Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.5e-95 352.8 177 100.0
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 1.3e-94 349.7 177 99.4
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.3e-94 349.7 177 99.4
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.4e-93 345.5 177 98.3
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 1.4e-85 319.7 177 90.4
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 7.0e-77 290.8 177 83.6
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 7.0e-77 290.8 173 85.0
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 9.2e-77 290.4 177 83.6
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 7.8e-76 287.3 174 81.6
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 1.7e-75 286.2 173 83.2
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 1.7e-75 286.2 173 83.2
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 2.3e-75 285.8 174 81.0
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 2.3e-75 285.8 173 82.1
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 2.3e-75 285.8 174 83.3
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 3.9e-75 285.0 174 82.8
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 8.6e-75 283.9 175 84.0
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 1.1e-74 283.5 177 81.9
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.5e-74 283.1 177 82.5
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 7.3e-74 280.8 177 81.9
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.6e-73 279.6 173 80.9
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 1.6e-73 279.6 177 81.4
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 3.6e-73 278.5 173 83.8
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 6.1e-73 277.7 177 81.4
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 6.1e-73 277.7 175 81.1
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.4e-72 276.6 173 79.8
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 2.3e-72 275.8 170 81.2
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 6.8e-72 274.2 171 80.1
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 1.2e-71 273.5 166 81.9
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 1.5e-71 273.1 175 79.4
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 2.0e-71 272.7 177 78.5
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 2.0e-71 272.7 174 79.9
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 2.6e-71 272.3 177 78.5
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 3.4e-71 271.9 177 78.0
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 4.4e-71 271.6 175 79.4
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 5.8e-71 271.2 175 78.9
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 5.8e-71 271.2 175 79.4
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 7.5e-71 270.8 173 80.3
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 9.8e-71 270.4 173 79.8
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 9.8e-71 270.4 173 79.8
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 2.2e-70 269.2 175 78.9
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 4.9e-70 268.1 176 77.8
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 4.9e-70 268.1 173 77.5
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 6.4e-70 267.7 175 80.6
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 1.1e-69 266.9 180 75.6
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 1.4e-69 266.5 172 79.7
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 1.9e-69 266.2 172 80.2
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 1.9e-69 266.2 175 78.9
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 1.9e-69 266.2 175 78.9
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 2.4e-69 265.8 177 75.7
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 2.4e-69 265.8 177 75.7
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 2.4e-69 265.8 173 79.2
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 2.4e-69 265.8 171 80.7
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 3.2e-69 265.4 170 80.6
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 3.2e-69 265.4 172 75.6
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 4.1e-69 265.0 177 75.1
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 5.4e-69 264.6 180 75.0
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 5.4e-69 264.6 177 75.1
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 5.4e-69 264.6 177 75.1
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 7.0e-69 264.2 172 79.1
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 7.0e-69 264.2 172 79.1
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 9.2e-69 263.8 173 76.9
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.6e-68 263.1 174 77.0
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 1.6e-68 263.1 175 77.7
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 2.0e-68 262.7 176 75.6
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 4.6e-68 261.5 171 78.9
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 4.6e-68 261.5 173 78.0
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 6.0e-68 261.2 170 79.4
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 7.8e-68 260.8 172 79.1
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 1.3e-67 260.0 163 80.4
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 1.7e-67 259.6 171 75.4
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.7e-67 259.6 170 78.2
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 2.3e-67 259.2 180 74.4
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 3.0e-67 258.8 173 79.2
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 3.0e-67 258.8 171 78.4
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 3.9e-67 258.5 172 76.7
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 5.0e-67 258.1 175 76.0
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 1.1e-66 256.9 178 76.4
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 1.1e-66 256.9 178 76.4
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.5e-66 256.5 170 77.6
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 4.3e-66 255.0 168 75.6
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 5.6e-66 254.6 171 75.4
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 5.6e-66 254.6 174 76.4
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 5.6e-66 254.6 171 76.0
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 1.2e-65 253.4 169 76.9
