Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2337 Fragaria x ananassa HOM05D003159 ORTHO05D003780 4.1e-72 274.6 141 100.0
FAN09G3766 Fragaria x ananassa HOM05D003159 ORTHO05D003780 3.5e-63 245.0 132 96.2
FAN14G5085 Fragaria x ananassa HOM05D003159 ORTHO05D003780 3.3e-61 238.4 142 88.7
FvH4_6g42830 Fragaria vesca HOM05D003159 ORTHO05D003780 6.7e-54 214.2 122 90.2
FAN05G1365 Fragaria x ananassa HOM05D003159 ORTHO05D003780 9.3e-48 193.7 119 86.6
RcHm_v2.0_Chr3g0450361 Rosa chinensis HOM05D003159 ORTHO05D003780 5.6e-45 184.5 141 75.9
Prupe.6G346800 Prunus persica HOM05D003159 ORTHO05D003780 3.5e-39 165.2 141 67.4
MD04G1227600 Malus domestica HOM05D003159 ORTHO05D003780 5.1e-38 161.4 141 65.2
MD12G1244300 Malus domestica HOM05D003159 ORTHO05D003780 1.1e-37 160.2 141 64.5
CANSAT54G0311 Cannabis sativa HOM05D003159 ORTHO05D003780 7.4e-37 157.5 141 63.8
Duzib128G1665 Durio zibethinus HOM05D003159 ORTHO05D003780 1.3e-36 156.8 141 64.5
Potri.013G043500 Populus trichocarpa HOM05D003159 ORTHO05D003780 1.3e-36 156.8 141 64.5
GSVIVG01036258001 Vitis vinifera HOM05D003159 ORTHO05D003780 1.3e-36 156.8 141 63.8
Cpa.g.sc162.4 Carica papaya HOM05D003159 ORTHO05D003780 2.1e-36 156.0 141 63.8
Manes.15G108700 Manihot esculenta HOM05D003159 ORTHO05D003780 2.8e-36 155.6 141 63.1
FAN08G2202 Fragaria x ananassa HOM05D003159 ORTHO05D003780 3.7e-36 155.2 141 65.2
FAN18G4088 Fragaria x ananassa HOM05D003159 ORTHO05D003780 3.7e-36 155.2 141 65.2
FvH4_5g12790 Fragaria vesca HOM05D003159 ORTHO05D003780 4.8e-36 154.8 141 65.2
FAN18G4090 Fragaria x ananassa HOM05D003159 ORTHO05D003780 4.8e-36 154.8 141 65.2
Gohir.A09G017500 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.1e-35 153.7 139 63.3
Gohir.D13G031700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.1e-35 153.7 139 63.3
Gorai.013G036100 Gossypium raimondii HOM05D003159 ORTHO05D003780 1.1e-35 153.7 139 63.3
Gorai.007G279300 Gossypium raimondii HOM05D003159 ORTHO05D003780 1.4e-35 153.3 139 62.6
QL01p030114 Quercus lobata HOM05D003159 ORTHO05D003780 2.4e-35 152.5 140 61.4
Thecc.05G277700 Theobroma cacao HOM05D003159 ORTHO05D003780 3.1e-35 152.1 139 62.6
Oeu054532.1 Olea europaea HOM05D003159 ORTHO05D003780 4.1e-35 151.8 139 61.9
Sabra19G0017400 Salix brachista HOM05D003159 ORTHO05D003780 4.1e-35 151.8 141 61.7
Peaxi162Scf00120g00723 Petunia axillaris HOM05D003159 ORTHO05D003780 5.3e-35 151.4 139 61.9
Potri.019G012300 Populus trichocarpa HOM05D003159 ORTHO05D003780 6.9e-35 151.0 141 61.7
CiPaw.08G119500 Carya illinoinensis HOM05D003159 ORTHO05D003780 9.0e-35 150.6 141 62.4
Eucgr.J00270 Eucalyptus grandis HOM05D003159 ORTHO05D003780 9.0e-35 150.6 141 61.7
Sabra19G0024900 Salix brachista HOM05D003159 ORTHO05D003780 1.2e-34 150.2 141 61.0
