Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G1267 Fragaria x ananassa HOM05D004650 ORTHO05D005715 1.1e-33 146.0 68 100.0
FvH4_7g12280 Fragaria vesca HOM05D004650 ORTHO05D005715 1.0e-23 112.8 55 94.5
FAN10G1385 Fragaria x ananassa HOM05D004650 ORTHO05D005715 1.0e-23 112.8 55 94.5
FAN10G4111 Fragaria x ananassa HOM05D004650 ORTHO05D005715 1.0e-23 112.8 55 94.5
FvH4_2g09800 Fragaria vesca HOM05D004650 ORTHO05D005715 6.1e-21 103.6 57 87.7
FAN24G0050 Fragaria x ananassa HOM05D004650 ORTHO05D005715 6.1e-21 103.6 57 87.7
FAN27G3342 Fragaria x ananassa HOM05D004650 ORTHO05D005715 6.1e-21 103.6 57 87.7
FAN20G2064 Fragaria x ananassa HOM05D004650 ORTHO05D005715 1.4e-20 102.4 57 86.0
RcHm_v2.0_Chr6g0266121 Rosa chinensis HOM05D004650 ORTHO05D005715 1.8e-20 102.1 53 88.7
CiPaw.06G132000 Carya illinoinensis HOM05D004650 ORTHO05D005715 5.3e-17 90.5 53 73.6
MD05G1059700 Malus domestica HOM05D004650 ORTHO05D005715 1.6e-16 89.0 58 70.7
MD10G1067900 Malus domestica HOM05D004650 ORTHO05D005715 1.6e-16 89.0 58 70.7
Prupe.8G089700 Prunus persica HOM05D004650 ORTHO05D005715 2.0e-16 88.6 56 75.0
Cfa005063 Carpinus fangiana HOM05D004650 ORTHO05D005715 2.7e-16 88.2 70 62.9
CANSAT11G1974 Cannabis sativa HOM05D004650 ORTHO05D005715 4.5e-16 87.4 66 62.1
Haze_02320 Corylus avellana HOM05D004650 ORTHO05D005715 7.7e-16 86.7 57 71.9
QL11p045374 Quercus lobata HOM05D004650 ORTHO05D005715 2.9e-15 84.7 57 70.2
Thecc.02G079400 Theobroma cacao HOM05D004650 ORTHO05D005715 5.5e-14 80.5 55 70.9
Cpa.g.sc150.59 Carica papaya HOM05D004650 ORTHO05D005715 7.2e-14 80.1 66 60.6
Phvul.011G210900 Phaseolus vulgaris HOM05D004650 ORTHO05D005715 1.2e-13 79.3 57 66.7
GSVIVG01024222001 Vitis vinifera HOM05D004650 ORTHO05D005715 1.2e-13 79.3 56 71.4
Nn5g29730 Nelumbo nucifera HOM05D004650 ORTHO05D005715 1.6e-13 79.0 60 63.3
COL.COLO4_26000 Corchorus olitorius HOM05D004650 ORTHO05D005715 2.1e-13 78.6 55 69.1
AUR62002225 Chenopodium quinoa HOM05D004650 ORTHO05D005715 3.6e-13 77.8 53 66.0
AUR62015438 Chenopodium quinoa HOM05D004650 ORTHO05D005715 3.6e-13 77.8 53 66.0
ClCG02G004760 Citrullus lanatus HOM05D004650 ORTHO05D005715 3.6e-13 77.8 54 66.7
Gohir.A13G019000 Gossypium hirsutum HOM05D004650 ORTHO05D005715 3.6e-13 77.8 65 56.9
TWI75G0911 Tripterygium wilfordii HOM05D004650 ORTHO05D005715 3.6e-13 77.8 53 69.8
arahy.Tifrunner.gnm1.ann1.EM89X0 Arachis hypogaea HOM05D004650 ORTHO05D005715 4.7e-13 77.4 55 65.5
CSS0049841 Camellia sinensis var. sinensis HOM05D004650 ORTHO05D005715 4.7e-13 77.4 66 60.6
DCAR_023026 Daucus carota HOM05D004650 ORTHO05D005715 4.7e-13 77.4 65 58.5
Prupe.8G085300 Prunus persica HOM05D004650 ORTHO05D005715 4.7e-13 77.4 53 67.9
Atru.chr5.3088 Acer truncatum HOM05D004650 ORTHO05D005715 6.1e-13 77.0 55 65.5
Glyma.12G236300 Glycine max HOM05D004650 ORTHO05D005715 6.1e-13 77.0 58 65.5
Rhsim11G0181000 Rhododendron simsii HOM05D004650 ORTHO05D005715 6.1e-13 77.0 55 65.5
