Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1821 Fragaria x ananassa HOM05D005899 ORTHO05D007445 2.2e-177 625.5 317 100.0
FvH4_6g03430 Fragaria vesca HOM05D005899 ORTHO05D007445 3.5e-159 565.1 305 92.5
FAN14G1139 Fragaria x ananassa HOM05D005899 ORTHO05D007445 3.0e-155 552.0 307 90.9
RcHm_v2.0_Chr3g0451931 Rosa chinensis HOM05D005899 ORTHO05D007445 1.2e-151 540.0 306 87.6
FAN05G2237 Fragaria x ananassa HOM05D005899 ORTHO05D007445 2.3e-147 525.8 305 88.5
Prupe.6G339900 Prunus persica HOM05D005899 ORTHO05D007445 5.7e-138 494.6 297 80.8
QL03p024530 Quercus lobata HOM05D005899 ORTHO05D007445 7.5e-138 494.2 307 77.5
CiPaw.07G006200 Carya illinoinensis HOM05D005899 ORTHO05D007445 1.8e-136 489.6 308 77.9
Cfa006459 Carpinus fangiana HOM05D005899 ORTHO05D007445 9.2e-136 487.3 308 77.9
MD12G1237200 Malus domestica HOM05D005899 ORTHO05D007445 1.0e-134 483.8 294 79.6
Ciclev10001942m.g Citrus clementina HOM05D005899 ORTHO05D007445 1.6e-132 476.5 297 79.1
Ciclev10001941m.g Citrus clementina HOM05D005899 ORTHO05D007445 6.1e-132 474.6 297 79.8
arahy.Tifrunner.gnm1.ann1.41KAT0 Arachis hypogaea HOM05D005899 ORTHO05D007445 1.0e-131 473.8 294 76.9
Duzib177G0382 Durio zibethinus HOM05D005899 ORTHO05D007445 1.7e-129 466.5 305 73.4
Thecc.05G288500 Theobroma cacao HOM05D005899 ORTHO05D007445 6.4e-129 464.5 292 75.3
Gorai.007G285000 Gossypium raimondii HOM05D005899 ORTHO05D007445 8.3e-129 464.2 294 73.5
Gohir.A11G255200 Gossypium hirsutum HOM05D005899 ORTHO05D007445 2.4e-128 462.6 294 73.5
Gohir.D11G264900 Gossypium hirsutum HOM05D005899 ORTHO05D007445 5.4e-128 461.5 294 73.5
Duzib128G1862 Durio zibethinus HOM05D005899 ORTHO05D007445 7.0e-128 461.1 305 72.8
Manes.09G155900 Manihot esculenta HOM05D005899 ORTHO05D007445 1.2e-127 460.3 300 74.3
Medtr7g114750 Medicago truncatula HOM05D005899 ORTHO05D007445 3.5e-127 458.8 293 74.1
CANSAT54G2589 Cannabis sativa HOM05D005899 ORTHO05D007445 1.3e-126 456.8 300 73.3
TPR.G6971 Trifolium pratense HOM05D005899 ORTHO05D007445 5.0e-126 454.9 289 75.1
VMungo0540G1799 Vigna mungo HOM05D005899 ORTHO05D007445 8.6e-126 454.1 291 75.3
Glyma.19G243000 Glycine max HOM05D005899 ORTHO05D007445 3.3e-125 452.2 291 74.2
Lalb_Chr15g0076871 Lupinus albus HOM05D005899 ORTHO05D007445 9.5e-125 450.7 308 71.1
Phvul.006G099800 Phaseolus vulgaris HOM05D005899 ORTHO05D007445 2.1e-124 449.5 291 74.2
Psat0s62g0080 Pisum sativum HOM05D005899 ORTHO05D007445 6.2e-124 448.0 290 72.8
PGR083G2155 Punica granatum HOM05D005899 ORTHO05D007445 1.8e-123 446.4 307 72.3
CSS0047717 Camellia sinensis var. sinensis HOM05D005899 ORTHO05D007445 3.1e-123 445.7 292 72.6
TWI56G0091 Tripterygium wilfordii HOM05D005899 ORTHO05D007445 5.2e-123 444.9 303 72.6
Ca_09408_v3 Cicer arietinum L. HOM05D005899 ORTHO05D007445 6.8e-123 444.5 292 74.3
Dinv11553 Davidia involucrata HOM05D005899 ORTHO05D007445 8.9e-123 444.1 295 71.9
