Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0047 Fragaria x ananassa HOM05D004929 ORTHO05D006492 5.6e-217 757.3 377 100.0
FvH4_6g51800 Fragaria vesca HOM05D004929 ORTHO05D006492 1.0e-202 709.9 377 95.0
FAN09G2944 Fragaria x ananassa HOM05D004929 ORTHO05D006492 3.9e-202 708.0 377 94.7
FAN14G2766 Fragaria x ananassa HOM05D004929 ORTHO05D006492 6.7e-202 707.2 377 94.4
FAN05G4087 Fragaria x ananassa HOM05D004929 ORTHO05D006492 5.3e-199 697.6 377 93.9
RcHm_v2.0_Chr2g0173281 Rosa chinensis HOM05D004929 ORTHO05D006492 8.5e-189 663.7 375 89.6
MD09G1023000 Malus domestica HOM05D004929 ORTHO05D006492 1.8e-178 629.4 377 84.4
MD17G1022300 Malus domestica HOM05D004929 ORTHO05D006492 4.1e-175 618.2 377 82.8
Prupe.3G293800 Prunus persica HOM05D004929 ORTHO05D006492 9.1e-175 617.1 370 83.5
MELO3C021592.2 Cucumis melo HOM05D004929 ORTHO05D006492 1.0e-165 587.0 372 77.7
ClCG09G019380 Citrullus lanatus HOM05D004929 ORTHO05D006492 5.0e-165 584.7 371 77.6
CsaV3_5G027030 Cucumis sativus L. HOM05D004929 ORTHO05D006492 8.5e-165 583.9 370 77.8
Cfa007339 Carpinus fangiana HOM05D004929 ORTHO05D006492 1.1e-164 583.6 369 78.3
Nn8g40033 Nelumbo nucifera HOM05D004929 ORTHO05D006492 3.2e-164 582.0 361 78.4
Haze_14758 Corylus avellana HOM05D004929 ORTHO05D006492 9.4e-164 580.5 372 78.0
TAR633G2310 Trochodendron aralioides HOM05D004929 ORTHO05D006492 2.1e-163 579.3 367 77.1
CiPaw.03G045500 Carya illinoinensis HOM05D004929 ORTHO05D006492 6.8e-162 574.3 363 78.2
CiPaw.04G029600 Carya illinoinensis HOM05D004929 ORTHO05D006492 8.8e-162 573.9 360 78.3
Thecc.04G019500 Theobroma cacao HOM05D004929 ORTHO05D006492 8.8e-162 573.9 366 77.3
CAN.G473.20 Capsicum annuum HOM05D004929 ORTHO05D006492 2.6e-161 572.4 362 77.6
Nitab4.5_0001860g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 2.6e-161 572.4 364 76.9
Manes.15G151900 Manihot esculenta HOM05D004929 ORTHO05D006492 9.8e-161 570.5 365 77.0
GSVIVG01032385001 Vitis vinifera HOM05D004929 ORTHO05D006492 9.8e-161 570.5 365 76.4
Peaxi162Scf03028g00012 Petunia axillaris HOM05D004929 ORTHO05D006492 1.3e-160 570.1 358 78.8
Sed0027438 Sechium edule HOM05D004929 ORTHO05D006492 1.3e-160 570.1 367 77.1
Lju41A43T26 Lonicera japonica HOM05D004929 ORTHO05D006492 1.7e-160 569.7 363 76.3
THA.LOC104821096 Tarenaya hassleriana HOM05D004929 ORTHO05D006492 1.7e-160 569.7 375 74.7
CANSAT64G1903 Cannabis sativa HOM05D004929 ORTHO05D006492 3.7e-160 568.5 363 76.6
PGR142G3088 Punica granatum HOM05D004929 ORTHO05D006492 3.7e-160 568.5 375 74.7
Dinv25726 Davidia involucrata HOM05D004929 ORTHO05D006492 4.9e-160 568.2 374 75.1
Peaxi162Scf00129g01650 Petunia axillaris HOM05D004929 ORTHO05D006492 4.9e-160 568.2 358 78.5
Sed0020215 Sechium edule HOM05D004929 ORTHO05D006492 4.9e-160 568.2 370 75.9
Ciclev10015593m.g Citrus clementina HOM05D004929 ORTHO05D006492 1.1e-159 567.0 376 73.1
Cc09_g04510 Coffea canephora HOM05D004929 ORTHO05D006492 1.1e-159 567.0 366 76.0
Potri.001G343400 Populus trichocarpa HOM05D004929 ORTHO05D006492 1.8e-159 566.2 365 74.8
Duzib147G0164 Durio zibethinus HOM05D004929 ORTHO05D006492 2.4e-159 565.8 373 74.8
AL3G10510 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 3.1e-159 565.5 360 76.1
SalBow7G3047 Salvia bowleyana HOM05D004929 ORTHO05D006492 3.1e-159 565.5 366 75.7
