2552 Papaver somniferum HOM05D001065 ORTHO05D003103 9.2e-07 57.8 134 27.6
CANSAT78G2419 Cannabis sativa HOM05D001065 ORTHO05D003103 1.2e-06 57.4 120 29.2
Migut.N02988 Erythranthe guttata HOM05D001065 ORTHO05D003103 1.6e-06 57.0 133 27.8
Haze_22864 Corylus avellana HOM05D001065 ORTHO05D003103 2.0e-06 56.6 134 27.6
Hma1.2p1_0489F.1_g164120 Hydrangea macrophylla HOM05D001065 ORTHO05D003103 3.5e-06 55.8 114 33.3
PSO675G0227 Papaver somniferum HOM05D001065 ORTHO05D003103 3.5e-06 55.8 134 27.6
Thecc.08G099700 Theobroma cacao HOM05D001065 ORTHO05D003103 3.5e-06 55.8 135 28.9
FAN05G2821 Fragaria x ananassa HOM05D021590 ORTHO05D207294 5.9e-06 55.1 30 83.3


User provided reference genes

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