Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.3e-83 311.2 152 100.0
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.3e-83 311.2 152 100.0
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.3e-83 311.2 152 100.0
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.3e-83 311.2 152 100.0
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.3e-83 311.2 152 100.0
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 4.3e-83 311.2 152 100.0
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 9.6e-83 310.1 152 99.3
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 5.3e-81 304.3 152 97.4
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 1.2e-80 303.1 152 96.7
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 1.7e-79 299.3 152 94.7
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 1.9e-78 295.8 152 94.1
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 1.9e-78 295.8 152 94.1
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 2.4e-78 295.4 152 93.4
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 3.2e-78 295.0 152 93.4
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 3.2e-78 295.0 152 93.4
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 3.2e-78 295.0 152 93.4
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 4.2e-78 294.7 152 92.8
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 4.2e-78 294.7 152 92.8
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 4.2e-78 294.7 152 92.8
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 5.5e-78 294.3 152 92.8
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 5.5e-78 294.3 152 92.8
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 5.5e-78 294.3 152 92.1
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 7.1e-78 293.9 152 92.8
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 7.1e-78 293.9 152 92.8
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 9.3e-78 293.5 152 92.8
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 1.6e-77 292.7 152 92.1
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 2.1e-77 292.4 152 92.1
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 2.7e-77 292.0 152 91.4
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 3.5e-77 291.6 152 91.4
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 3.5e-77 291.6 152 91.4
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 3.5e-77 291.6 152 91.4
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 3.5e-77 291.6 152 90.8
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 4.6e-77 291.2 152 92.8
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 6.0e-77 290.8 153 92.2
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 7.9e-77 290.4 152 90.1
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 7.9e-77 290.4 152 92.8
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 7.9e-77 290.4 152 92.8
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 1.0e-76 290.0 151 92.1
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 1.3e-76 289.7 154 90.3
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 1.3e-76 289.7 152 92.1
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.3e-76 289.7 151 93.4
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.3e-76 289.7 151 93.4
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 1.8e-76 289.3 152 92.8
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 1.8e-76 289.3 152 91.4
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.8e-76 289.3 152 90.1
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 2.3e-76 288.9 152 91.4
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 2.3e-76 288.9 150 90.7
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 2.3e-76 288.9 152 92.1
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 3.0e-76 288.5 148 93.2
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 3.0e-76 288.5 150 91.3
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 3.9e-76 288.1 152 92.1
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 3.9e-76 288.1 152 90.8
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 3.9e-76 288.1 151 91.4
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 3.9e-76 288.1 152 89.5
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 5.1e-76 287.7 154 89.0
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 5.1e-76 287.7 148 92.6
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 5.1e-76 287.7 148 92.6
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 5.1e-76 287.7 152 89.5
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 8.7e-76 287.0 152 89.5
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 8.7e-76 287.0 152 90.8
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.1e-75 286.6 149 89.9
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.5e-75 286.2 152 89.5
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.5e-75 286.2 152 89.5
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 1.9e-75 285.8 152 89.5
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 1.9e-75 285.8 149 91.3
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 1.9e-75 285.8 151 90.1
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 3.3e-75 285.0 152 88.8
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 5.6e-75 284.3 152 88.8
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 7.4e-75 283.9 151 90.7
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 7.4e-75 283.9 147 91.2
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 7.4e-75 283.9 151 90.1
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 9.6e-75 283.5 152 88.2
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 1.3e-74 283.1 149 92.6
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 2.1e-74 282.3 151 88.7
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 2.1e-74 282.3 148 91.2
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 4.8e-74 281.2 157 86.6
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 4.8e-74 281.2 152 88.2
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 6.2e-74 280.8 147 89.8
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 6.2e-74 280.8 147 89.8
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 8.1e-74 280.4 152 88.2
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 8.1e-74 280.4 154 87.7
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 8.1e-74 280.4 148 90.5
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 1.1e-73 280.0 155 87.1
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.8e-73 279.3 152 88.2
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 3.1e-73 278.5 152 87.5
