Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G0656 Fragaria x ananassa HOM05D007266 ORTHO05D005982 5.6e-234 813.9 413 100.0
FAN06G1886 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.4e-224 782.7 413 97.1
FAN03G0408 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.5e-223 779.2 413 96.4
FAN10G1696 Fragaria x ananassa HOM05D007266 ORTHO05D005982 2.6e-223 778.5 413 96.1
FvH4_7g03880 Fragaria vesca HOM05D007266 ORTHO05D005982 2.9e-222 775.0 413 96.4
RcHm_v2.0_Chr1g0327331 Rosa chinensis HOM05D007266 ORTHO05D005982 1.6e-188 662.9 416 84.6
Prupe.2G043600 Prunus persica HOM05D007266 ORTHO05D005982 1.9e-149 533.1 424 68.4
MD07G1043900 Malus domestica HOM05D007266 ORTHO05D005982 8.0e-140 501.1 424 66.0
FAN03G2213 Fragaria x ananassa HOM05D007266 ORTHO05D005982 2.8e-100 369.8 193 96.9
Cfa010951 Carpinus fangiana HOM05D007266 ORTHO05D005982 3.3e-85 319.7 404 49.3
Haze_02992 Corylus avellana HOM05D007266 ORTHO05D005982 4.2e-80 302.8 419 47.0
Sabra01G0022900 Salix brachista HOM05D007266 ORTHO05D005982 3.0e-78 296.6 387 46.5
CiPaw.14G009500 Carya illinoinensis HOM05D007266 ORTHO05D005982 1.3e-73 281.2 418 43.3
Atru.chr12.1311 Acer truncatum HOM05D007266 ORTHO05D005982 1.2e-71 274.6 389 46.3
Thecc.10G142300 Theobroma cacao HOM05D007266 ORTHO05D005982 5.1e-70 269.2 400 44.5
TWI15G1169 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 5.6e-69 265.8 406 43.3
CiPaw.06G056200 Carya illinoinensis HOM05D007266 ORTHO05D005982 2.1e-68 263.8 405 44.7
Potri.001G031800 Populus trichocarpa HOM05D007266 ORTHO05D005982 7.6e-66 255.4 298 48.3
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 2.7e-63 246.9 386 43.3
Manes.04G156300 Manihot esculenta HOM05D007266 ORTHO05D005982 3.3e-61 240.0 390 42.1
Manes.11G007700 Manihot esculenta HOM05D007266 ORTHO05D005982 8.2e-60 235.3 333 44.7
Actinidia01519 Actinidia chinensis HOM05D007266 ORTHO05D005982 3.1e-59 233.4 382 41.4
COL.COLO4_06637 Corchorus olitorius HOM05D007266 ORTHO05D005982 5.3e-59 232.6 390 41.8
Rhsim01G0124500 Rhododendron simsii HOM05D007266 ORTHO05D005982 2.5e-56 223.8 389 39.6
TAR369G0213 Trochodendron aralioides HOM05D007266 ORTHO05D005982 5.5e-56 222.6 399 41.1
vmacro21145 Vaccinium macrocarpon HOM05D007266 ORTHO05D005982 3.6e-55 219.9 395 39.7
TWI63G1068 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 8.2e-52 208.8 280 47.1
TAR633G1403 Trochodendron aralioides HOM05D007266 ORTHO05D005982 8.2e-52 208.8 392 40.8
TWI38G2050 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 2.6e-50 203.8 384 40.6
Duzib128G0414 Durio zibethinus HOM05D007266 ORTHO05D005982 5.9e-50 202.6 389 39.1
Sabra03G0144500 Salix brachista HOM05D007266 ORTHO05D005982 1.7e-49 201.1 480 34.4
Ca_24011_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 5.0e-49 199.5 333 40.5
Ca_24018_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 5.0e-49 199.5 333 40.5
Glyma.04G133400 Glycine max HOM05D007266 ORTHO05D005982 6.5e-49 199.1 403 37.2
Glyma.13G191900 Glycine max HOM05D007266 ORTHO05D005982 6.5e-49 199.1 393 36.4
GSVIVG01036604001 Vitis vinifera HOM05D007266 ORTHO05D005982 1.6e-47 194.5 297 43.8
