Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G0876 Fragaria x ananassa HOM05D006647 ORTHO05D008232 3.2e-127 458.4 224 100.0
FvH4_7g00690 Fragaria vesca HOM05D006647 ORTHO05D008232 3.5e-89 332.0 169 94.7
FAN03G0714 Fragaria x ananassa HOM05D006647 ORTHO05D008232 4.5e-89 331.6 169 94.7
FAN01G1843 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.3e-83 313.5 168 92.3
RcHm_v2.0_Chr1g0314911 Rosa chinensis HOM05D006647 ORTHO05D008232 4.6e-73 278.5 172 86.0
Prupe.2G009700 Prunus persica HOM05D006647 ORTHO05D008232 9.8e-68 260.8 171 78.4
MD07G1006600 Malus domestica HOM05D006647 ORTHO05D008232 3.7e-59 232.3 152 78.9
Cfa010738 Carpinus fangiana HOM05D006647 ORTHO05D008232 4.1e-58 228.8 173 69.4
FAN06G3601 Fragaria x ananassa HOM05D006647 ORTHO05D008232 4.1e-58 228.8 116 94.0
FAN10G4164 Fragaria x ananassa HOM05D006647 ORTHO05D008232 4.1e-58 228.8 116 94.0
Dinv09377 Davidia involucrata HOM05D006647 ORTHO05D008232 6.0e-57 224.9 172 69.2
Haze_03236 Corylus avellana HOM05D006647 ORTHO05D008232 1.7e-56 223.4 173 67.6
TAR633G0758 Trochodendron aralioides HOM05D006647 ORTHO05D008232 7.3e-55 218.0 172 67.4
Manes.07G004100 Manihot esculenta HOM05D006647 ORTHO05D008232 2.1e-54 216.5 172 65.7
TWI73G0313 Tripterygium wilfordii HOM05D006647 ORTHO05D008232 2.8e-54 216.1 173 65.3
CiPaw.13G002900 Carya illinoinensis HOM05D006647 ORTHO05D008232 2.4e-53 213.0 173 65.9
Potri.009G064500 Populus trichocarpa HOM05D006647 ORTHO05D008232 1.5e-52 210.3 172 65.7
CSS0029691 Camellia sinensis var. sinensis HOM05D006647 ORTHO05D008232 2.0e-52 209.9 170 65.9
Thhalv10006150m.g Eutrema salsugineum HOM05D006647 ORTHO05D008232 2.0e-52 209.9 170 64.1
GSVIVG01032057001 Vitis vinifera HOM05D006647 ORTHO05D008232 3.4e-52 209.1 169 63.3
CARHR291410 Cardamine hirsuta HOM05D006647 ORTHO05D008232 4.4e-52 208.8 172 62.2
THA.LOC104801981 Tarenaya hassleriana HOM05D006647 ORTHO05D008232 7.6e-52 208.0 164 64.0
Actinidia20680 Actinidia chinensis HOM05D006647 ORTHO05D008232 1.7e-51 206.8 165 65.5
Atru.chr11.2639 Acer truncatum HOM05D006647 ORTHO05D008232 3.8e-51 205.7 189 62.4
AL5G46420 Arabidopsis lyrata HOM05D006647 ORTHO05D008232 3.8e-51 205.7 172 61.0
Carub.0005s3017 Capsella rubella HOM05D006647 ORTHO05D008232 3.8e-51 205.7 172 60.5
Ciclev10032303m.g Citrus clementina HOM05D006647 ORTHO05D008232 3.8e-51 205.7 170 63.5
Lalb_Chr25g0283211 Lupinus albus HOM05D006647 ORTHO05D008232 1.1e-50 204.1 173 61.8
BcaC01g03971 Brassica carinata HOM05D006647 ORTHO05D008232 1.9e-50 203.4 160 65.0
A03p38460 Brassica napus HOM05D006647 ORTHO05D008232 1.9e-50 203.4 160 65.0
C03p46630 Brassica napus HOM05D006647 ORTHO05D008232 1.9e-50 203.4 162 64.2
BraA03t12997Z Brassica rapa HOM05D006647 ORTHO05D008232 1.9e-50 203.4 160 65.0
A03p38500 Brassica napus HOM05D006647 ORTHO05D008232 2.4e-50 203.0 160 65.0
Nn2g15502 Nelumbo nucifera HOM05D006647 ORTHO05D008232 3.2e-50 202.6 185 60.0
TPR.G12287 Trifolium pratense HOM05D006647 ORTHO05D008232 3.2e-50 202.6 176 60.8
arahy.Tifrunner.gnm1.ann1.BH4E67 Arachis hypogaea HOM05D006647 ORTHO05D008232 4.2e-50 202.2 175 62.3
BolC3t16926H Brassica oleracea HOM05D006647 ORTHO05D008232 5.4e-50 201.8 160 64.4
Thecc.01G413900 Theobroma cacao HOM05D006647 ORTHO05D008232 5.4e-50 201.8 175 60.0