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 3.1e-73 278.5 151 88.1
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 3.1e-73 278.5 151 88.1
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 3.1e-73 278.5 152 88.2
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 3.1e-73 278.5 150 90.7
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 4.0e-73 278.1 147 89.1
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 4.0e-73 278.1 152 87.5
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 5.3e-73 277.7 152 88.2
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 6.9e-73 277.3 148 89.2
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 6.9e-73 277.3 148 89.2
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 9.0e-73 276.9 152 86.2
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 9.0e-73 276.9 144 90.3
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 9.0e-73 276.9 152 88.8
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 1.5e-72 276.2 148 88.5
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 1.5e-72 276.2 148 88.5
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 1.5e-72 276.2 148 88.5
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 1.5e-72 276.2 148 88.5
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 2.6e-72 275.4 148 88.5
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 3.4e-72 275.0 148 87.8
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 3.4e-72 275.0 146 92.5
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 1.0e-71 273.5 148 87.2
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 1.0e-71 273.5 148 87.8
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 1.0e-71 273.5 148 87.8
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 2.9e-71 271.9 148 86.5
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 2.9e-71 271.9 151 86.8
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 3.8e-71 271.6 143 90.9
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 1.4e-70 269.6 144 89.6
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 1.6e-69 266.2 156 83.3
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 2.7e-69 265.4 143 90.2
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 3.5e-69 265.0 140 90.0
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 7.9e-69 263.8 148 86.5
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 2.1e-66 255.8 139 87.8
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 1.4e-65 253.1 132 89.4
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 3.1e-65 251.9 132 89.4
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 4.1e-65 251.5 132 90.9
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 5.3e-65 251.1 131 90.8
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 5.3e-65 251.1 131 90.8
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 5.9e-64 247.7 154 79.2
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 5.9e-64 247.7 132 87.9
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 7.6e-64 247.3 132 89.4
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 1.0e-63 246.9 132 89.4
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 1.7e-63 246.1 140 85.7
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.7e-63 246.1 129 89.1
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 2.2e-63 245.7 134 88.1
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 2.9e-63 245.4 130 87.7
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 3.8e-63 245.0 150 78.7
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 3.8e-63 245.0 131 89.3
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 3.8e-63 245.0 130 88.5
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 5.0e-63 244.6 132 86.4
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 6.5e-63 244.2 127 89.8
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 8.5e-63 243.8 130 88.5
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 8.5e-63 243.8 130 87.7
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 1.4e-62 243.0 152 80.3
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.9e-62 242.7 147 79.6
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.5e-62 242.3 132 86.4
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 3.2e-62 241.9 134 84.3
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 4.2e-62 241.5 132 84.8
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 1.8e-60 236.1 143 74.1
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 1.8e-60 236.1 144 78.5
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 3.9e-60 235.0 144 73.6
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 5.1e-60 234.6 151 73.5
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 2.0e-56 222.6 157 71.3
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 5.1e-52 208.0 187 59.4
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 2.6e-51 205.7 116 86.2
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 5.7e-51 204.5 144 72.9
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 7.4e-51 204.1 126 77.0
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 2.9e-47 192.2 103 89.3
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 5.0e-47 191.4 103 88.3
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 3.2e-46 188.7 116 74.1
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 5.5e-46 188.0 103 85.4
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 5.3e-41 171.4 87 89.7
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 1.0e-39 167.2 115 74.8
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 1.2e-37 160.2 87 83.9
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 3.6e-37 158.7 83 90.4
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 4.0e-36 155.2 81 91.4
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 1.7e-34 149.8 74 95.9
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.1e-33 147.1 147 57.1
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.2e-32 143.7 72 95.8
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.3e-26 123.6 71 81.7
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 4.8e-26 121.7 71 81.7
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.8e-25 119.8 78 75.6
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 2.4e-25 119.4 71 80.3
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 3.5e-16 89.0 45 95.6
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 2.9e-15 85.9 46 87.0
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 8.9e-12 74.3 74 51.4


User provided reference genes

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