Nitab4.5_0001781g0080 Nicotiana tabacum HOM05D003159 ORTHO05D003780 2.0e-34 149.4 139 61.9
SalBow8G0718 Salvia bowleyana HOM05D003159 ORTHO05D003780 2.0e-34 149.4 139 61.9
Solyc11g006340.2 Solanum lycopersicum HOM05D003159 ORTHO05D003780 2.6e-34 149.1 139 61.2
Sopen11g002240 Solanum pennellii HOM05D003159 ORTHO05D003780 2.6e-34 149.1 139 61.2
Actinidia06777 Actinidia chinensis HOM05D003159 ORTHO05D003780 3.4e-34 148.7 139 61.9
CAN.G143.64 Capsicum annuum HOM05D003159 ORTHO05D003780 3.4e-34 148.7 139 61.2
Nn3g19572 Nelumbo nucifera HOM05D003159 ORTHO05D003780 3.4e-34 148.7 139 62.6
Gohir.D11G260700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 4.5e-34 148.3 139 61.2
HanXRQChr04g0112121 Helianthus annuus HOM05D003159 ORTHO05D003780 4.5e-34 148.3 139 61.2
vmacro19526 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 4.5e-34 148.3 139 63.3
vmacro20008 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 4.5e-34 148.3 139 63.3
COL.COLO4_15406 Corchorus olitorius HOM05D003159 ORTHO05D003780 5.9e-34 147.9 141 61.7
Migut.F01579 Erythranthe guttata HOM05D003159 ORTHO05D003780 5.9e-34 147.9 139 60.4
PGSC0003DMG400000995 Solanum tuberosum HOM05D003159 ORTHO05D003780 5.9e-34 147.9 139 61.2
SGA_v2.0_scaffold4G01959 Striga asiatica HOM05D003159 ORTHO05D003780 1.0e-33 147.1 139 61.2
HanXRQChr05g0152861 Helianthus annuus HOM05D003159 ORTHO05D003780 2.9e-33 145.6 139 61.2
TAR362G0530 Trochodendron aralioides HOM05D003159 ORTHO05D003780 2.9e-33 145.6 141 60.3
Sed0018461 Sechium edule HOM05D003159 ORTHO05D003780 8.5e-33 144.1 135 62.2
TPR.G26626 Trifolium pratense HOM05D003159 ORTHO05D003780 8.5e-33 144.1 139 59.0
TPR.G33936 Trifolium pratense HOM05D003159 ORTHO05D003780 8.5e-33 144.1 139 59.0
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 1.1e-32 143.7 139 60.4
PGR031G1742 Punica granatum HOM05D003159 ORTHO05D003780 1.1e-32 143.7 139 58.3
Ciclev10027983m.g Citrus clementina HOM05D003159 ORTHO05D003780 1.4e-32 143.3 139 60.4
Glyma.10G163700 Glycine max HOM05D003159 ORTHO05D003780 1.9e-32 142.9 139 59.7
CSS0035771 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 2.5e-32 142.5 131 64.1
DCAR_028953 Daucus carota HOM05D003159 ORTHO05D003780 2.5e-32 142.5 139 60.4
Phvul.007G188800 Phaseolus vulgaris HOM05D003159 ORTHO05D003780 2.5e-32 142.5 138 60.1
CsaV3_2G033180 Cucumis sativus L. HOM05D003159 ORTHO05D003780 3.2e-32 142.1 133 62.4
Rhsim01G0186900 Rhododendron simsii HOM05D003159 ORTHO05D003780 7.2e-32 141.0 147 59.9
MELO3C008089.2 Cucumis melo HOM05D003159 ORTHO05D003780 1.2e-31 140.2 133 61.7
Glyma.20G226300 Glycine max HOM05D003159 ORTHO05D003780 1.2e-31 140.2 139 59.0
MSTRG.927 Avicennia marina HOM05D003159 ORTHO05D003780 1.6e-31 139.8 138 58.7
