Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.6e-302 1042.0 511 100.0
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 3.6e-275 951.0 514 92.8
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 3.9e-261 904.4 511 89.0
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 1.1e-260 902.9 511 88.8
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 3.4e-249 864.8 493 88.4
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 2.3e-245 852.0 506 84.0
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 6.7e-229 797.3 509 77.2
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 9.6e-228 793.5 503 77.7
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 1.8e-226 789.3 503 77.9
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 2.0e-209 732.6 500 71.6
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 8.5e-208 727.2 509 70.5
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 1.4e-205 719.9 506 70.2
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 1.4e-205 719.9 495 71.5
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 5.1e-205 718.0 505 70.3
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 4.4e-204 714.9 502 69.9
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 2.8e-203 712.2 502 68.9
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 8.2e-203 710.7 507 70.4
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 3.1e-202 708.8 501 69.1
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 5.3e-202 708.0 503 70.2
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 5.3e-202 708.0 501 69.3
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 6.9e-202 707.6 495 69.9
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 9.1e-202 707.2 505 68.3
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 1.2e-201 706.8 512 69.3
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 1.2e-201 706.8 501 69.3
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 2.0e-201 706.1 507 68.4
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 4.5e-201 704.9 505 69.9
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 4.5e-201 704.9 503 70.6
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 4.5e-201 704.9 503 70.6
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 5.9e-201 704.5 501 69.5
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 7.7e-201 704.1 496 71.8
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 7.7e-201 704.1 498 70.3
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 1.3e-200 703.4 502 67.7
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 3.8e-200 701.8 499 69.7
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 1.4e-199 699.9 470 72.3
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 1.9e-199 699.5 499 68.5
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 2.5e-199 699.1 501 69.1
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 5.5e-199 698.0 499 67.7
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 7.2e-199 697.6 499 68.5
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 2.1e-198 696.0 499 67.5
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 2.1e-198 696.0 499 67.5
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 2.1e-198 696.0 504 68.3
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 3.6e-198 695.3 505 67.9
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 6.1e-198 694.5 499 70.1
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 7.9e-198 694.1 495 68.1
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 1.0e-197 693.7 498 68.7
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 1.8e-197 693.0 499 68.1
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 2.3e-197 692.6 506 66.8
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 3.9e-197 691.8 498 68.1
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 6.7e-197 691.0 494 68.6
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 8.8e-197 690.6 499 67.7
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 8.8e-197 690.6 509 66.8
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 2.6e-196 689.1 498 67.7
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 3.3e-196 688.7 539 65.1
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 5.7e-196 688.0 500 66.6
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 7.4e-196 687.6 497 67.6
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 3.7e-195 685.3 540 65.4
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 6.3e-195 684.5 483 68.3
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 6.3e-195 684.5 499 66.7
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 6.3e-195 684.5 499 68.7
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 8.2e-195 684.1 504 68.3
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 8.2e-195 684.1 509 65.8
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 1.8e-194 682.9 498 67.5
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 2.4e-194 682.6 493 67.3
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 7.0e-194 681.0 505 65.9
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.2e-193 680.2 493 67.7
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 5.9e-193 677.9 495 67.5
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 1.0e-192 677.2 502 64.9
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 1.0e-192 677.2 500 68.0
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 2.9e-192 675.6 499 65.7
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 3.8e-192 675.2 499 66.1
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 6.5e-192 674.5 504 64.9
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 1.5e-191 673.3 499 67.1
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 1.9e-191 672.9 486 67.5
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.9e-191 672.9 493 66.7
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 2.5e-191 672.5 503 64.4
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 2.5e-191 672.5 495 67.1
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 5.5e-191 671.4 518 63.7
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 2.1e-190 669.5 501 66.5
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 4.7e-190 668.3 504 64.7
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 6.1e-190 667.9 517 66.2
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 6.1e-190 667.9 495 66.5
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 1.4e-189 666.8 501 66.3
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 1.8e-189 666.4 499 66.3
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 5.2e-189 664.8 495 65.9
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 8.2e-187 657.5 469 68.4
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 1.6e-185 653.3 498 66.5
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 3.8e-184 648.7 644 54.2
