Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.3e-123 445.7 240 100.0
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 6.3e-121 437.6 240 96.7
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.0e-119 432.6 240 96.2
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 7.7e-119 430.6 238 92.0
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 4.2e-117 424.9 239 95.0
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 1.1e-101 373.6 242 79.3
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 7.5e-74 281.2 244 60.7
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 1.3e-70 270.4 244 59.8
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 5.4e-64 248.4 242 56.2
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 7.1e-64 248.1 148 94.6
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 9.2e-64 247.7 245 56.3
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 1.6e-63 246.9 244 57.0
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 2.1e-63 246.5 246 55.3
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 2.1e-63 246.5 246 55.3
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 1.3e-62 243.8 253 54.2
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 8.6e-62 241.1 249 54.2
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 3.3e-61 239.2 247 53.4
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 7.3e-61 238.0 247 56.3
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 9.6e-61 237.7 240 53.8
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 3.6e-60 235.7 247 55.9
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 3.6e-60 235.7 240 55.8
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 6.2e-60 235.0 246 55.7
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 8.1e-60 234.6 240 53.3
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 5.2e-59 231.9 242 54.5
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 1.5e-58 230.3 248 54.0
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 4.4e-58 228.8 242 50.8
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 5.8e-58 228.4 248 52.8
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 1.7e-57 226.9 255 50.2
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 1.7e-57 226.9 226 54.0
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 2.9e-57 226.1 253 52.2
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 2.9e-57 226.1 248 52.4
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 4.9e-57 225.3 240 52.9
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 6.4e-57 224.9 249 51.4
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 1.4e-56 223.8 256 49.2
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 1.4e-56 223.8 252 51.6
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 1.9e-56 223.4 249 51.8
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 3.2e-56 222.6 220 56.4
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 1.2e-55 220.7 256 48.8
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 1.6e-55 220.3 240 49.2
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 2.1e-55 219.9 254 51.6
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 2.7e-55 219.5 250 51.2
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 3.5e-55 219.2 241 51.5
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 6.0e-55 218.4 241 51.0
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 6.0e-55 218.4 250 50.8
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 7.8e-55 218.0 255 49.4
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 2.3e-54 216.5 247 52.6
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 2.3e-54 216.5 247 52.6
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 3.9e-54 215.7 245 52.2
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 5.1e-54 215.3 246 50.4
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 5.1e-54 215.3 252 50.4
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 6.6e-54 214.9 247 50.6
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 1.1e-53 214.2 268 47.4
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 3.3e-53 212.6 248 52.0
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 3.3e-53 212.6 250 48.8
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 9.6e-53 211.1 208 54.3
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 9.6e-53 211.1 250 47.6
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 9.6e-53 211.1 251 50.2
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 2.1e-52 209.9 249 48.6
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 2.8e-52 209.5 248 50.4
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 3.6e-52 209.1 167 65.3
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 3.6e-52 209.1 242 50.8
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 4.8e-52 208.8 242 49.6
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 1.1e-51 207.6 256 48.0
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 1.4e-51 207.2 225 51.1
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 1.4e-51 207.2 250 48.8
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 3.1e-51 206.1 237 50.2
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 3.1e-51 206.1 243 50.2
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 9.0e-51 204.5 246 50.4
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 1.2e-50 204.1 247 47.0
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 1.5e-50 203.8 247 47.4
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 2.0e-50 203.4 250 48.0
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 2.0e-50 203.4 247 49.0
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 2.0e-50 203.4 246 50.0
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 2.6e-50 203.0 249 48.6
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 2.6e-50 203.0 232 48.7
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 2.6e-50 203.0 246 48.8
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 3.4e-50 202.6 243 45.3
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 3.4e-50 202.6 240 47.1
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 4.5e-50 202.2 248 49.6
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 4.5e-50 202.2 249 47.4