Dinv05722 Davidia involucrata HOM05D003159 ORTHO05D003780 2.1e-31 139.4 131 62.6
Aqoxy4G01990 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 3.6e-31 138.7 139 56.8
AL4G34620 Arabidopsis lyrata HOM05D003159 ORTHO05D003780 3.6e-31 138.7 139 58.3
AUR62033998 Chenopodium quinoa HOM05D003159 ORTHO05D003780 3.6e-31 138.7 139 58.3
Sp4g20070 Schrenkiella parvula HOM05D003159 ORTHO05D003780 3.6e-31 138.7 139 56.8
BcaC01g05601 Brassica carinata HOM05D003159 ORTHO05D003780 4.6e-31 138.3 139 56.8
A03p20800 Brassica napus HOM05D003159 ORTHO05D003780 4.6e-31 138.3 139 56.8
BraA03t11320Z Brassica rapa HOM05D003159 ORTHO05D003780 4.6e-31 138.3 139 56.8
BcaB06g29020 Brassica carinata HOM05D003159 ORTHO05D003780 6.1e-31 137.9 139 56.8
THA.LOC104808027 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 6.1e-31 137.9 139 57.6
Carub.0004s1964 Capsella rubella HOM05D003159 ORTHO05D003780 7.9e-31 137.5 139 56.8
Ah.09g228380 Amaranthus hybridus HOM05D003159 ORTHO05D003780 1.0e-30 137.1 139 57.6
AT2G37690 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 1.0e-30 137.1 139 57.6
C03p24440 Brassica napus HOM05D003159 ORTHO05D003780 1.0e-30 137.1 139 56.1
Lj5g0023348 Lotus japonicus HOM05D003159 ORTHO05D003780 1.0e-30 137.1 138 58.0
arahy.Tifrunner.gnm1.ann1.N0IL4Q Arachis hypogaea HOM05D003159 ORTHO05D003780 1.3e-30 136.7 139 57.6
arahy.Tifrunner.gnm1.ann1.W48W00 Arachis hypogaea HOM05D003159 ORTHO05D003780 1.3e-30 136.7 139 57.6
BcaB01g03763 Brassica carinata HOM05D003159 ORTHO05D003780 1.3e-30 136.7 139 56.1
BcaC02g07498 Brassica carinata HOM05D003159 ORTHO05D003780 1.3e-30 136.7 139 56.1
A04p28880 Brassica napus HOM05D003159 ORTHO05D003780 1.3e-30 136.7 139 56.1
C04p66140 Brassica napus HOM05D003159 ORTHO05D003780 1.3e-30 136.7 139 56.1
BraA04t18362Z Brassica rapa HOM05D003159 ORTHO05D003780 1.3e-30 136.7 139 56.1
Cc02_g09140 Coffea canephora HOM05D003159 ORTHO05D003780 1.3e-30 136.7 139 59.0
Thhalv10016367m.g Eutrema salsugineum HOM05D003159 ORTHO05D003780 1.3e-30 136.7 139 56.8
Lsat_1_v5_gn_9_121981 Lactuca sativa HOM05D003159 ORTHO05D003780 1.3e-30 136.7 138 59.4
Aqoxy6G02795 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 1.8e-30 136.3 139 56.8
Aa31LG8G11740 Aethionema arabicum HOM05D003159 ORTHO05D003780 2.3e-30 136.0 139 57.6
Haze_04383 Corylus avellana HOM05D003159 ORTHO05D003780 2.3e-30 136.0 139 59.7
Medtr1g080500 Medicago truncatula HOM05D003159 ORTHO05D003780 3.0e-30 135.6 139 56.8
QL07p003261 Quercus lobata HOM05D003159 ORTHO05D003780 3.0e-30 135.6 140 57.9
Aa31sc70G90 Aethionema arabicum HOM05D003159 ORTHO05D003780 3.9e-30 135.2 139 56.8
BolC4t28117H Brassica oleracea HOM05D003159 ORTHO05D003780 3.9e-30 135.2 139 55.4
CARHR131850 Cardamine hirsuta HOM05D003159 ORTHO05D003780 3.9e-30 135.2 139 56.8