Medtr8g040640 Medicago truncatula HOM05D007266 ORTHO05D005982 3.0e-46 190.3 331 38.4
Dinv11235 Davidia involucrata HOM05D007266 ORTHO05D005982 6.7e-46 189.1 395 40.8
TPR.G8521 Trifolium pratense HOM05D007266 ORTHO05D005982 2.6e-45 187.2 336 38.1
Hma1.2p1_0837F.1_g226230 Hydrangea macrophylla HOM05D007266 ORTHO05D005982 5.7e-45 186.0 391 38.4
Phvul.011G200200 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 9.7e-45 185.3 353 37.4
Eucgr.J00068 Eucalyptus grandis HOM05D007266 ORTHO05D005982 1.5e-42 177.9 358 40.5
QL04p021455 Quercus lobata HOM05D007266 ORTHO05D005982 2.6e-42 177.2 228 47.4
QL07p029255 Quercus lobata HOM05D007266 ORTHO05D005982 2.6e-42 177.2 228 47.4
Psat4g144600 Pisum sativum HOM05D007266 ORTHO05D005982 3.4e-42 176.8 334 36.2
Potri.003G193800 Populus trichocarpa HOM05D007266 ORTHO05D005982 4.5e-42 176.4 236 46.6
PGR044G2654 Punica granatum HOM05D007266 ORTHO05D005982 7.7e-42 175.6 372 36.6
Glyma.15G229400 Glycine max HOM05D007266 ORTHO05D005982 1.3e-41 174.9 352 35.8
VMungo1080G1603 Vigna mungo HOM05D007266 ORTHO05D005982 2.2e-41 174.1 353 36.5
VMungo1127G1999 Vigna mungo HOM05D007266 ORTHO05D005982 2.2e-41 174.1 395 33.7
arahy.Tifrunner.gnm1.ann1.5HCQ47 Arachis hypogaea HOM05D007266 ORTHO05D005982 6.5e-41 172.6 435 33.3
arahy.Tifrunner.gnm1.ann1.E0LNSJ Arachis hypogaea HOM05D007266 ORTHO05D005982 6.5e-41 172.6 433 33.7
Phvul.005G018800 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 1.7e-36 157.9 416 32.9
Lj3g0024959 Lotus japonicus HOM05D007266 ORTHO05D005982 2.8e-36 157.1 345 34.5
Gorai.009G299100 Gossypium raimondii HOM05D007266 ORTHO05D005982 3.7e-36 156.8 338 36.7
Gohir.A05G283500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 1.2e-34 151.8 337 36.5
Hund13391 Selenicereus undatus HOM05D007266 ORTHO05D005982 2.0e-34 151.0 418 35.2
Lalb_Chr19g0132921 Lupinus albus HOM05D007266 ORTHO05D005982 4.5e-34 149.8 350 35.4
Ciclev10001901m.g Citrus clementina HOM05D007266 ORTHO05D005982 1.5e-32 144.8 284 38.4
arahy.Tifrunner.gnm1.ann1.IJY9PN Arachis hypogaea HOM05D007266 ORTHO05D005982 9.4e-32 142.1 333 31.5
arahy.Tifrunner.gnm1.ann1.78H5KP Arachis hypogaea HOM05D007266 ORTHO05D005982 2.7e-31 140.6 346 31.5
DCAR_029711 Daucus carota HOM05D007266 ORTHO05D005982 1.8e-30 137.9 388 33.8
Cpa.g.sc169.34 Carica papaya HOM05D007266 ORTHO05D005982 8.8e-30 135.6 422 31.0
Nitab4.5_0002838g0050 Nicotiana tabacum HOM05D007266 ORTHO05D005982 1.5e-29 134.8 354 34.5
Nitab4.5_0004168g0140 Nicotiana tabacum HOM05D007266 ORTHO05D005982 4.4e-29 133.3 354 34.7
Nn7g36823 Nelumbo nucifera HOM05D007266 ORTHO05D005982 2.2e-28 131.0 346 35.3
Oeu058685.1 Olea europaea HOM05D007266 ORTHO05D005982 2.8e-28 130.6 395 33.9
QL04p021458 Quercus lobata HOM05D007266 ORTHO05D005982 4.1e-27 126.7 216 43.5
QL07p029253 Quercus lobata HOM05D007266 ORTHO05D005982 4.1e-27 126.7 216 43.5
Glyma.11G158200 Glycine max HOM05D007266 ORTHO05D005982 5.3e-27 126.3 299 33.8
Dinv32008 Davidia involucrata HOM05D007266 ORTHO05D005982 9.1e-27 125.6 218 41.3
