Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 2362.8 1181 100.0
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 0.0e+00 2187.1 1168 94.8
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 2123.6 1288 85.8
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 2061.2 1177 89.0
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1934.8 1091 89.7
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 0.0e+00 1774.2 1093 81.7
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1722.2 910 96.0
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1713.0 1106 78.5
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1710.3 1108 78.4
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1704.5 949 92.0
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 0.0e+00 1573.5 1116 72.0
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 0.0e+00 1566.2 1112 71.2
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 0.0e+00 1534.2 1096 71.4
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 0.0e+00 1528.5 1092 69.4
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 0.0e+00 1527.7 1095 70.8
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 0.0e+00 1527.7 1127 69.8
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 0.0e+00 1518.1 1094 70.5
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1514.6 1096 70.3
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 0.0e+00 1494.2 1106 67.7
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 0.0e+00 1493.0 1106 68.1
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1482.6 1117 67.7
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1476.1 1097 68.4
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 0.0e+00 1452.2 1071 68.7
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 0.0e+00 1447.6 1092 66.9
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 0.0e+00 1447.2 1114 66.2
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1445.3 1112 66.6
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1439.1 1091 67.8
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1437.6 1111 66.7
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1432.2 1094 67.2
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1431.8 1093 66.6
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1430.6 1095 67.2
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1426.0 1109 66.0
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 0.0e+00 1424.5 1040 70.3
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 0.0e+00 1420.2 1093 66.4
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 0.0e+00 1418.7 1175 63.4
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1413.7 1108 65.7
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 0.0e+00 1410.2 1109 64.9
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1410.2 1128 64.6
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 0.0e+00 1404.8 1114 64.5
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 0.0e+00 1404.4 1107 65.6
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 0.0e+00 1403.3 1096 65.5
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 0.0e+00 1403.3 1096 65.4
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1402.5 1093 65.7
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 0.0e+00 1398.6 1104 64.9
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 0.0e+00 1397.5 1096 65.1
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 0.0e+00 1397.1 1086 64.7
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1396.7 1080 65.5
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 0.0e+00 1393.6 1155 61.9
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 0.0e+00 1391.7 1097 64.4
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1390.9 1107 64.9
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1390.6 1094 65.5
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1387.1 1104 64.4
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1384.0 1095 66.1
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 0.0e+00 1380.5 986 70.8
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 0.0e+00 1379.8 1092 63.8
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 0.0e+00 1364.7 1098 62.5
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 0.0e+00 1352.4 1099 61.9
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 0.0e+00 1352.0 1112 64.1
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 0.0e+00 1339.7 1106 62.7
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 0.0e+00 1338.2 1106 62.6
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 0.0e+00 1335.1 1089 62.2
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 0.0e+00 1329.3 1111 61.9
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1323.5 1100 61.8
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 0.0e+00 1322.0 1094 61.5
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1315.1 1113 61.0
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1313.1 1100 61.7
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 0.0e+00 1310.4 1120 58.8
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 0.0e+00 1309.7 1098 61.9
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 0.0e+00 1309.7 1092 60.9
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 0.0e+00 1308.5 1100 60.9
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1307.4 1093 60.9
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 0.0e+00 1307.4 1088 61.1
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1306.6 1104 61.1
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1306.2 1093 60.9
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1305.4 1094 60.9
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1302.7 1093 60.8
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1300.0 1096 60.6
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 0.0e+00 1299.6 1094 59.4
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1297.7 1112 59.6
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 0.0e+00 1297.0 1113 59.8
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1294.3 1093 60.4