AT2G05140 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 5.1e-30 134.8 139 56.8
HPP92_021777 Vanilla planifolia HOM05D003159 ORTHO05D003780 1.1e-29 133.7 141 54.6
Sabra19G0025000 Salix brachista HOM05D003159 ORTHO05D003780 1.5e-29 133.3 141 58.2
Sc06g0010270 Simmondsia chinensis HOM05D003159 ORTHO05D003780 1.5e-29 133.3 139 58.3
TWI81G0941 Tripterygium wilfordii HOM05D003159 ORTHO05D003780 2.5e-29 132.5 136 57.4
Lalb_Chr06g0168161 Lupinus albus HOM05D003159 ORTHO05D003780 5.7e-29 131.3 139 56.1
Lalb_Chr21g0311061 Lupinus albus HOM05D003159 ORTHO05D003780 2.8e-28 129.0 139 56.1
ATR0111G007 Amborella trichopoda HOM05D003159 ORTHO05D003780 8.2e-28 127.5 136 56.6
Sabra19G0025200 Salix brachista HOM05D003159 ORTHO05D003780 8.2e-28 127.5 151 54.3
Sabra19G0025600 Salix brachista HOM05D003159 ORTHO05D003780 1.1e-27 127.1 151 54.3
MBI12_g21500_MAGBIO Magnolia biondii HOM05D003159 ORTHO05D003780 1.2e-26 123.6 139 51.8
DCAR_001864 Daucus carota HOM05D003159 ORTHO05D003780 4.5e-26 121.7 123 58.5
PSO675G5476 Papaver somniferum HOM05D003159 ORTHO05D003780 5.9e-26 121.3 139 52.5
EL10Ac8g19239 Beta vulgaris HOM05D003159 ORTHO05D003780 1.3e-25 120.2 165 46.1
Rhsim05G0176200 Rhododendron simsii HOM05D003159 ORTHO05D003780 1.3e-25 120.2 184 46.2
Sabra19G0025100 Salix brachista HOM05D003159 ORTHO05D003780 1.3e-25 120.2 130 57.7
Hund02191 Selenicereus undatus HOM05D003159 ORTHO05D003780 1.3e-25 120.2 129 55.0
BolC3t14843H Brassica oleracea HOM05D003159 ORTHO05D003780 1.7e-25 119.8 121 57.9
PSO541G5176 Papaver somniferum HOM05D003159 ORTHO05D003780 1.7e-25 119.8 139 51.8
unitig_22.g5684 Utricularia gibba HOM05D003159 ORTHO05D003780 6.5e-25 117.9 137 52.6
PSO170G0868 Papaver somniferum HOM05D003159 ORTHO05D003780 1.9e-24 116.3 139 49.6
PSO782G2231 Papaver somniferum HOM05D003159 ORTHO05D003780 3.2e-24 115.5 139 49.6
Sabra19G0025400 Salix brachista HOM05D003159 ORTHO05D003780 3.2e-24 115.5 114 59.6
Mapoly0046s0034 Marchantia polymorpha HOM05D003159 ORTHO05D003780 5.5e-24 114.8 138 49.3
Os01g0199900 Oryza sativa ssp. japonica HOM05D003159 ORTHO05D003780 1.2e-23 113.6 137 48.9
Zm00001eb120570 Zea mays HOM05D003159 ORTHO05D003780 2.7e-23 112.5 138 48.6
SMO270G0125 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 6.1e-23 111.3 137 45.3
Pp3c2_24240 Physcomitrium patens HOM05D003159 ORTHO05D003780 1.0e-22 110.5 138 47.8
Nitab4.5_0007901g0030 Nicotiana tabacum HOM05D003159 ORTHO05D003780 1.8e-22 109.8 149 50.3
CDE05G0407 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 3.0e-22 109.0 137 48.2
Sabra19G0025900 Salix brachista HOM05D003159 ORTHO05D003780 3.0e-22 109.0 114 58.8
VMungo0720G2291 Vigna mungo HOM05D003159 ORTHO05D003780 3.0e-22 109.0 110 60.0