Eucgr.L01763 Eucalyptus grandis HOM05D005899 ORTHO05D007445 2.6e-122 442.6 296 74.0
Potri.005G050600 Populus trichocarpa HOM05D005899 ORTHO05D007445 2.6e-122 442.6 302 71.5
Actinidia05763 Actinidia chinensis HOM05D005899 ORTHO05D007445 1.7e-121 439.9 304 69.4
Sabra15G0068500 Salix brachista HOM05D005899 ORTHO05D007445 1.7e-121 439.9 301 71.1
Lj1g0012490 Lotus japonicus HOM05D005899 ORTHO05D007445 3.7e-121 438.7 288 74.7
Sed0018425 Sechium edule HOM05D005899 ORTHO05D007445 3.7e-121 438.7 293 72.7
vmacro14199 Vaccinium macrocarpon HOM05D005899 ORTHO05D007445 2.4e-120 436.0 313 70.0
BraA05t22981Z Brassica rapa HOM05D005899 ORTHO05D007445 3.2e-120 435.6 300 70.7
DCAR_006615 Daucus carota HOM05D005899 ORTHO05D007445 3.2e-120 435.6 294 69.0
Rhsim07G0131800 Rhododendron simsii HOM05D005899 ORTHO05D007445 5.4e-120 434.9 318 69.2
Aa31LG5G15270 Aethionema arabicum HOM05D005899 ORTHO05D007445 7.0e-120 434.5 301 70.1
C05p62440 Brassica napus HOM05D005899 ORTHO05D007445 7.0e-120 434.5 300 70.0
TAR362G0589 Trochodendron aralioides HOM05D005899 ORTHO05D007445 7.0e-120 434.5 292 70.5
A05p42720 Brassica napus HOM05D005899 ORTHO05D007445 1.2e-119 433.7 300 70.3
Lj7P487T33 Lonicera japonica HOM05D005899 ORTHO05D007445 3.5e-119 432.2 292 70.9
FAN09G0887 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.0e-118 430.6 305 77.4
AT3G04880 Arabidopsis thaliana HOM05D005899 ORTHO05D007445 1.7e-118 429.9 300 70.0
CARHR079150 Cardamine hirsuta HOM05D005899 ORTHO05D007445 1.7e-118 429.9 301 70.8
QL03p024564 Quercus lobata HOM05D005899 ORTHO05D007445 2.3e-118 429.5 308 71.8
BolC5t34897H Brassica oleracea HOM05D005899 ORTHO05D007445 5.0e-118 428.3 300 69.3
Migut.N00303 Erythranthe guttata HOM05D005899 ORTHO05D007445 6.6e-118 427.9 306 68.6
BcaB03g11648 Brassica carinata HOM05D005899 ORTHO05D007445 3.3e-117 425.6 305 68.5
THA.LOC104802822 Tarenaya hassleriana HOM05D005899 ORTHO05D007445 5.6e-117 424.9 298 69.5
Oeu064565.1 Olea europaea HOM05D005899 ORTHO05D007445 2.1e-116 422.9 303 67.7
Cpa.g.sc117.66 Carica papaya HOM05D005899 ORTHO05D007445 4.7e-116 421.8 297 69.4
PGSC0003DMG400022509 Solanum tuberosum HOM05D005899 ORTHO05D007445 3.1e-115 419.1 292 68.5
PSO761G0524 Papaver somniferum HOM05D005899 ORTHO05D007445 4.0e-115 418.7 292 67.8
MBI01_g13083_MAGBIO Magnolia biondii HOM05D005899 ORTHO05D007445 1.5e-114 416.8 289 67.8
SGA_v2.0_scaffold517G52669 Striga asiatica HOM05D005899 ORTHO05D007445 2.0e-114 416.4 291 68.4
SHI18352 Sapria himalayana HOM05D005899 ORTHO05D007445 2.6e-114 416.0 314 66.9
Solyc01g097800.3 Solanum lycopersicum HOM05D005899 ORTHO05D007445 2.2e-113 412.9 292 67.8
Lsat_1_v5_gn_6_53000 Lactuca sativa HOM05D005899 ORTHO05D007445 6.4e-113 411.4 287 69.0
ATR0681G168 Amborella trichopoda HOM05D005899 ORTHO05D007445 1.9e-112 409.8 293 66.6
