Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 0.0e+00 1761.5 928 100.0
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 0.0e+00 1682.2 930 96.1
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 0.0e+00 1679.8 930 96.0
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 0.0e+00 1676.8 920 96.4
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 0.0e+00 1652.9 920 95.5
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 0.0e+00 1451.4 937 85.0
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 0.0e+00 1350.5 922 81.1
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 0.0e+00 1186.0 949 70.6
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 0.0e+00 1175.6 949 71.7
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 0.0e+00 1166.8 947 70.0
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 4.7e-289 998.0 946 61.4
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 4.8e-286 988.0 947 61.9
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 3.2e-282 975.3 949 62.5
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 2.3e-280 969.1 1014 58.0
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 1.0e-275 953.7 949 59.5
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 4.4e-271 938.3 949 58.6
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 2.8e-270 935.6 948 59.8
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 7.0e-269 931.0 950 58.5
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.9e-267 925.6 950 58.4
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.3e-266 921.8 950 58.1
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 2.1e-265 919.5 961 58.5
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.6e-265 918.7 947 58.2
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.8e-264 916.4 956 56.6
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 1.2e-263 913.7 947 57.9
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.4e-263 911.8 954 56.8
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 5.8e-263 911.4 954 59.0
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.0e-260 902.9 954 56.7
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 4.3e-258 895.2 948 57.3
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 7.5e-255 884.4 915 57.0
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 1.3e-254 883.6 932 56.8
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.2e-249 867.1 938 56.5
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 6.2e-249 864.8 927 55.7
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.2e-246 856.3 938 56.0
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 2.9e-246 855.9 1001 52.7
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 4.6e-244 848.6 956 53.6
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 1.3e-243 847.0 945 55.1
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 1.6e-241 840.1 949 55.5
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 4.0e-240 835.5 944 54.2
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 1.5e-239 833.6 953 54.6
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 1.4e-237 827.0 948 55.0
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 3.2e-237 825.9 952 53.4
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 3.3e-234 815.8 945 53.2
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 6.9e-232 808.1 955 52.5
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 2.9e-230 802.7 940 53.8
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.1e-226 790.8 875 53.4
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.5e-226 790.4 957 51.5
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 3.3e-226 789.3 944 53.9
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 8.1e-225 784.6 950 51.1
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.6e-223 779.6 921 51.2
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 3.8e-222 775.8 981 52.0
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 8.4e-222 774.6 921 50.8
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 1.9e-221 773.5 931 52.0
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 9.3e-221 771.2 963 50.8
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 2.1e-220 770.0 923 52.7
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 3.9e-219 765.8 926 51.1
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 2.5e-218 763.1 926 51.4
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 6.2e-217 758.4 676 63.5
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 6.2e-217 758.4 941 50.5
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 6.2e-217 758.4 877 52.9
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 8.1e-217 758.1 957 51.6
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 5.3e-216 755.4 930 53.0
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 4.9e-214 748.8 1019 49.6
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 1.1e-213 747.7 952 51.3
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 1.4e-213 747.3 979 50.6
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 2.8e-209 733.0 943 48.7
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.7e-206 723.8 932 51.4
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 3.8e-206 722.6 928 49.2
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.2e-205 719.5 928 52.0
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.1e-204 716.8 954 49.7
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 1.5e-202 710.7 917 50.8
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 4.8e-201 705.7 911 49.1
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 4.5e-199 699.1 943 50.1
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.3e-198 697.6 790 54.8
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.7e-198 697.2 908 49.3
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 6.5e-198 695.3 915 49.7
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 5.5e-197 692.2 921 50.3
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 2.1e-196 690.3 974 47.0
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 4.3e-194 682.6 897 47.9
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 1.3e-193 681.0 927 47.7
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 1.7e-193 680.6 903 49.4
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.4e-192 677.6 965 47.6
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.4e-192 677.6 942 49.0
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 2.6e-191 673.3 966 46.0
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 5.9e-191 672.2 932 46.5
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.9e-190 669.8 903 49.1
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 1.2e-188 664.5 887 48.6
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 5.7e-186 655.6 903 47.5
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 7.4e-186 655.2 920 47.3
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 7.4e-186 655.2 945 45.7
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 1.1e-184 651.4 897 46.4
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.4e-184 651.0 679 56.8