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 3.6e-65 251.9 182 73.1
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 1.1e-64 250.4 172 76.2
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 1.1e-64 250.4 172 76.2
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 1.8e-64 249.6 177 74.0
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 1.8e-64 249.6 183 70.5
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 2.3e-64 249.2 171 74.9
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.3e-64 249.2 171 74.9
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 2.3e-64 249.2 177 74.0
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 3.1e-64 248.8 180 71.7
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 4.0e-64 248.4 172 72.7
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 5.2e-64 248.1 180 70.6
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 6.8e-64 247.7 171 73.1
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 2.0e-63 246.1 179 70.4
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 2.6e-63 245.7 181 71.8
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 4.4e-63 245.0 174 70.7
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 4.4e-63 245.0 180 71.7
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 4.4e-63 245.0 178 73.0
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 1.3e-62 243.4 180 72.2
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 2.9e-62 242.3 171 73.7
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 1.4e-61 240.0 177 71.8
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 3.2e-61 238.8 181 70.2
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 3.2e-61 238.8 181 70.7
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 4.1e-61 238.4 171 72.5
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 7.1e-61 237.7 181 69.1
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 1.2e-60 236.9 181 70.2
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 1.6e-60 236.5 170 72.4
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 2.7e-60 235.7 170 70.6
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 4.6e-60 235.0 173 68.8
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 6.0e-60 234.6 169 71.6
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 7.8e-60 234.2 168 70.8
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 1.0e-59 233.8 178 71.3
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 1.7e-59 233.0 171 71.3
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 2.3e-59 232.6 151 76.8
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 8.6e-59 230.7 170 70.0
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 7.3e-58 227.6 153 76.5
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.8e-57 225.7 169 68.6
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.8e-57 225.7 169 68.6
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 4.7e-57 224.9 246 53.7
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 5.2e-56 221.5 171 65.5
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 2.6e-55 219.2 171 66.1
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 5.8e-55 218.0 171 66.1
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 9.9e-55 217.2 173 65.3
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 2.2e-54 216.1 151 74.2
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 8.3e-54 214.2 177 66.7
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 3.2e-53 212.2 186 65.6
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 7.1e-53 211.1 157 72.6
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 2.8e-49 199.1 121 79.3
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 3.4e-47 192.2 175 57.1
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 4.4e-47 191.8 143 62.9
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 2.9e-46 189.1 176 61.4
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 3.8e-46 188.7 173 57.8
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 1.6e-44 183.3 147 66.0
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 3.0e-43 179.1 149 59.1
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 1.1e-42 177.2 185 56.8
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 9.6e-42 174.1 176 55.1
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.1e-37 160.6 89 85.4
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.3e-35 152.9 86 84.9
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.9e-34 149.8 82 85.4
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.5e-34 149.4 179 49.7
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.5e-34 149.4 84 90.5
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 1.1e-32 144.1 89 80.9
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 2.0e-31 139.8 176 46.0
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 1.7e-30 136.7 111 66.7
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 2.2e-30 136.3 112 66.1
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 2.9e-30 136.0 123 60.2
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.9e-29 133.3 130 56.9
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 9.3e-29 131.0 146 54.1
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 8.1e-25 117.9 124 50.0
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 1.8e-24 116.7 90 73.3
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 1.7e-22 110.2 118 44.9
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 5.5e-21 105.1 108 57.4
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 5.5e-21 105.1 108 57.4
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 1.6e-20 103.6 108 44.4
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 1.3e-17 94.0 139 36.7
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.0e-14 84.3 46 84.8
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 9.3e-13 77.8 79 54.4
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 1.6e-12 77.0 65 63.1
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 1.6e-12 77.0 95 40.0
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 3.3e-10 69.3 86 47.7
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 6.3e-09 65.1 79 51.9
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 4.1e-08 62.4 192 32.8
MBI13_g11352_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 4.5e-07 58.9 52 57.7
Cc01_g11080 Coffea canephora HOM05D004222 ORTHO05D154025 2.9e-06 56.2 110 38.2


User provided reference genes

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