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 5.8e-50 201.8 247 48.6
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 5.8e-50 201.8 234 48.3
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 5.8e-50 201.8 250 48.8
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 7.6e-50 201.4 242 48.3
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 1.3e-49 200.7 248 49.2
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 8.4e-49 198.0 264 46.2
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 8.4e-49 198.0 242 46.3
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 1.4e-48 197.2 257 47.5
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 1.4e-48 197.2 254 46.5
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 1.9e-48 196.8 243 47.7
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 3.2e-48 196.1 245 48.2
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 3.2e-48 196.1 235 46.0
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 4.2e-48 195.7 239 46.9
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 4.2e-48 195.7 240 47.1
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 5.4e-48 195.3 244 48.4
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 5.4e-48 195.3 244 48.4
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 5.4e-48 195.3 230 47.8
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 9.3e-48 194.5 246 44.3
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.2e-47 194.1 220 48.6
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 2.1e-47 193.4 225 48.9
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 2.1e-47 193.4 249 46.2
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 6.0e-47 191.8 252 44.8
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 6.0e-47 191.8 240 45.8
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.0e-46 191.0 220 48.6
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 3.0e-46 189.5 246 46.3
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 3.0e-46 189.5 223 47.1
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 5.1e-46 188.7 164 56.7
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 1.1e-45 187.6 220 48.2
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 1.9e-45 186.8 256 45.7
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 2.5e-45 186.4 246 46.7
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 3.3e-45 186.0 250 44.4
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 3.3e-45 186.0 165 56.4
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 5.6e-45 185.3 247 44.9
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 5.6e-45 185.3 196 54.1
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 7.4e-45 184.9 240 46.7
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 1.3e-44 184.1 247 45.3
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 1.6e-44 183.7 247 44.9
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 1.6e-44 183.7 240 44.2
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 2.1e-44 183.3 226 48.7
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 2.1e-44 183.3 252 44.4
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 2.8e-44 183.0 246 43.9
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 8.1e-44 181.4 255 43.9
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 1.8e-43 180.3 248 43.5
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 2.4e-43 179.9 240 43.8
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 1.5e-42 177.2 174 58.6
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 5.8e-42 175.3 240 43.3
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 4.2e-40 169.1 266 40.2
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 7.1e-40 168.3 240 43.3
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.6e-39 167.2 247 43.3
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 1.6e-39 167.2 223 43.9
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 4.6e-39 165.6 145 57.9
MBI06_g04286_MAGBIO Magnolia biondii HOM05D004719 ORTHO05D005519 4.6e-39 165.6 241 44.8
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 6.7e-38 161.8 158 52.5
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 8.7e-38 161.4 216 42.6
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 1.7e-33 147.1 160 51.9
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 3.8e-33 146.0 248 40.3
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 3.8e-33 146.0 252 38.9
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 1.8e-30 137.1 256 36.3
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 1.5e-29 134.0 212 39.6
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 8.2e-28 128.3 141 47.5
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 7.6e-26 121.7 64 89.1
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 5.5e-24 115.5 77 70.1
Pp3c1_11420 Physcomitrium patens HOM05D004719 ORTHO05D005519 5.5e-24 115.5 242 35.5
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 1.1e-21 107.8 58 81.0
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 2.5e-21 106.7 56 87.5
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 3.3e-21 106.3 54 92.6
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 5.7e-21 105.5 196 39.3
C03p17810 Brassica napus HOM05D004719 ORTHO05D005519 5.9e-18 95.5 147 43.5
FvH4_6g34200 Fragaria vesca HOM05D004719 ORTHO05D005519 9.4e-16 88.2 46 89.1
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 1.6e-15 87.4 97 51.5
FAN16G3662 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.5e-13 80.9 49 79.6
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 2.0e-13 80.5 76 52.6
FAN06G3132 Fragaria x ananassa HOM05D004719 ORTHO05D005519 6.9e-11 72.0 45 75.6
CDE09G0250 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 9.1e-11 71.6 50 62.0
CBR_g84869 Chara braunii HOM05D004719 ORTHO05D005519 2.2e-09 67.0 59 55.9
Hund30245 Selenicereus undatus HOM05D004719 ORTHO05D005519 6.5e-09 65.5 100 45.0
CBR_g83324 Chara braunii HOM05D004719 ORTHO05D005519 2.5e-08 63.5 68 42.6
FAN25G3581 Fragaria x ananassa HOM05D017504 ORTHO05D022678 1.2e-07 61.2 30 93.3
Sopen06g012490 Solanum pennellii HOM05D004719 ORTHO05D005519 5.2e-06 55.8 50 52.0


User provided reference genes

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