Ca_10033_v3 Cicer arietinum L. HOM05D003159 ORTHO05D003780 3.9e-22 108.6 112 57.1
CDE11G0603 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 5.1e-22 108.2 138 49.3
QL03p028499 Quercus lobata HOM05D003159 ORTHO05D003780 3.3e-21 105.5 108 54.6
Lj3C918G0 Lonicera japonica HOM05D003159 ORTHO05D003780 4.4e-21 105.1 113 54.9
MCO10G267 Micromonas commoda HOM05D003159 ORTHO05D003780 5.7e-21 104.8 138 45.7
Psat6g145160 Pisum sativum HOM05D003159 ORTHO05D003780 1.3e-20 103.6 110 57.3
SHI06090 Sapria himalayana HOM05D003159 ORTHO05D003780 1.7e-20 103.2 130 50.0
Cfa025150 Carpinus fangiana HOM05D003159 ORTHO05D003780 1.8e-19 99.8 137 42.3
Cre12.g503300 Chlamydomonas reinhardtii HOM05D003159 ORTHO05D003780 2.4e-19 99.4 139 44.6
AUR62027480 Chenopodium quinoa HOM05D003159 ORTHO05D003780 5.3e-19 98.2 127 51.2
PSO170G3230 Papaver somniferum HOM05D003159 ORTHO05D003780 1.5e-18 96.7 139 45.3
PRCOL_00005277 Prasinoderma coloniale HOM05D003159 ORTHO05D003780 2.6e-18 95.9 141 45.4
SMO358G0312 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 3.4e-18 95.5 138 42.0
BcaB02g09259 Brassica carinata HOM05D003159 ORTHO05D003780 5.5e-16 88.2 106 49.1
Hma1.2p1_0345F.1_g131280 Hydrangea macrophylla HOM05D003159 ORTHO05D003780 7.2e-16 87.8 60 76.7
THA.LOC104799866 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 7.2e-16 87.8 83 59.0
arahy.Tifrunner.gnm1.ann1.H397QS Arachis hypogaea HOM05D003159 ORTHO05D003780 4.7e-15 85.1 60 75.0
TAR362G1104 Trochodendron aralioides HOM05D003159 ORTHO05D003468 2.3e-14 82.8 60 75.0
CBR_g8948 Chara braunii HOM05D003159 ORTHO05D003780 8.8e-14 80.9 111 45.0
Sed0012102 Sechium edule HOM05D003159 ORTHO05D003780 3.3e-13 79.0 135 44.4
Gorai.007G279200 Gossypium raimondii HOM05D003159 ORTHO05D003780 7.4e-13 77.8 62 62.9
Glyma.01G101050 Glycine max HOM05D003159 ORTHO05D003780 6.3e-12 74.7 58 70.7
SEGI_34284 Sequoiadendron giganteum HOM05D003159 ORTHO05D003780 8.2e-12 74.3 60 65.0
ClCG11G008930 Citrullus lanatus HOM05D003159 ORTHO05D003780 5.3e-11 71.6 119 47.9
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 5.3e-11 71.6 52 73.1
C09p45540 Brassica napus HOM05D003159 ORTHO05D003780 2.0e-10 69.7 133 36.8
TAR362G0177 Trochodendron aralioides HOM05D003159 ORTHO05D003780 3.5e-10 68.9 90 51.1
BcaC04g20281 Brassica carinata HOM05D003159 ORTHO05D003780 3.2e-08 62.4 88 40.9
Cc06_g22420 Coffea canephora HOM05D003159 ORTHO05D003780 4.2e-08 62.0 62 53.2
BolC9t57426H Brassica oleracea HOM05D003159 ORTHO05D003780 9.4e-08 60.8 88 40.9
GSVIVG01036259001 Vitis vinifera HOM05D003159 ORTHO05D003780 9.4e-08 60.8 104 45.2
Ciclev10021626m.g Citrus clementina HOM05D003159 ORTHO05D003780 4.7e-07 58.5 115 37.4


User provided reference genes

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