CANSAT56G2989 Cannabis sativa HOM05D007266 ORTHO05D005982 1.2e-26 125.2 397 31.7
CSS0040931 Camellia sinensis var. sinensis HOM05D007266 ORTHO05D005982 1.6e-26 124.8 220 39.5
Lj9C658G11 Lonicera japonica HOM05D007266 ORTHO05D005982 1.6e-26 124.8 255 38.8
THA.LOC104799328 Tarenaya hassleriana HOM05D008873 ORTHO05D005982 1.7e-25 121.3 335 31.6
Oeu013066.1 Olea europaea HOM05D007266 ORTHO05D005982 2.9e-25 120.6 387 31.3
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 3.8e-25 120.2 377 31.6
Lsat_1_v5_gn_1_118261 Lactuca sativa HOM05D007266 ORTHO05D005982 4.2e-24 116.7 279 34.4
PGSC0003DMG402003286 Solanum tuberosum HOM05D007266 ORTHO05D005982 3.6e-23 113.6 355 32.7
Thhalv10021314m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 2.3e-22 110.9 338 31.4
Sopen01g040350 Solanum pennellii HOM05D007266 ORTHO05D005982 3.0e-22 110.5 350 30.6
Lj3g0005568 Lotus japonicus HOM05D007266 ORTHO05D005982 5.2e-22 109.8 273 32.6
EL10Ac2g02761 Beta vulgaris HOM05D007266 ORTHO05D005982 6.8e-22 109.4 393 30.0
Gohir.D05G284500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 4.8e-20 103.2 133 48.9
HanXRQChr05g0146291 Helianthus annuus HOM05D007266 ORTHO05D005982 4.8e-20 103.2 330 30.6
BcaB04g21084 Brassica carinata HOM05D008873 ORTHO05D005982 6.3e-20 102.8 335 29.9
BcaB04g21086 Brassica carinata HOM05D008873 ORTHO05D005982 6.3e-20 102.8 335 29.9
Carub.0003s1168 Capsella rubella HOM05D008873 ORTHO05D005982 8.3e-20 102.4 338 29.3
AUR62031740 Chenopodium quinoa HOM05D007266 ORTHO05D005982 8.3e-20 102.4 410 29.0
Lalb_Chr01g0007431 Lupinus albus HOM05D007266 ORTHO05D005982 2.4e-19 100.9 228 34.2
ECA248G2125 Erigeron canadensis HOM05D007266 ORTHO05D005982 3.1e-19 100.5 274 32.1
A05p37060 Brassica napus HOM05D008873 ORTHO05D005982 4.1e-19 100.1 335 29.9
C05p55490 Brassica napus HOM05D008873 ORTHO05D005982 4.1e-19 100.1 335 29.9
Sc11g0006320 Simmondsia chinensis HOM05D007266 ORTHO05D005982 4.1e-19 100.1 218 35.8
Aa31LG3G6540 Aethionema arabicum HOM05D008873 ORTHO05D005982 9.1e-19 99.0 336 30.7
Sp3g10530 Schrenkiella parvula HOM05D008873 ORTHO05D005982 1.2e-18 98.6 338 29.3
Carub.0006s0591 Capsella rubella HOM05D008873 ORTHO05D005982 1.6e-18 98.2 340 30.9
AL3G23970 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 2.0e-18 97.8 338 28.4
Sp6g35890 Schrenkiella parvula HOM05D008873 ORTHO05D005982 2.7e-18 97.4 342 31.3
AUR62032625 Chenopodium quinoa HOM05D007266 ORTHO05D005982 3.5e-18 97.1 247 35.2
TAR623G0806 Trochodendron aralioides HOM05D007266 ORTHO05D005982 4.5e-18 96.7 149 41.6
BcaC06g32527 Brassica carinata HOM05D008873 ORTHO05D005982 5.9e-18 96.3 344 31.7
C09p69120 Brassica napus HOM05D008873 ORTHO05D005982 5.9e-18 96.3 334 32.0
Thhalv10014291m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 5.9e-18 96.3 342 31.9
MBI13_g09214_MAGBIO Magnolia biondii HOM05D007266 ORTHO05D005982 7.7e-18 95.9 327 27.5
BcaC05g29270 Brassica carinata HOM05D008873 ORTHO05D005982 1.0e-17 95.5 335 29.0
BolC9t59656H Brassica oleracea HOM05D008873 ORTHO05D005982 1.3e-17 95.1 334 32.0
CARHR086860 Cardamine hirsuta HOM05D008873 ORTHO05D005982 2.9e-17 94.0 338 29.6