arahy.Tifrunner.gnm1.ann1.K7GJAS Arachis hypogaea HOM05D006647 ORTHO05D008232 1.6e-49 200.3 174 62.1
Phvul.005G036700 Phaseolus vulgaris HOM05D006647 ORTHO05D008232 1.6e-49 200.3 172 61.6
Lj5g0023478 Lotus japonicus HOM05D006647 ORTHO05D008232 3.5e-49 199.1 171 61.4
VMungo1080G0119 Vigna mungo HOM05D006647 ORTHO05D008232 4.6e-49 198.7 172 62.2
QL04p005221 Quercus lobata HOM05D006647 ORTHO05D008232 6.0e-49 198.4 183 61.2
Eucgr.G03394 Eucalyptus grandis HOM05D006647 ORTHO05D008232 7.8e-49 198.0 181 61.3
Sp1g00030 Schrenkiella parvula HOM05D006647 ORTHO05D008232 3.0e-48 196.1 172 59.3
Sp5g00020 Schrenkiella parvula HOM05D006647 ORTHO05D008232 3.0e-48 196.1 172 59.3
Rhsim01G0130800 Rhododendron simsii HOM05D006647 ORTHO05D008232 5.1e-48 195.3 176 60.2
Glyma.08G152700 Glycine max HOM05D006647 ORTHO05D008232 6.6e-48 194.9 130 72.3
CsaV3_7G031240 Cucumis sativus L. HOM05D006647 ORTHO05D008232 1.1e-47 194.1 182 58.2
AT5G26880 Arabidopsis thaliana HOM05D006647 ORTHO05D008232 1.9e-47 193.4 173 59.5
Sabra09G0047700 Salix brachista HOM05D006647 ORTHO05D008232 2.5e-47 193.0 165 60.6
Sed0007518 Sechium edule HOM05D006647 ORTHO05D008232 4.3e-47 192.2 182 58.8
Hma1.2p1_0929F.1_g237940 Hydrangea macrophylla HOM05D006647 ORTHO05D008232 5.6e-47 191.8 114 76.3
Psat5g204920 Pisum sativum HOM05D006647 ORTHO05D008232 5.6e-47 191.8 178 57.3
Sc11g0009300 Simmondsia chinensis HOM05D006647 ORTHO05D008232 7.3e-47 191.4 159 65.4
CANSAT01G0516 Cannabis sativa HOM05D006647 ORTHO05D008232 2.1e-46 189.9 134 74.6
DCAR_006301 Daucus carota HOM05D006647 ORTHO05D008232 4.8e-46 188.7 147 66.7
HanXRQChr01g0017301 Helianthus annuus HOM05D006647 ORTHO05D008232 4.8e-46 188.7 179 59.2
Medtr3g027870 Medicago truncatula HOM05D006647 ORTHO05D008232 8.1e-46 188.0 170 57.1
Lj9A629T102 Lonicera japonica HOM05D006647 ORTHO05D008232 3.1e-45 186.0 122 73.0
Duzib138G0958 Durio zibethinus HOM05D006647 ORTHO05D008232 6.9e-45 184.9 171 58.5
PSO339G5555 Papaver somniferum HOM05D006647 ORTHO05D008232 1.2e-44 184.1 165 59.4
MSTRG.5006 Avicennia marina HOM05D006647 ORTHO05D008232 2.0e-44 183.3 178 58.4
Nitab4.5_0011905g0020 Nicotiana tabacum HOM05D006647 ORTHO05D008232 7.6e-44 181.4 170 60.6
Nitab4.5_0001542g0050 Nicotiana tabacum HOM05D006647 ORTHO05D008232 1.3e-43 180.6 169 59.8
ECA248G3327 Erigeron canadensis HOM05D006647 ORTHO05D008232 6.4e-43 178.3 173 59.0
ATR0605G070 Amborella trichopoda HOM05D006647 ORTHO05D008232 1.4e-42 177.2 104 76.0
PSO384G2587 Papaver somniferum HOM05D006647 ORTHO05D008232 1.4e-42 177.2 165 57.6
PGR031G3323 Punica granatum HOM05D006647 ORTHO05D008232 4.2e-42 175.6 156 61.5
HPP92_015763 Vanilla planifolia HOM05D006647 ORTHO05D008232 4.2e-42 175.6 169 56.2
Solyc01g086900.4 Solanum lycopersicum HOM05D006647 ORTHO05D008232 1.2e-41 174.1 171 59.1
Sopen01g033910 Solanum pennellii HOM05D006647 ORTHO05D008232 2.1e-41 173.3 171 59.1
AUR62009372 Chenopodium quinoa HOM05D006647 ORTHO05D008232 4.6e-41 172.2 107 74.8
Oeu010354.1 Olea europaea HOM05D006647 ORTHO05D008232 4.6e-41 172.2 108 75.9
Peaxi162Scf00428g00819 Petunia axillaris HOM05D006647 ORTHO05D008232 4.6e-41 172.2 171 56.7
COL.COLO4_23898 Corchorus olitorius HOM05D006647 ORTHO05D008232 1.3e-40 170.6 100 79.0