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1293.5 1089 60.4
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 0.0e+00 1284.6 1097 60.4
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1282.3 1090 62.2
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1262.7 1114 57.6
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 0.0e+00 1262.7 1114 58.6
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 0.0e+00 1261.5 1090 60.1
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1253.4 1093 59.5
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1238.8 1098 59.9
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 0.0e+00 1225.7 1218 56.1
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1221.1 1095 58.1
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 0.0e+00 1187.2 1119 55.5
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 0.0e+00 1181.4 1022 60.0
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1170.6 1088 55.4
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 0.0e+00 1162.1 1087 55.2
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 0.0e+00 1156.4 1129 54.4
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 0.0e+00 1153.7 1096 53.9
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1136.3 870 67.1
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 0.0e+00 1131.3 1002 59.9
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 0.0e+00 1124.0 1078 54.7
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 0.0e+00 1084.3 1108 52.3
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.5e-300 1036.6 1118 50.7
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 3.4e-276 955.7 852 58.7
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 7.3e-263 911.4 648 68.7
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 2.4e-253 879.8 1114 43.7
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 1.1e-250 870.9 1124 43.2
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 2.6e-244 849.7 1118 43.7
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.2e-236 824.3 658 65.0
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 6.7e-224 781.9 749 55.7
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 1.3e-203 714.5 924 44.7
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 3.7e-158 563.5 379 74.9
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 2.1e-148 531.2 505 59.0
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 1.8e-144 518.1 1103 33.1
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 9.0e-144 515.8 349 73.6
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 2.4e-125 454.5 320 70.3
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 3.7e-121 440.7 366 61.7
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 1.9e-114 418.3 472 51.1
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 1.8e-99 368.6 222 77.0
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 2.6e-95 354.8 1081 26.7
Gohir.A04G054750 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.2e-92 345.9 214 78.0
Gohir.D04G091900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.4e-91 342.4 209 78.5
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 4.8e-89 334.0 478 42.3
Lj1C1055T8 Lonicera japonica HOM05D004363 ORTHO05D005110 6.5e-86 323.6 209 74.2
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 8.2e-81 306.6 261 62.8
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 2.9e-78 298.1 1046 25.4
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.2e-71 276.2 296 50.3
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 3.4e-66 258.1 163 69.9
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 3.6e-60 238.0 144 70.8
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.4e-59 236.1 189 57.1
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 5.6e-53 214.2 988 23.5
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 3.4e-50 204.9 167 61.7
Actinidia03879 Actinidia chinensis HOM05D004363 ORTHO05D005110 2.5e-45 188.7 143 65.7
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 1.2e-39 169.9 477 27.9
Actinidia03986 Actinidia chinensis HOM05D004363 ORTHO05D005110 4.7e-36 157.9 111 64.9
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.1e-35 156.8 208 41.3
C09p60760 Brassica napus HOM05D004363 ORTHO05D005110 1.8e-35 156.0 119 66.4
CSS0037163 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 5.2e-35 154.5 110 68.2
SEGI_10491 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 9.9e-34 150.2 122 52.5
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.1e-32 146.7 114 71.1
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 4.2e-32 144.8 209 38.8
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 6.0e-31 141.0 112 74.1
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 2.4e-27 129.0 388 27.6
Ah.07g203630 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.3e-22 113.2 209 33.5
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 3.9e-22 111.7 94 59.6
SEGI_19509 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.9e-21 109.4 86 61.6
SHI08951 Sapria himalayana HOM05D004363 ORTHO05D005110 8.1e-20 104.0 83 62.7
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 9.0e-19 100.5 75 58.7
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 1.5e-13 83.2 57 61.4
SHI08954 Sapria himalayana HOM05D004363 ORTHO05D005110 1.5e-13 83.2 65 53.8
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 1.6e-12 79.7 93 51.6
Lsat_1_v5_gn_8_81001 Lactuca sativa HOM05D004363 ORTHO05D005110 1.2e-10 73.6 85 47.1
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 1.5e-10 73.2 93 45.2
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 5.8e-10 71.2 110 40.0
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 3.2e-08 65.5 49 65.3
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 9.3e-08 63.9 76 59.2
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 1.6e-07 63.2 41 65.9
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 6.0e-07 61.2 58 70.7
Lalb_Chr02g0153261 Lupinus albus HOM05D004363 ORTHO05D005110 2.3e-06 59.3 58 53.4


User provided reference genes

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