Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.3e-108 396.4 190 100.0
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 9.8e-93 343.6 174 95.4
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 9.8e-93 343.6 174 95.4
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 1.3e-92 343.2 174 95.4
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.2e-92 342.4 174 94.8
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 2.2e-92 342.4 174 94.8
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 6.3e-92 340.9 174 94.3
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 1.5e-88 329.7 170 92.9
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 2.5e-88 328.9 174 90.2
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 2.1e-87 325.9 174 89.7
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 2.8e-87 325.5 174 89.1
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 2.3e-86 322.4 174 88.5
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 3.1e-86 322.0 174 86.8
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 3.1e-86 322.0 174 86.8
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 1.2e-85 320.1 174 86.8
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 1.2e-85 320.1 174 87.9
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 1.5e-85 319.7 174 87.9
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 1.3e-84 316.6 174 84.5
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 1.3e-84 316.6 173 86.7
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 4.9e-84 314.7 174 84.5
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 1.1e-83 313.5 174 86.2
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 1.1e-83 313.5 174 84.5
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 3.2e-83 312.0 174 84.5
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 5.4e-83 311.2 174 84.5
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 9.2e-83 310.5 172 83.1
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 1.2e-82 310.1 174 83.9
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 1.2e-82 310.1 174 84.5
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 1.2e-82 310.1 174 83.3
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.6e-82 309.7 174 82.8
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 1.6e-82 309.7 174 83.3
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 1.6e-82 309.7 172 83.1
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 1.6e-82 309.7 174 84.5
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 2.7e-82 308.9 174 84.5
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 4.6e-82 308.1 172 82.6
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 6.0e-82 307.8 174 83.3
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 6.0e-82 307.8 172 81.4
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 6.0e-82 307.8 172 81.4
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 7.8e-82 307.4 174 84.5
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 7.8e-82 307.4 174 84.5
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 7.8e-82 307.4 174 82.2
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 7.8e-82 307.4 174 83.3
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 1.3e-81 306.6 174 82.2
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 1.3e-81 306.6 174 83.3
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.7e-81 306.2 174 84.5
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 2.3e-81 305.8 174 82.8
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 2.3e-81 305.8 174 82.8
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 2.3e-81 305.8 174 82.8
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 2.3e-81 305.8 174 81.6
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 2.3e-81 305.8 174 81.6
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 3.0e-81 305.4 174 83.3
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 3.9e-81 305.1 174 82.8
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 3.9e-81 305.1 174 82.8
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 3.9e-81 305.1 174 82.8
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 5.0e-81 304.7 174 82.8
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 5.0e-81 304.7 172 80.8
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 8.6e-81 303.9 174 82.2
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 8.6e-81 303.9 174 82.2
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 8.6e-81 303.9 174 82.8
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 1.1e-80 303.5 174 82.2
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 1.1e-80 303.5 174 82.2
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 1.1e-80 303.5 174 82.2
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 1.1e-80 303.5 174 82.2
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 1.9e-80 302.8 174 82.2
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 1.9e-80 302.8 174 82.2
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 3.3e-80 302.0 169 82.2
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 4.3e-80 301.6 174 81.6
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 4.3e-80 301.6 176 82.4
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 4.3e-80 301.6 176 82.4
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 4.3e-80 301.6 174 81.6
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 4.3e-80 301.6 174 81.6
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 5.6e-80 301.2 174 80.5
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 7.3e-80 300.8 174 80.5
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 7.3e-80 300.8 174 81.6
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 1.6e-79 299.7 174 81.6
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 1.6e-79 299.7 174 81.0
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 1.6e-79 299.7 174 81.0
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 1.6e-79 299.7 174 81.0
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 2.1e-79 299.3 174 81.0
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 2.1e-79 299.3 174 80.5
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 2.1e-79 299.3 174 80.5
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 2.8e-79 298.9 174 79.9
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 4.7e-79 298.1 174 83.3
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 1.1e-78 297.0 174 80.5
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 1.1e-78 297.0 174 80.5
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 1.1e-78 297.0 174 82.2
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 1.1e-78 297.0 174 79.9
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 1.1e-78 297.0 174 81.6
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 2.3e-78 295.8 174 80.5
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 3.1e-78 295.4 174 80.5
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 1.2e-77 293.5 174 79.9
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 2.0e-77 292.7 174 80.5
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 2.6e-77 292.4 166 82.5
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 4.4e-77 291.6 174 79.3
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.3e-76 290.0 174 79.9
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 3.7e-76 288.5 174 79.9
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 4.9e-76 288.1 174 79.9
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 8.3e-76 287.3 174 77.0
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.1e-75 287.0 174 78.2
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.4e-75 286.6 174 77.6
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 1.4e-75 286.6 174 78.7
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 1.4e-75 286.6 174 78.7
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 1.4e-75 286.6 174 78.7
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 2.4e-75 285.8 174 78.2
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 3.2e-75 285.4 174 77.6
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 9.2e-75 283.9 174 78.2
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 2.7e-74 282.3 180 76.1
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 7.8e-74 280.8 174 78.7
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 7.8e-74 280.8 174 76.4
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 1.3e-73 280.0 174 77.0
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 1.7e-73 279.6 174 75.9
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 2.3e-73 279.3 174 75.3
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 3.0e-73 278.9 175 76.6
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 5.1e-73 278.1 166 77.7
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 5.1e-73 278.1 174 75.3
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 1.2e-71 273.5 174 74.1
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 1.1e-70 270.4 175 75.4
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 6.8e-70 267.7 174 74.1
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 6.8e-70 267.7 175 74.9
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 1.5e-69 266.5 174 74.7
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 1.5e-69 266.5 175 74.3
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 7.6e-69 264.2 175 73.7
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 1.3e-68 263.5 174 73.0
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 4.9e-68 261.5 174 70.7
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 1.1e-67 260.4 176 71.6
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 1.1e-67 260.4 174 73.0
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 3.2e-67 258.8 176 71.0
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 7.1e-67 257.7 175 73.1
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 8.6e-65 250.8 174 73.0
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 1.9e-64 249.6 174 67.2
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 3.6e-63 245.4 174 71.3
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 1.4e-62 243.4 174 69.5
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 3.1e-62 242.3 174 62.1
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 4.0e-62 241.9 165 70.3
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 6.8e-62 241.1 174 66.1
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 1.2e-61 240.4 163 71.8
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 2.0e-61 239.6 165 69.1
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 4.4e-61 238.4 174 69.5
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 1.3e-60 236.9 175 64.0
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 2.9e-60 235.7 174 63.8
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 2.9e-60 235.7 174 63.8
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 1.9e-59 233.0 173 63.6
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 1.6e-58 229.9 173 62.4
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 3.3e-56 222.2 173 60.1
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 3.6e-55 218.8 174 60.3
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 1.1e-54 217.2 151 74.2
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 1.4e-51 206.8 174 55.7
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.3e-49 199.5 173 64.2
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 6.2e-47 191.4 174 59.2
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 7.1e-43 177.9 109 77.1
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 3.5e-42 175.6 122 74.6
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 1.3e-41 173.7 115 71.3
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 1.1e-40 170.6 107 74.8
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 1.9e-40 169.9 173 48.0
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.5e-37 160.2 174 53.4
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.0e-36 157.5 85 87.1
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 3.2e-35 152.5 123 59.3
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 1.5e-29 133.7 78 82.1
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 1.9e-24 116.7 88 68.2
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 1.4e-17 94.0 50 82.0
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 3.0e-09 66.2 35 88.6


User provided reference genes

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