AT3G01640 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 7.0e-159 564.3 374 73.8
QL02p074005 Quercus lobata HOM05D004929 ORTHO05D006492 7.0e-159 564.3 371 75.5
Sopen02g038230 Solanum pennellii HOM05D004929 ORTHO05D006492 9.2e-159 563.9 361 77.6
C03p39500 Brassica napus HOM05D004929 ORTHO05D006492 1.2e-158 563.5 364 74.7
Sabra16G0222700 Salix brachista HOM05D004929 ORTHO05D006492 1.2e-158 563.5 359 75.2
PGSC0003DMG400012608 Solanum tuberosum HOM05D004929 ORTHO05D006492 1.2e-158 563.5 364 76.4
Solyc02g093440.4 Solanum lycopersicum HOM05D004929 ORTHO05D006492 1.6e-158 563.1 361 77.3
Thhalv10020980m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 2.0e-158 562.8 378 72.8
BcaC01g04530 Brassica carinata HOM05D004929 ORTHO05D006492 2.7e-158 562.4 364 74.5
CARHR075280 Cardamine hirsuta HOM05D004929 ORTHO05D006492 2.7e-158 562.4 369 74.5
BraA03t12414Z Brassica rapa HOM05D004929 ORTHO05D006492 3.5e-158 562.0 365 74.2
BolC3t16218H Brassica oleracea HOM05D004929 ORTHO05D006492 7.7e-158 560.8 364 74.2
PSO699G0033 Papaver somniferum HOM05D004929 ORTHO05D006492 1.0e-157 560.5 362 74.6
PSO384G0906 Papaver somniferum HOM05D004929 ORTHO05D006492 1.3e-157 560.1 363 74.4
Aqoxy5G00914 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 2.9e-157 558.9 360 75.3
A03p32440 Brassica napus HOM05D004929 ORTHO05D006492 2.9e-157 558.9 365 74.0
Migut.K01411 Erythranthe guttata HOM05D004929 ORTHO05D006492 3.8e-157 558.5 364 74.5
Peaxi162Scf00080g01316 Petunia axillaris HOM05D004929 ORTHO05D005557 8.6e-157 557.4 362 74.9
MSTRG.3138 Avicennia marina HOM05D004929 ORTHO05D006492 3.3e-156 555.4 365 74.0
Actinidia05982 Actinidia chinensis HOM05D004929 ORTHO05D006492 4.3e-156 555.1 358 74.9
Sp3g00410 Schrenkiella parvula HOM05D004929 ORTHO05D006492 5.6e-156 554.7 374 72.5
Aa31LG5G10780 Aethionema arabicum HOM05D004929 ORTHO05D006492 9.5e-156 553.9 362 75.1
Rhsim10G0014700 Rhododendron simsii HOM05D004929 ORTHO05D006492 9.5e-156 553.9 363 74.9
vmacro05876 Vaccinium macrocarpon HOM05D004929 ORTHO05D006492 1.6e-155 553.1 375 72.0
Gohir.D09G029800 Gossypium hirsutum HOM05D004929 ORTHO05D006492 2.1e-155 552.7 379 71.8
Gorai.006G034800 Gossypium raimondii HOM05D004929 ORTHO05D006492 3.6e-155 552.0 379 72.0
Gohir.A09G030100 Gossypium hirsutum HOM05D004929 ORTHO05D006492 4.7e-155 551.6 379 71.5
Lsat_1_v5_gn_0_18301 Lactuca sativa HOM05D004929 ORTHO05D006492 6.1e-155 551.2 362 73.8
Thhalv10013912m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 5.2e-154 548.1 365 72.1
arahy.Tifrunner.gnm1.ann1.FEY4ZS Arachis hypogaea HOM05D004929 ORTHO05D006492 3.4e-153 545.4 358 74.9
HanXRQChr17g0548641 Helianthus annuus HOM05D004929 ORTHO05D006492 4.4e-153 545.0 367 73.0
arahy.Tifrunner.gnm1.ann1.NF5K9F Arachis hypogaea HOM05D004929 ORTHO05D006492 9.8e-153 543.9 358 74.6
AL6G25200 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 1.3e-152 543.5 377 70.3
Hund23289 Selenicereus undatus HOM05D004929 ORTHO05D006492 1.7e-152 543.1 357 73.9
Carub.0003s0042 Capsella rubella HOM05D004929 ORTHO05D006492 1.8e-151 539.7 374 70.3
TWI56G0780 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 1.8e-151 539.7 373 71.6
Carub.0006s1265 Capsella rubella HOM05D004929 ORTHO05D006492 3.2e-151 538.9 364 72.0
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 4.1e-151 538.5 372 69.4