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 6.5e-184 647.9 503 64.0
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 1.5e-183 646.7 548 60.8
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 9.4e-183 644.0 501 61.9
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 2.7e-182 642.5 502 64.1
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 2.7e-182 642.5 583 57.5
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 6.8e-181 637.9 497 64.6
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 3.4e-180 635.6 483 65.2
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 2.5e-175 619.4 503 62.0
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 1.8e-173 613.2 469 63.5
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 2.3e-168 596.3 427 70.3
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 5.7e-164 581.6 488 59.2
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 1.4e-162 577.0 424 66.3
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 1.2e-161 573.9 429 65.5
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 1.0e-160 570.9 405 70.9
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 1.2e-158 563.9 404 70.0
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 1.9e-146 523.5 511 52.8
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 2.4e-146 523.1 485 55.7
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 1.6e-145 520.4 443 62.1
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 1.9e-143 513.5 482 54.8
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 1.6e-142 510.4 480 54.2
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 2.1e-142 510.0 495 51.1
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 5.1e-136 488.8 496 53.2
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 8.4e-131 471.5 467 55.2
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 5.6e-127 458.8 489 49.7
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 3.9e-120 436.0 322 65.5
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 5.6e-119 432.2 501 48.9
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 2.1e-118 430.3 324 62.7
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 1.1e-114 417.9 317 63.1
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 1.1e-109 401.4 249 71.9
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 1.2e-108 397.9 500 45.0
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 2.7e-97 360.1 299 60.5
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 1.4e-93 347.8 580 38.6
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 4.1e-93 346.3 473 43.1
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 7.9e-89 332.0 299 59.2
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 9.1e-85 318.5 499 37.1
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 1.2e-76 291.6 299 54.2
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 2.0e-76 290.8 292 54.8
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 3.8e-67 260.0 286 49.7
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 1.1e-66 258.5 201 65.7
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 3.6e-65 253.4 158 73.4
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 2.0e-63 247.7 178 69.1
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.7e-60 237.3 184 64.1
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 3.0e-56 223.8 157 72.0
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 5.9e-52 209.5 209 52.2
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 2.3e-51 207.6 286 43.4
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.5e-42 178.3 111 79.3
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 4.3e-42 176.8 115 73.9
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 4.0e-40 170.2 103 83.5
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 1.7e-38 164.9 107 75.7
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 3.7e-38 163.7 108 75.0
Phvul.010G113266 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 4.9e-38 163.3 116 62.1
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 2.1e-36 157.9 109 70.6
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 1.1e-32 145.6 91 76.9
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 9.9e-31 139.0 91 64.8
TPR.G10834 Trifolium pratense HOM05D004762 ORTHO05D005972 1.3e-30 138.7 95 65.3
Hma1.2p1_0812F.1_g222370 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 6.4e-30 136.3 385 28.1
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 8.4e-22 109.4 103 56.3
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 1.4e-21 108.6 71 77.5
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 1.4e-21 108.6 71 77.5
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 1.4e-21 108.6 71 77.5
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 3.5e-20 104.0 66 75.8
arahy.Tifrunner.gnm1.ann1.SGI312 Arachis hypogaea HOM05D004762 ORTHO05D005972 2.3e-19 101.3 68 73.5
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 7.3e-18 96.3 96 52.1
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 1.1e-13 82.4 44 86.4
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 1.3e-11 75.5 42 83.3
Sed0021837 Sechium edule HOM05D004762 ORTHO05D005972 2.5e-10 71.2 43 79.1
MD02G1220900 Malus domestica HOM05D004762 ORTHO05D005972 3.3e-10 70.9 41 73.2
Nitab4.5_0004804g0050 Nicotiana tabacum HOM05D004762 ORTHO05D005972 4.3e-10 70.5 49 69.4
Lsat_1_v5_gn_3_79340 Lactuca sativa HOM05D004762 ORTHO05D231769 1.8e-08 65.1 77 49.4
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 2.4e-08 64.7 185 30.3
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 4.0e-08 63.9 39 79.5
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 4.0e-08 63.9 39 79.5
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 5.3e-08 63.5 203 29.1
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 5.3e-08 63.5 203 29.1
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 9.0e-08 62.8 203 29.6
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 1.2e-07 62.4 39 76.9
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 1.5e-07 62.0 205 30.2
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 1.5e-07 62.0 194 29.9
GSVIVG01022727001 Vitis vinifera HOM05D004762 ORTHO05D005972 1.3e-06 58.9 51 52.9
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 2.2e-06 58.2 193 30.1
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 3.8e-06 57.4 65 52.3
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 4.9e-06 57.0 184 29.9
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 4.9e-06 57.0 234 28.6
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 8.4e-06 56.2 201 28.4
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 8.4e-06 56.2 193 30.1
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 8.4e-06 56.2 193 29.5


User provided reference genes

Program Settings