Sopen01g041400 Solanum pennellii HOM05D005899 ORTHO05D007445 9.2e-112 407.5 293 67.2
Nitab4.5_0002361g0040 Nicotiana tabacum HOM05D005899 ORTHO05D007445 1.0e-110 404.1 299 64.9
AUR62000983 Chenopodium quinoa HOM05D005899 ORTHO05D007445 1.3e-110 403.7 294 65.0
Cc02_g31760 Coffea canephora HOM05D005899 ORTHO05D007445 1.3e-110 403.7 297 65.7
Sp3g03700 Schrenkiella parvula HOM05D005899 ORTHO05D007445 1.3e-110 403.7 295 67.1
HPP92_023141 Vanilla planifolia HOM05D005899 ORTHO05D007445 3.9e-110 402.1 305 65.2
EL10Ac4g09173 Beta vulgaris HOM05D005899 ORTHO05D007445 5.1e-110 401.7 315 62.2
CDE05G2514 Ceratophyllum demersum HOM05D005899 ORTHO05D007445 5.1e-110 401.7 282 64.9
ECA233G4289 Erigeron canadensis HOM05D005899 ORTHO05D007445 1.1e-109 400.6 289 65.1
Oeu044665.1 Olea europaea HOM05D005899 ORTHO05D007445 1.1e-109 400.6 301 64.8
HanXRQChr02g0057281 Helianthus annuus HOM05D005899 ORTHO05D007445 1.2e-108 397.1 287 65.5
Cfa006460 Carpinus fangiana HOM05D005899 ORTHO05D007445 1.1e-107 394.0 287 69.3
Sc13g0006240 Simmondsia chinensis HOM05D005899 ORTHO05D007445 1.1e-104 384.0 293 63.8
SEGI_33796 Sequoiadendron giganteum HOM05D005899 ORTHO05D007445 1.7e-102 376.7 289 60.9
Os01g0542000 Oryza sativa ssp. japonica HOM05D005899 ORTHO05D007445 1.5e-98 363.6 301 60.5
Sabra15G0041400 Salix brachista HOM05D005899 ORTHO05D007445 2.6e-98 362.8 318 60.4
Zm00001eb162780 Zea mays HOM05D005899 ORTHO05D007445 1.7e-97 360.1 298 59.1
TPR.G8897 Trifolium pratense HOM05D005899 ORTHO05D007445 2.2e-97 359.8 250 68.8
CAN.G134.162 Capsicum annuum HOM05D005899 ORTHO05D007445 3.2e-96 355.9 294 60.9
Atru.chr2.732 Acer truncatum HOM05D005899 ORTHO05D007445 4.2e-96 355.5 245 73.5
Atru.chr2.745 Acer truncatum HOM05D005899 ORTHO05D007445 7.1e-96 354.8 243 74.1
Nn4g26305 Nelumbo nucifera HOM05D005899 ORTHO05D007445 2.7e-95 352.8 236 71.2
SMO367G0143 Selaginella moellendorffii HOM05D005899 ORTHO05D007445 8.1e-92 341.3 296 55.7
AL3G15170 Arabidopsis lyrata HOM05D005899 ORTHO05D007445 1.2e-90 337.4 226 69.5
Haze_04330 Corylus avellana HOM05D005899 ORTHO05D007445 2.1e-87 326.6 268 63.1
Atru.chr2.742 Acer truncatum HOM05D005899 ORTHO05D007445 2.8e-84 316.2 241 69.3
Pp3c6_4500 Physcomitrium patens HOM05D005899 ORTHO05D007445 5.5e-80 302.0 413 39.7
Eucgr.B01712 Eucalyptus grandis HOM05D005899 ORTHO05D007445 6.9e-75 285.0 308 53.9
Eucgr.L02186 Eucalyptus grandis HOM05D005899 ORTHO05D007445 2.6e-74 283.1 295 50.8
Eucgr.L02099 Eucalyptus grandis HOM05D005899 ORTHO05D007445 3.8e-73 279.3 198 68.7
Peaxi162Scf00404g00009 Petunia axillaris HOM05D005899 ORTHO05D007445 1.4e-72 277.3 259 54.1
Actinidia36917 Actinidia chinensis HOM05D005899 ORTHO05D007445 4.2e-72 275.8 211 65.4
Nitab4.5_0013433g0050 Nicotiana tabacum HOM05D005899 ORTHO05D007445 2.9e-65 253.1 188 60.1
Eucgr.B01710 Eucalyptus grandis HOM05D005899 ORTHO05D007445 2.5e-64 250.0 306 49.3