HanXRQChr17g0548651 Helianthus annuus HOM05D004929 ORTHO05D006492 9.2e-151 537.3 355 73.5
TWI12G0632 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 1.2e-150 537.0 360 73.1
AT5G14470 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 2.0e-150 536.2 377 69.2
CARHR198840 Cardamine hirsuta HOM05D004929 ORTHO05D006492 2.0e-150 536.2 373 70.0
EL10Ac6g14097 Beta vulgaris HOM05D004929 ORTHO05D006492 2.7e-150 535.8 359 72.7
MBI05_g22077_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 7.8e-150 534.3 365 72.6
Aqoxy4G03095 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 1.3e-149 533.5 373 69.2
ECA246G1179 Erigeron canadensis HOM05D004929 ORTHO05D006492 1.3e-149 533.5 372 71.2
DCAR_021732 Daucus carota HOM05D004929 ORTHO05D006492 2.3e-149 532.7 349 73.9
Glyma.05G002500 Glycine max HOM05D004929 ORTHO05D006492 5.0e-149 531.6 358 71.8
BraA10t44472Z Brassica rapa HOM05D004929 ORTHO05D006492 2.5e-148 529.3 372 70.4
Phvul.004G004700 Phaseolus vulgaris HOM05D004929 ORTHO05D006492 4.3e-148 528.5 363 71.3
VMungo0464G1388 Vigna mungo HOM05D004929 ORTHO05D006492 3.6e-147 525.4 362 71.8
Duzib264G0638 Durio zibethinus HOM05D004929 ORTHO05D006492 6.2e-147 524.6 411 66.7
Ah.03g137000 Amaranthus hybridus HOM05D004929 ORTHO05D006492 3.1e-146 522.3 365 69.6
BcaB08g36997 Brassica carinata HOM05D004929 ORTHO05D006492 5.2e-146 521.5 363 70.8
Medtr6g004430 Medicago truncatula HOM05D004929 ORTHO05D006492 8.9e-146 520.8 358 72.6
HPP92_015407 Vanilla planifolia HOM05D004929 ORTHO05D006492 2.0e-145 519.6 359 70.2
Ca_04143_v3 Cicer arietinum L. HOM05D004929 ORTHO05D006492 7.5e-145 517.7 364 70.9
Lj2g0024676 Lotus japonicus HOM05D004929 ORTHO05D006492 9.8e-145 517.3 363 70.5
TPR.G31950 Trifolium pratense HOM05D004929 ORTHO05D006492 1.7e-144 516.5 363 70.5
Os11g0217300 Oryza sativa ssp. japonica HOM05D004929 ORTHO05D006492 3.7e-144 515.4 352 72.2
Lalb_Chr06g0176621 Lupinus albus HOM05D004929 ORTHO05D006492 4.9e-144 515.0 362 69.1
Zm00001eb025800 Zea mays HOM05D004929 ORTHO05D006492 1.1e-143 513.8 368 69.8
AUR62008872 Chenopodium quinoa HOM05D004929 ORTHO05D006492 1.9e-143 513.1 359 69.9
Oeu018151.1 Olea europaea HOM05D004929 ORTHO05D006492 3.0e-141 505.8 368 70.1
AUR62031837 Chenopodium quinoa HOM05D004929 ORTHO05D006492 5.0e-141 505.0 399 63.4
arahy.Tifrunner.gnm1.ann1.BJ3QP1 Arachis hypogaea HOM05D004929 ORTHO05D006492 1.1e-140 503.8 325 76.3
ATR0827G043 Amborella trichopoda HOM05D004929 ORTHO05D006492 8.1e-139 497.7 379 66.0
BcaC04g19032 Brassica carinata HOM05D004929 ORTHO05D006492 1.5e-137 493.4 376 67.6
BcaB08g36995 Brassica carinata HOM05D004929 ORTHO05D006492 7.1e-135 484.6 382 66.2
COL.COLO4_29172 Corchorus olitorius HOM05D004929 ORTHO05D006492 3.1e-130 469.2 366 66.1
A10p24090 Brassica napus HOM05D004929 ORTHO05D006492 6.4e-128 461.5 362 63.5
SHI00354 Sapria himalayana HOM05D004929 ORTHO05D006492 1.1e-127 460.7 355 63.7
Eucgr.I01731 Eucalyptus grandis HOM05D004929 ORTHO05D006492 7.8e-126 454.5 299 75.6
Dinv33427 Davidia involucrata HOM05D004929 ORTHO05D006492 2.1e-123 446.4 289 75.4
SGA_v2.0_scaffold30G12409 Striga asiatica HOM05D004929 ORTHO05D006492 1.1e-122 444.1 287 76.3
SMO145G0043 Selaginella moellendorffii HOM05D004929 ORTHO05D006492 1.4e-122 443.7 345 63.5