Ah.10g030010 Amaranthus hybridus HOM05D007266 ORTHO05D005982 8.5e-17 92.4 338 28.1
AL6G17140 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 8.5e-17 92.4 341 30.5
Peaxi162Scf00220g00313 Petunia axillaris HOM05D007266 ORTHO05D005982 8.5e-17 92.4 110 54.5
AT3G12320 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 1.9e-16 91.3 329 28.0
BcaNung04207 Brassica carinata HOM05D008873 ORTHO05D005982 1.6e-15 88.2 337 29.7
BraA03t12914Z Brassica rapa HOM05D008873 ORTHO05D005982 1.6e-15 88.2 338 28.1
HanXRQChr11g0341241 Helianthus annuus HOM05D007266 ORTHO05D005982 2.8e-15 87.4 224 33.0
Migut.B01189 Erythranthe guttata HOM05D007266 ORTHO05D005982 3.6e-15 87.0 396 28.0
Ah.12g065060 Amaranthus hybridus HOM05D007266 ORTHO05D005982 8.0e-15 85.9 338 28.4
A10p28780 Brassica napus HOM05D008873 ORTHO05D005982 8.0e-15 85.9 343 28.9
BraA10t44925Z Brassica rapa HOM05D008873 ORTHO05D005982 8.0e-15 85.9 343 28.9
A03p37600 Brassica napus HOM05D008873 ORTHO05D005982 1.0e-14 85.5 338 29.6
Aqoxy1G00397_Aqoxy1G00398 Aquilegia oxysepala HOM05D007266 ORTHO05D005982 1.4e-14 85.1 351 29.1
BcaC01g04052 Brassica carinata HOM05D008873 ORTHO05D005982 1.8e-14 84.7 338 28.1
C03p45590 Brassica napus HOM05D008873 ORTHO05D005982 1.8e-14 84.7 338 28.1
BolC3t16836H Brassica oleracea HOM05D008873 ORTHO05D005982 1.8e-14 84.7 338 28.1
Lalb_Chr01g0007421 Lupinus albus HOM05D007266 ORTHO05D005982 1.2e-13 82.0 126 41.3
Solyc01g096630.3 Solanum lycopersicum HOM05D007266 ORTHO05D005982 2.0e-13 81.3 104 49.0
BolC5t34215H Brassica oleracea HOM05D008873 ORTHO05D005982 5.7e-13 79.7 334 27.8
BraA05t22503Z Brassica rapa HOM05D008873 ORTHO05D005982 5.7e-13 79.7 250 30.8
BcaB01g05709 Brassica carinata HOM05D008873 ORTHO05D005982 2.2e-12 77.8 344 27.9
PSO384G1467 Papaver somniferum HOM05D007266 ORTHO05D005982 3.7e-12 77.0 258 31.4
AT5G06980 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 1.4e-11 75.1 335 29.6
BcaB04g18684 Brassica carinata HOM05D008873 ORTHO05D005982 9.2e-11 72.4 98 42.9
PSO135G0681 Papaver somniferum HOM05D007266 ORTHO05D005982 7.8e-10 69.3 348 28.4
TAR623G0101 Trochodendron aralioides HOM05D007266 ORTHO05D005982 1.0e-09 68.9 133 36.1
Actinidia01518 Actinidia chinensis HOM05D007266 ORTHO05D005982 1.7e-09 68.2 86 41.9
SalBow5G4193 Salvia bowleyana HOM05D007266 ORTHO05D005982 1.7e-09 68.2 221 28.5
CARHR206160 Cardamine hirsuta HOM05D008873 ORTHO05D005982 2.9e-09 67.4 101 41.6
SGA_v2.0_scaffold124G33643 Striga asiatica HOM05D007266 ORTHO05D005982 8.6e-09 65.9 95 41.1
Oeu026157.1 Olea europaea HOM05D003662 ORTHO05D001824 4.3e-08 63.5 107 40.2
ATR0753G089 Amborella trichopoda HOM05D003662 ORTHO05D001824 1.2e-07 62.0 176 33.5
AagrBONN_evm.TU.Sc2ySwM_344.4535 Anthoceros agrestis HOM05D004414 ORTHO05D001824 1.2e-07 62.0 108 38.0
EL10Ac2g02826 Beta vulgaris HOM05D004414 ORTHO05D001824 1.2e-07 62.0 123 35.8
Gorai.009G296300 Gossypium raimondii HOM05D004414 ORTHO05D001824 1.6e-07 61.6 92 37.0
SHI11361 Sapria himalayana HOM05D000436 ORTHO05D000678 2.1e-07 61.2 309 27.2