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 5.5e-181 639.0 865 48.9
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 2.7e-180 636.7 922 47.1
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 1.8e-179 634.0 896 47.4
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 1.8e-179 634.0 918 47.4
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 8.8e-179 631.7 920 47.4
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 2.2e-177 627.1 894 46.1
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 2.0e-175 620.5 911 46.3
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 5.9e-175 619.0 613 60.2
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.2e-173 613.2 943 45.8
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 2.1e-172 610.5 876 47.8
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.0e-170 604.0 924 44.6
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 2.0e-167 594.0 932 45.3
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 2.7e-167 593.6 954 43.8
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 7.7e-167 592.0 954 43.6
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 1.1e-165 588.2 958 44.2
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 4.2e-165 586.3 864 47.3
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 9.4e-165 585.1 869 47.2
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 1.2e-164 584.7 920 44.8
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.7e-164 583.6 940 43.0
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 1.7e-161 574.3 915 43.9
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.6e-159 567.8 913 42.3
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.6e-156 557.8 962 44.0
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 1.5e-154 551.2 922 43.4
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 4.1e-152 543.1 506 61.9
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 2.7e-151 540.4 875 44.0
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 3.5e-151 540.0 919 42.2
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 8.0e-148 528.9 899 43.2
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.3e-145 521.5 958 42.4
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.3e-145 521.5 958 42.4
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.9e-145 520.4 700 49.3
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 3.7e-145 520.0 951 43.1
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 1.4e-144 518.1 950 42.9
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.4e-144 518.1 959 43.0
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 4.1e-144 516.5 959 43.0
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.2e-143 515.0 945 41.4
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 2.7e-143 513.8 961 42.1
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 3.0e-142 510.4 941 40.7
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 3.9e-142 510.0 929 42.7
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 9.5e-141 505.4 933 39.7
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 1.2e-140 505.0 952 41.9
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 1.6e-140 504.6 677 49.8
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 2.3e-139 500.7 952 41.9
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.0e-138 497.7 639 50.7
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 2.6e-138 497.3 845 41.2
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 5.6e-133 479.6 953 40.0
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 2.3e-131 474.2 922 40.8
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 5.8e-130 469.5 696 46.3
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 7.1e-128 462.6 469 57.8
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 1.3e-121 441.8 859 39.8
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.7e-121 441.4 422 60.2
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 3.8e-113 413.7 854 39.5
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 8.7e-110 402.5 845 40.0
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.0e-107 393.7 914 34.1
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 1.3e-105 388.7 618 45.0
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.7e-97 361.7 928 34.5
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 4.9e-97 360.1 572 42.5
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 5.5e-96 356.7 441 56.5
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 2.1e-92 344.7 275 65.1
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 2.6e-90 337.8 1048 34.2
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 8.7e-86 322.8 338 56.8
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 1.3e-76 292.4 381 48.6
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.3e-76 292.4 832 32.5
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.4e-74 284.3 857 31.4
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 5.5e-72 276.9 829 32.0
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.8e-67 261.9 926 28.8
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 1.9e-64 251.9 744 33.7
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 1.6e-63 248.8 212 63.2
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 2.0e-58 231.9 421 43.0
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 5.0e-57 227.3 284 50.0
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 1.3e-52 212.6 281 48.4
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 1.7e-44 185.7 109 77.1
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.5e-42 177.9 544 31.6
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.1e-40 172.9 268 43.3
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 1.9e-40 172.2 342 40.4
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 8.9e-38 163.3 194 52.6
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 1.3e-36 159.5 498 29.9
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 4.6e-34 151.0 132 57.6
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.7e-33 149.1 265 47.5
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 3.9e-25 121.3 185 45.4
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 4.3e-24 117.9 108 54.6
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 2.4e-19 102.1 93 71.0
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.9e-17 94.7 152 38.8
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 1.9e-16 92.4 128 39.8
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.3e-16 91.3 76 55.3
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 4.0e-14 84.7 149 36.2
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 4.4e-13 81.3 116 48.3
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 1.7e-12 79.3 123 43.1
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.4e-11 76.3 44 75.0
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 3.2e-11 75.1 121 38.0
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 1.3e-09 69.7 223 27.8
Hund13661 Selenicereus undatus HOM05D003655 ORTHO05D004065 6.8e-06 57.4 72 55.6


User provided reference genes

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