Hund11840 Selenicereus undatus HOM05D004650 ORTHO05D005715 6.1e-13 77.0 57 66.7
VMungo1127G0931 Vigna mungo HOM05D004650 ORTHO05D005715 6.1e-13 77.0 58 63.8
Glyma.13G201700 Glycine max HOM05D004650 ORTHO05D005715 8.0e-13 76.6 58 65.5
CsaV3_7G000160 Cucumis sativus L. HOM05D004650 ORTHO05D005715 1.4e-12 75.9 58 62.1
Ciclev10027768m.g Citrus clementina HOM05D004650 ORTHO05D005715 1.8e-12 75.5 55 67.3
Oeu005820.1 Olea europaea HOM05D004650 ORTHO05D005715 1.8e-12 75.5 53 64.2
Sabra09G0093300 Salix brachista HOM05D004650 ORTHO05D005715 1.8e-12 75.5 55 65.5
EL10Ac3g05863 Beta vulgaris HOM05D004650 ORTHO05D005715 2.3e-12 75.1 53 66.0
Oeu038840.1 Olea europaea HOM05D004650 ORTHO05D005715 2.3e-12 75.1 41 80.5
arahy.Tifrunner.gnm1.ann1.JDK4IY Arachis hypogaea HOM05D004650 ORTHO05D005715 3.0e-12 74.7 55 63.6
MELO3C013443.2 Cucumis melo HOM05D004650 ORTHO05D005715 3.0e-12 74.7 58 62.1
Gohir.D13G029900 Gossypium hirsutum HOM05D004650 ORTHO05D005715 3.0e-12 74.7 65 55.4
Gorai.013G034200 Gossypium raimondii HOM05D004650 ORTHO05D005715 3.0e-12 74.7 65 55.4
Sed0015033 Sechium edule HOM05D004650 ORTHO05D005715 4.0e-12 74.3 54 63.0
Sc08g0000680 Simmondsia chinensis HOM05D004650 ORTHO05D005715 4.0e-12 74.3 57 63.2
PSO675G4364 Papaver somniferum HOM05D004650 ORTHO05D005715 6.8e-12 73.6 68 55.9
Lj1g0020880 Lotus japonicus HOM05D004650 ORTHO05D005715 8.8e-12 73.2 59 62.7
Solyc01g109990.4 Solanum lycopersicum HOM05D004650 ORTHO05D005715 1.2e-11 72.8 53 64.2
Sopen01g052180 Solanum pennellii HOM05D004650 ORTHO05D005715 1.2e-11 72.8 53 64.2
PGSC0003DMG400030953 Solanum tuberosum HOM05D004650 ORTHO05D005715 1.2e-11 72.8 53 64.2
THA.LOC104806024 Tarenaya hassleriana HOM05D004650 ORTHO05D005715 1.2e-11 72.8 55 58.2
THA.LOC104824808 Tarenaya hassleriana HOM05D004650 ORTHO05D005715 1.2e-11 72.8 55 58.2
THA.LOC104824809 Tarenaya hassleriana HOM05D004650 ORTHO05D005715 1.2e-11 72.8 55 58.2
Lalb_Chr03g0034141 Lupinus albus HOM05D004650 ORTHO05D005715 2.0e-11 72.0 68 55.9
Lalb_Chr19g0132251 Lupinus albus HOM05D004650 ORTHO05D005715 3.4e-11 71.2 58 60.3
Eucgr.I01295 Eucalyptus grandis HOM05D004650 ORTHO05D005715 5.7e-11 70.5 53 66.0
Medtr1g080390 Medicago truncatula HOM05D004650 ORTHO05D005715 5.7e-11 70.5 56 62.5
Nitab4.5_0003234g0030 Nicotiana tabacum HOM05D004650 ORTHO05D005715 5.7e-11 70.5 55 60.0
Nitab4.5_0009512g0020 Nicotiana tabacum HOM05D004650 ORTHO05D005715 5.7e-11 70.5 55 60.0
PGR142G2793 Punica granatum HOM05D004650 ORTHO05D005715 5.7e-11 70.5 59 59.3
ECA236G4812 Erigeron canadensis HOM05D004650 ORTHO05D005715 7.5e-11 70.1 73 52.1
HanXRQChr16g0505091 Helianthus annuus HOM05D004650 ORTHO05D005715 7.5e-11 70.1 52 63.5
Ca_23900_v3 Cicer arietinum L. HOM05D004650 ORTHO05D005715 1.3e-10 69.3 58 58.6
Gohir.A03G197200 Gossypium hirsutum HOM05D004650 ORTHO05D005715 1.3e-10 69.3 42 73.8