CSS0012064 Camellia sinensis var. sinensis HOM05D003662 ORTHO05D001824 3.6e-07 60.5 103 38.8
Gohir.D05G282800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 1.0e-06 58.9 92 34.8
Hund00056 Selenicereus undatus HOM05D003662 ORTHO05D001824 1.0e-06 58.9 95 38.9
TAR633G1473 Trochodendron aralioides HOM05D004414 ORTHO05D001824 1.0e-06 58.9 123 30.9
Aa31sc25G30 Aethionema arabicum HOM05D008873 ORTHO05D005982 1.8e-06 58.2 96 37.5
Gohir.A05G280800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 1.8e-06 58.2 92 34.8
MD07G1036600 Malus domestica HOM05D004414 ORTHO05D001824 1.8e-06 58.2 155 26.5
Hund06389 Selenicereus undatus HOM05D003662 ORTHO05D001824 1.8e-06 58.2 106 35.8
TWI23G0811 Tripterygium wilfordii HOM05D003662 ORTHO05D001824 1.8e-06 58.2 109 35.8
TWI63G0867 Tripterygium wilfordii HOM05D004414 ORTHO05D001824 1.8e-06 58.2 131 27.5
EL10Ac9g21467 Beta vulgaris HOM05D003662 ORTHO05D001824 2.3e-06 57.8 129 36.4
AUR62010118 Chenopodium quinoa HOM05D003662 ORTHO05D001824 3.0e-06 57.4 122 33.6
Duzib248G0964 Durio zibethinus HOM05D003662 ORTHO05D001824 3.0e-06 57.4 103 34.0
Eucgr.J01191 Eucalyptus grandis HOM05D004414 ORTHO05D001824 3.0e-06 57.4 132 28.8
SMO119G0036 Selaginella moellendorffii HOM05D004414 ORTHO05D001824 3.0e-06 57.4 149 34.2
SMO171G0055 Selaginella moellendorffii HOM05D003662 ORTHO05D001824 3.0e-06 57.4 92 38.0
A06p30890 Brassica napus HOM05D003662 ORTHO05D001824 4.0e-06 57.0 103 33.0
BraA06t26028Z Brassica rapa HOM05D003662 ORTHO05D001824 4.0e-06 57.0 103 33.0
Ciclev10027956m.g Citrus clementina HOM05D003662 ORTHO05D001824 4.0e-06 57.0 93 34.4
Gohir.A04G113200 Gossypium hirsutum HOM05D003662 ORTHO05D001824 4.0e-06 57.0 137 29.9
Nn1g05340 Nelumbo nucifera HOM05D003662 ORTHO05D001824 4.0e-06 57.0 224 26.3
CSS0002395 Camellia sinensis var. sinensis HOM05D003662 ORTHO05D001824 5.2e-06 56.6 128 33.6
CSS0028207 Camellia sinensis var. sinensis HOM05D004414 ORTHO05D001824 5.2e-06 56.6 100 36.0
Duzib052G1087 Durio zibethinus HOM05D003662 ORTHO05D001824 5.2e-06 56.6 93 35.5
Mapoly0169s0020 Marchantia polymorpha HOM05D003662 ORTHO05D001824 5.2e-06 56.6 110 40.0
Sed0006995 Sechium edule HOM05D003662 ORTHO05D001824 5.2e-06 56.6 96 35.4
Atru.chr12.1399 Acer truncatum HOM05D004414 ORTHO05D001824 6.8e-06 56.2 134 29.1
CDE04G1684 Ceratophyllum demersum HOM05D003662 ORTHO05D001824 6.8e-06 56.2 162 30.9
Glyma.15G053000 Glycine max HOM05D003662 ORTHO05D001824 6.8e-06 56.2 96 32.3
Mapoly0014s0165 Marchantia polymorpha HOM05D004414 ORTHO05D001824 6.8e-06 56.2 163 31.9
VMungo0540G1102 Vigna mungo HOM05D003662 ORTHO05D001824 6.8e-06 56.2 157 29.3
BcaB02g09780 Brassica carinata HOM05D003662 ORTHO05D001824 8.9e-06 55.8 93 33.3
Eucgr.G00771 Eucalyptus grandis HOM05D003662 ORTHO05D001824 8.9e-06 55.8 111 34.2
Oeu007958.1 Olea europaea HOM05D003662 ORTHO05D001824 8.9e-06 55.8 107 35.5
Peaxi162Scf00220g00314 Petunia axillaris HOM05D007266 ORTHO05D005982 8.9e-06 55.8 202 25.2
TWI14G0069 Tripterygium wilfordii HOM05D003662 ORTHO05D001824 8.9e-06 55.8 93 37.6


User provided reference genes

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