Nitab4.5_0006683g0060 Nicotiana tabacum HOM05D004929 ORTHO05D006492 4.4e-121 438.7 362 63.3
Sc03g0007290 Simmondsia chinensis HOM05D004929 ORTHO05D006492 1.6e-118 430.3 280 75.4
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 2.1e-115 419.9 288 71.5
Psat1g053480 Pisum sativum HOM05D004929 ORTHO05D006492 4.2e-111 405.6 280 72.1
HPP92_026990 Vanilla planifolia HOM05D004929 ORTHO05D006492 2.1e-110 403.3 281 70.5
Mapoly0023s0058 Marchantia polymorpha HOM05D004929 ORTHO05D006492 7.9e-110 401.4 359 58.2
AagrBONN_evm.TU.Sc2ySwM_228.449 Anthoceros agrestis HOM05D000718 ORTHO05D002712 2.3e-109 399.8 345 59.1
CBR_g3618 Chara braunii HOM05D004929 ORTHO05D006492 4.0e-106 389.0 352 57.4
Atru.chr6.2430 Acer truncatum HOM05D004929 ORTHO05D006492 1.4e-103 380.6 250 74.4
SGA_v2.0_scaffold47G17516 Striga asiatica HOM05D004929 ORTHO05D006492 3.2e-103 379.4 348 59.8
Pp3c22_9380 Physcomitrium patens HOM05D004929 ORTHO05D006492 1.5e-100 370.5 280 64.3
ATR0681G379 Amborella trichopoda HOM05D004929 ORTHO05D006492 4.0e-98 362.5 261 69.3
BolC9t59108H Brassica oleracea HOM05D004929 ORTHO05D006492 1.0e-96 357.8 384 52.6
C09p62710 Brassica napus HOM05D004929 ORTHO05D006492 3.8e-96 355.9 375 53.1
SHI25478 Sapria himalayana HOM05D004929 ORTHO05D006492 1.0e-93 347.8 295 60.0
Nitab4.5_0000040g0670 Nicotiana tabacum HOM05D004929 ORTHO05D006492 8.2e-91 338.2 363 53.2
Cre02.g107600 Chlamydomonas reinhardtii HOM05D004929 ORTHO05D006492 4.1e-90 335.9 370 51.6
CDE07G0337 Ceratophyllum demersum HOM05D004929 ORTHO05D006492 1.8e-82 310.5 216 68.5
MCO09G795 Micromonas commoda HOM05D004929 ORTHO05D006492 6.9e-82 308.5 361 47.1
PRCOL_00005101 Prasinoderma coloniale HOM05D004929 ORTHO05D006492 2.2e-80 303.5 361 48.8
Nitab4.5_0001550g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.7e-75 287.3 247 63.2
Oeu033729.3 Olea europaea HOM05D004929 ORTHO05D006492 1.5e-68 264.2 220 65.0
BcaB08g36982 Brassica carinata HOM05D004929 ORTHO05D006492 1.0e-64 251.5 167 72.5
MBI05_g01825_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 6.3e-59 232.3 231 54.1
BolC9t59344H Brassica oleracea HOM05D004929 ORTHO05D006492 4.4e-52 209.5 208 55.3
Atru.chr6.2429 Acer truncatum HOM05D004929 ORTHO05D006492 1.9e-47 194.1 112 78.6
MSTRG.3285 Avicennia marina HOM05D004929 ORTHO05D006492 2.8e-46 190.3 143 67.1
CDE07G1161 Ceratophyllum demersum HOM05D004929 ORTHO05D043891 5.7e-36 156.0 114 67.5
MD17G1022500 Malus domestica HOM05D004929 ORTHO05D006492 1.5e-28 131.3 86 76.7
A10p26090 Brassica napus HOM05D004929 ORTHO05D006492 2.2e-27 127.5 134 51.5
BcaNung06761 Brassica carinata HOM05D004929 ORTHO05D006492 8.6e-24 115.5 70 75.7
Sp6g29550 Schrenkiella parvula HOM05D004929 ORTHO05D043891 1.2e-20 105.1 66 74.2
Sopen02g038030 Solanum pennellii HOM05D004929 ORTHO05D006492 4.9e-19 99.8 71 63.4
arahy.Tifrunner.gnm1.ann1.6CI6DX Arachis hypogaea HOM05D004929 ORTHO05D031499 3.8e-11 73.6 56 62.5
arahy.Tifrunner.gnm1.ann1.XQCE19 Arachis hypogaea HOM05D004929 ORTHO05D031499 2.7e-09 67.4 46 60.9
Glyma.19G002700 Glycine max HOM05D004929 ORTHO05D215243 1.5e-07 61.6 81 46.9
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 1.2e-06 58.5 227 25.6
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 4.7e-06 56.6 238 24.8


User provided reference genes

Program Settings