Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.5e-77 292.7 140 100.0
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 7.6e-50 200.7 120 82.5
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 2.9e-49 198.7 120 81.7
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 2.9e-49 198.7 120 81.7
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 2.9e-49 198.7 120 81.7
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 8.4e-49 197.2 120 80.8
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 1.4e-48 196.4 120 80.0
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 3.2e-48 195.3 120 80.0
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 6.0e-47 191.0 120 77.5
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 6.0e-47 191.0 120 77.5
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 3.0e-46 188.7 120 76.7
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 3.9e-46 188.3 119 77.3
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 3.9e-46 188.3 120 77.5
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 8.6e-46 187.2 120 76.7
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 8.6e-46 187.2 120 75.8
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 1.1e-45 186.8 120 76.7
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.5e-45 186.4 120 75.8
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.5e-45 186.4 120 75.8
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 1.9e-45 186.0 120 75.8
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 2.5e-45 185.7 120 77.5
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 2.5e-45 185.7 120 77.5
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 4.3e-45 184.9 120 77.5
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 4.3e-45 184.9 120 75.8
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 5.6e-45 184.5 120 74.2
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 5.6e-45 184.5 120 75.0
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 5.6e-45 184.5 120 75.0
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 7.3e-45 184.1 120 74.2
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 7.3e-45 184.1 120 74.2
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 7.3e-45 184.1 119 76.5
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 9.6e-45 183.7 120 75.0
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 1.2e-44 183.3 120 73.3
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 1.2e-44 183.3 120 75.8
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 1.6e-44 183.0 120 75.8
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 1.6e-44 183.0 120 75.8
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 2.1e-44 182.6 120 75.0
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 2.1e-44 182.6 120 72.5
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 2.1e-44 182.6 120 74.2
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 2.1e-44 182.6 120 74.2
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 2.8e-44 182.2 120 74.2
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 4.7e-44 181.4 120 75.0
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 6.2e-44 181.0 120 74.2
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 6.2e-44 181.0 120 73.3
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 6.2e-44 181.0 120 75.0
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 6.2e-44 181.0 120 74.2
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 6.2e-44 181.0 120 75.0
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 1.4e-43 179.9 120 72.5
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 1.8e-43 179.5 120 72.5
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 1.8e-43 179.5 120 71.7
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 2.4e-43 179.1 120 73.3
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 3.1e-43 178.7 120 70.0
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 4.0e-43 178.3 120 70.0
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 4.0e-43 178.3 120 71.7
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 6.9e-43 177.6 120 71.7
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 6.9e-43 177.6 120 70.8
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 6.9e-43 177.6 120 70.8
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 8.9e-43 177.2 120 72.5
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 8.9e-43 177.2 120 72.5
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 8.9e-43 177.2 123 69.1
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.5e-42 176.4 120 70.8
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 1.5e-42 176.4 120 70.0
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 2.6e-42 175.6 120 70.0
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 2.6e-42 175.6 120 70.0
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 2.6e-42 175.6 120 70.8
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 3.4e-42 175.3 120 71.7
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 4.4e-42 174.9 120 70.0
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 5.8e-42 174.5 120 70.0
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 9.9e-42 173.7 120 70.0
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 1.3e-41 173.3 120 70.8
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 1.3e-41 173.3 120 70.8
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 2.2e-41 172.6 119 70.6
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 3.8e-41 171.8 120 70.0
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 3.8e-41 171.8 120 70.0
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 8.4e-41 170.6 120 69.2
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 1.4e-40 169.9 120 68.3
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 1.9e-40 169.5 120 68.3
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 2.4e-40 169.1 150 60.7
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 4.2e-40 168.3 150 59.3
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 5.4e-40 167.9 120 68.3
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 7.1e-40 167.5 120 66.7
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 7.1e-40 167.5 120 69.2
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 2.7e-39 165.6 120 67.5
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 1.0e-38 163.7 120 66.7
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 1.3e-38 163.3 120 64.2
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 6.6e-38 161.0 136 62.5
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 2.5e-37 159.1 120 65.0
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 4.3e-37 158.3 121 66.1
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.3e-36 156.8 120 65.8
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 4.8e-36 154.8 120 67.5
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 2.4e-35 152.5 120 61.7
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 1.1e-32 143.7 120 60.8
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 1.2e-31 140.2 120 57.5
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 1.6e-31 139.8 120 55.8
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 6.0e-31 137.9 95 69.5
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 5.1e-30 134.8 67 92.5
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 1.1e-29 133.7 120 54.2
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 2.8e-28 129.0 119 51.3
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 3.6e-28 128.6 119 51.3
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 1.2e-26 123.6 119 49.6
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 1.2e-23 113.6 119 45.4
Ciclev10013894m.g Citrus clementina HOM05D006539 ORTHO05D008694 6.2e-20 101.3 74 64.9
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 2.4e-19 99.4 121 48.8
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 3.1e-19 99.0 85 57.6
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 4.0e-19 98.6 119 40.3
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 1.5e-18 96.7 120 38.3
CSS0026858 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 2.2e-17 92.8 61 75.4
CSS0050509 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 2.2e-17 92.8 61 75.4
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 8.4e-17 90.9 120 40.8
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 8.2e-12 74.3 34 94.1
Dinv33805 Davidia involucrata HOM05D006539 ORTHO05D008694 1.1e-11 73.9 36 88.9
Ca_06844_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 2.6e-10 69.3 34 85.3
CSS0042966 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 1.0e-09 67.4 35 80.0
CSS0047989 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 1.0e-09 67.4 35 80.0
MD07G1180000 Malus domestica HOM05D006539 ORTHO05D248072 8.5e-09 64.3 120 35.8
Pp3c3_25470 Physcomitrium patens HOM05D006539 ORTHO05D008694 1.9e-08 63.2 71 39.4
Cre09.g392950 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D044332 1.2e-07 60.5 111 33.3
Ciclev10013255m.g Citrus clementina HOM05D006539 ORTHO05D008694 3.6e-07 58.9 29 93.1
Duzib268G0722 Durio zibethinus HOM05D006539 ORTHO05D186223 3.9e-06 55.5 35 74.3


User provided reference genes

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