unitig_744.g24569 Utricularia gibba HOM05D005899 ORTHO05D007445 4.8e-60 235.7 184 65.2
Ah.04g162380 Amaranthus hybridus HOM05D005899 ORTHO05D007445 2.2e-57 226.9 162 60.5
BcaNung06538 Brassica carinata HOM05D005899 ORTHO05D007445 5.0e-57 225.7 164 68.9
Medtr8g098320 Medicago truncatula HOM05D005899 ORTHO05D007445 1.4e-56 224.2 161 70.2
AUR62004985 Chenopodium quinoa HOM05D005899 ORTHO05D007445 7.2e-56 221.9 246 48.8
FAN05G4109 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.5e-53 214.2 163 74.8
Carub.0003s0407 Capsella rubella HOM05D005899 ORTHO05D007445 2.2e-52 210.3 123 74.8
Medtr7g114730 Medicago truncatula HOM05D005899 ORTHO05D007445 8.2e-52 208.4 207 54.6
Sabra15G0057000 Salix brachista HOM05D005899 ORTHO05D007445 1.8e-51 207.2 143 67.1
Sabra15G0068600 Salix brachista HOM05D005899 ORTHO05D007445 1.8e-51 207.2 143 67.1
FAN05G4786 Fragaria x ananassa HOM05D005899 ORTHO05D007445 3.1e-51 206.5 99 96.0
AUR62004976 Chenopodium quinoa HOM05D005899 ORTHO05D007445 5.3e-51 205.7 164 62.8
Sabra15G0056900 Salix brachista HOM05D005899 ORTHO05D007445 5.3e-51 205.7 123 73.2
Dinv12477 Davidia involucrata HOM05D005899 ORTHO05D007445 2.6e-50 203.4 136 66.9
TPR.G21843 Trifolium pratense HOM05D005899 ORTHO05D007445 5.0e-41 172.6 117 76.9
Cfa006462 Carpinus fangiana HOM05D005899 ORTHO05D007445 1.9e-40 170.6 128 62.5
SGA_v2.0_scaffold31G12627 Striga asiatica HOM05D005899 ORTHO05D007445 3.2e-40 169.9 124 60.5
RcHm_v2.0_Chr7g0217791 Rosa chinensis HOM05D005899 ORTHO05D007445 5.9e-34 149.1 140 60.0
Carub.0003s0408 Capsella rubella HOM05D005899 ORTHO05D007445 1.9e-32 144.1 104 73.1
AUR62000980 Chenopodium quinoa HOM05D005899 ORTHO05D007445 5.5e-24 115.9 90 64.4
TAR140G0002 Trochodendron aralioides HOM05D005899 ORTHO05D007445 8.8e-22 108.6 102 52.9
TAR623G1042 Trochodendron aralioides HOM05D005899 ORTHO05D007445 8.8e-22 108.6 102 52.9
TAR636G1090 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.2e-21 108.2 102 51.0
TAR375G0990 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.0e-21 107.5 103 52.4
PRCOL_00001982 Prasinoderma coloniale HOM05D005899 ORTHO05D007445 1.7e-20 104.4 175 38.3
TAR625G0400 Trochodendron aralioides HOM05D005899 ORTHO05D007445 9.5e-16 88.6 87 49.4
unitig_21.g20175 Utricularia gibba HOM05D005899 ORTHO05D007445 8.0e-15 85.5 74 55.4
FvH4_7g17710 Fragaria vesca HOM05D005899 ORTHO05D045384 2.0e-10 70.9 56 64.3
FAN06G4129 Fragaria x ananassa HOM05D005899 ORTHO05D045384 2.0e-10 70.9 67 56.7
TAR375G0306 Trochodendron aralioides HOM05D005899 ORTHO05D007445 5.0e-09 66.2 56 60.7
FAN19G2556 Fragaria x ananassa HOM05D010020 ORTHO05D015123 2.1e-07 60.8 157 35.0
FvH4_1g21970 Fragaria vesca HOM05D010020 ORTHO05D015123 1.1e-06 58.5 96 43.8
TAR365G0745 Trochodendron aralioides HOM05D005899 ORTHO05D007445 8.9e-06 55.5 54 44.4


User provided reference genes

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