Gorai.004G174000 Gossypium raimondii HOM05D006647 ORTHO05D008232 1.3e-40 170.6 150 60.0
Gohir.A08G145600 Gossypium hirsutum HOM05D006647 ORTHO05D008232 1.7e-40 170.2 147 60.5
ClCG09G004320 Citrullus lanatus HOM05D006647 ORTHO05D008232 3.0e-40 169.5 152 57.9
Gohir.D08G166600 Gossypium hirsutum HOM05D006647 ORTHO05D008232 5.1e-40 168.7 147 60.5
CDE06G2349 Ceratophyllum demersum HOM05D006647 ORTHO05D008232 8.7e-40 167.9 106 72.6
MSTRG.5008 Avicennia marina HOM05D006647 ORTHO05D008232 7.4e-39 164.9 148 58.1
EL10Ac2g04310 Beta vulgaris HOM05D006647 ORTHO05D008232 1.6e-38 163.7 131 64.9
MBI01_g36432_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 1.6e-38 163.7 143 60.1
Hund20080 Selenicereus undatus HOM05D006647 ORTHO05D008232 4.8e-38 162.2 180 53.9
Mapoly0078s0003 Marchantia polymorpha HOM05D006647 ORTHO05D008232 1.5e-36 157.1 104 72.1
Zm00001eb034920 Zea mays HOM05D006647 ORTHO05D008232 1.5e-36 157.1 114 69.3
Pp3c8_11960 Physcomitrium patens HOM05D006647 ORTHO05D008232 3.4e-36 156.0 113 65.5
Ca_26823_v3 Cicer arietinum L. HOM05D006647 ORTHO05D008232 1.3e-35 154.1 81 84.0
unitig_0.g1579 Utricularia gibba HOM05D006647 ORTHO05D008232 2.9e-35 152.9 155 54.8
Cc00_g30670 Coffea canephora HOM05D006647 ORTHO05D008232 3.8e-35 152.5 82 84.1
Cpa.g.sc234.13 Carica papaya HOM05D006647 ORTHO05D008232 4.9e-35 152.1 132 60.6
Cc02_g28430 Coffea canephora HOM05D006647 ORTHO05D008232 1.4e-34 150.6 82 81.7
Migut.N01481 Erythranthe guttata HOM05D006647 ORTHO05D008232 5.5e-34 148.7 138 60.1
AagrBONN_evm.TU.Sc2ySwM_362.154 Anthoceros agrestis HOM05D006647 ORTHO05D008232 1.2e-33 147.5 95 71.6
Lsat_1_v5_gn_1_109441 Lactuca sativa HOM05D006647 ORTHO05D008232 1.6e-33 147.1 90 75.6
Migut.O00562 Erythranthe guttata HOM05D006647 ORTHO05D008232 2.1e-33 146.7 92 77.2
SalBow4G2297 Salvia bowleyana HOM05D006647 ORTHO05D008232 7.9e-33 144.8 91 75.8
SGA_v2.0_scaffold4G02252 Striga asiatica HOM05D006647 ORTHO05D008232 1.0e-32 144.4 166 51.8
CBR_g41537 Chara braunii HOM05D006647 ORTHO05D008232 3.9e-32 142.5 85 80.0
Aa31LG10G17450 Aethionema arabicum HOM05D006647 ORTHO05D008232 2.5e-31 139.8 156 48.7
Pp3c23_8130 Physcomitrium patens HOM05D006647 ORTHO05D008232 7.4e-31 138.3 91 69.2
SMO351G0607 Selaginella moellendorffii HOM05D006647 ORTHO05D008232 7.4e-31 138.3 85 74.1
QL04p005246 Quercus lobata HOM05D000030 ORTHO05D008232 7.9e-25 118.2 88 68.2
AUR62023053 Chenopodium quinoa HOM05D006647 ORTHO05D008232 2.3e-24 116.7 88 64.8
vmacro21178 Vaccinium macrocarpon HOM05D006647 ORTHO05D008232 8.7e-24 114.8 66 78.8
MBI04_g14259_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 3.3e-23 112.8 178 43.3
Cre10.g417650 Chlamydomonas reinhardtii HOM05D006647 ORTHO05D008232 7.4e-23 111.7 160 41.9
MCO06G107 Micromonas commoda HOM05D006647 ORTHO05D008232 9.6e-23 111.3 93 60.2
MBI04_g09488_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 5.3e-21 105.5 72 70.8
Os08g0506500 Oryza sativa ssp. japonica HOM05D006647 ORTHO05D008232 1.4e-13 80.9 74 59.5
PRCOL_00005260 Prasinoderma coloniale HOM05D006647 ORTHO05D008232 5.9e-12 75.5 105 40.0
MELO3C023534.2 Cucumis melo HOM05D006647 ORTHO05D008232 7.2e-10 68.6 54 59.3


User provided reference genes

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