Manes.04G086301 Manihot esculenta HOM05D004650 ORTHO05D005715 1.3e-10 69.3 58 56.9
Aqoxy5G01524 Aquilegia oxysepala HOM05D004650 ORTHO05D005715 1.7e-10 68.9 53 54.7
MSTRG.5411 Avicennia marina HOM05D004650 ORTHO05D005715 1.7e-10 68.9 53 62.3
Migut.G00750 Erythranthe guttata HOM05D004650 ORTHO05D005715 2.2e-10 68.6 57 57.9
PSO541G1340 Papaver somniferum HOM05D004650 ORTHO05D005715 2.8e-10 68.2 68 54.4
Peaxi162Scf00016g00358 Petunia axillaris HOM05D004650 ORTHO05D005715 2.8e-10 68.2 55 60.0
Thhalv10023293m.g Eutrema salsugineum HOM05D004650 ORTHO05D005715 3.7e-10 67.8 55 54.5
SalBow3G4209 Salvia bowleyana HOM05D004650 ORTHO05D005715 3.7e-10 67.8 53 60.4
Psat2g040720 Pisum sativum HOM05D004650 ORTHO05D005715 4.8e-10 67.4 60 60.0
Aqoxy4G02770 Aquilegia oxysepala HOM05D004650 ORTHO05D005715 6.3e-10 67.0 40 67.5
Cc02_g17180 Coffea canephora HOM05D004650 ORTHO05D005715 8.3e-10 66.6 59 59.3
HPP92_025472 Vanilla planifolia HOM05D004650 ORTHO05D005715 1.4e-09 65.9 52 55.8
Zm00001eb212720 Zea mays HOM05D004650 ORTHO05D005715 1.8e-09 65.5 72 50.0
MBI03_g33031_MAGBIO Magnolia biondii HOM05D004650 ORTHO05D005715 2.4e-09 65.1 52 57.7
Sp4g00610 Schrenkiella parvula HOM05D004650 ORTHO05D005715 2.4e-09 65.1 55 52.7
Carub.0004s0049 Capsella rubella HOM05D004650 ORTHO05D005715 4.1e-09 64.3 55 52.7
CARHR112350 Cardamine hirsuta HOM05D004650 ORTHO05D005715 4.1e-09 64.3 55 52.7
CDE02G0935 Ceratophyllum demersum HOM05D004650 ORTHO05D005715 4.1e-09 64.3 70 47.1
TPR.G3476 Trifolium pratense HOM05D004650 ORTHO05D005715 4.1e-09 64.3 56 60.7
SGA_v2.0_scaffold122G33210 Striga asiatica HOM05D004650 ORTHO05D005715 5.4e-09 63.9 60 55.0
AT2G21440 Arabidopsis thaliana HOM05D004650 ORTHO05D005715 7.0e-09 63.5 55 50.9
ATR0564G425 Amborella trichopoda HOM05D004650 ORTHO05D005715 9.1e-09 63.2 54 51.9
A04p16150 Brassica napus HOM05D004650 ORTHO05D005715 1.2e-08 62.8 55 54.5
BraA04t17255Z Brassica rapa HOM05D004650 ORTHO05D005715 1.2e-08 62.8 56 53.6
BraA09t41211Z Brassica rapa HOM05D004650 ORTHO05D005715 1.6e-08 62.4 56 53.6
A09p58230 Brassica napus HOM05D004650 ORTHO05D005715 2.0e-08 62.0 53 54.7
BcaC07g41146 Brassica carinata HOM05D004650 ORTHO05D005715 2.7e-08 61.6 53 54.7
C08p41530 Brassica napus HOM05D004650 ORTHO05D005715 2.7e-08 61.6 53 54.7
BolC8t51714H Brassica oleracea HOM05D004650 ORTHO05D005715 2.7e-08 61.6 53 54.7
Lsat_1_v5_gn_7_91680 Lactuca sativa HOM05D004650 ORTHO05D005715 4.5e-08 60.8 57 56.1
BolC4t26659H Brassica oleracea HOM05D004650 ORTHO05D005715 5.9e-08 60.5 56 53.6
Os03g0801800 Oryza sativa ssp. japonica HOM05D004650 ORTHO05D005715 5.9e-08 60.5 36 75.0
C04p50630 Brassica napus HOM05D004650 ORTHO05D005715 1.3e-07 59.3 57 56.1
AL4G10620 Arabidopsis lyrata HOM05D004650 ORTHO05D005715 2.3e-07 58.5 55 45.5
BcaC02g08790 Brassica carinata HOM05D004650 ORTHO05D005715 3.8e-07 57.8 56 55.4


User provided reference genes

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