Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G0300 Fragaria x ananassa HOM05D005908 ORTHO05D007235 8.5e-78 293.5 139 100.0
FAN03G3234 Fragaria x ananassa HOM05D005908 ORTHO05D007235 4.7e-52 208.0 107 94.4
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.6e-42 175.6 92 92.4
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 2.2e-33 146.0 105 73.3
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.2e-33 146.0 105 73.3
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.2e-33 146.0 105 73.3
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.9e-33 145.6 105 72.4
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 8.3e-33 144.1 105 72.4
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 2.4e-32 142.5 105 70.5
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.2e-32 142.1 105 71.4
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.1e-31 139.4 105 70.5
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 4.4e-26 121.7 102 61.8
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 1.4e-24 116.7 105 57.1
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 1.1e-21 107.1 103 53.4
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 5.6e-21 104.8 103 53.4
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 9.6e-21 104.0 106 52.8
Haze_13753 Corylus avellana HOM05D005908 ORTHO05D007235 1.6e-20 103.2 106 50.0
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 6.2e-20 101.3 119 47.1
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 1.1e-19 100.5 106 50.9
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 1.4e-19 100.1 103 49.5
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 2.4e-19 99.4 103 51.5
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 2.4e-19 99.4 103 50.5
CSS0026196 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 3.1e-19 99.0 100 51.0
CSS0048064 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 3.1e-19 99.0 100 51.0
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 5.2e-19 98.2 103 49.5
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 6.8e-19 97.8 103 50.5
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 8.9e-19 97.4 104 47.1
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 1.2e-18 97.1 103 47.6
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 2.0e-18 96.3 119 42.9
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 2.0e-18 96.3 104 47.1
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 2.0e-18 96.3 103 48.5
Gohir.A09G040000 Gossypium hirsutum HOM05D005908 ORTHO05D007235 2.6e-18 95.9 106 47.2
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 4.4e-18 95.1 104 47.1
AUR62016029 Chenopodium quinoa HOM05D005908 ORTHO05D007235 9.9e-18 94.0 106 45.3
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 9.9e-18 94.0 103 47.6
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 1.3e-17 93.6 103 46.6
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 1.3e-17 93.6 103 46.6
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 1.7e-17 93.2 124 41.9
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 2.2e-17 92.8 86 57.0
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 2.9e-17 92.4 106 47.2
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 2.9e-17 92.4 103 46.6
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 3.8e-17 92.0 103 45.6
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 3.8e-17 92.0 103 46.6
AUR62021234 Chenopodium quinoa HOM05D005908 ORTHO05D007235 4.9e-17 91.7 106 45.3
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 4.9e-17 91.7 103 46.6
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 4.9e-17 91.7 100 48.0
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 6.4e-17 91.3 103 45.6
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 6.4e-17 91.3 124 40.3
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 1.1e-16 90.5 103 42.7
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 1.4e-16 90.1 100 47.0
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 1.9e-16 89.7 104 45.2
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 1.9e-16 89.7 103 44.7
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 5.4e-16 88.2 104 47.1
MELO3C006877.2 Cucumis melo HOM05D005908 ORTHO05D007235 7.1e-16 87.8 101 44.6
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 7.1e-16 87.8 104 45.2
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 9.3e-16 87.4 103 45.6
Phvul.004G121600 Phaseolus vulgaris HOM05D005908 ORTHO05D007235 9.3e-16 87.4 106 43.4
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 9.3e-16 87.4 106 44.3
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 1.2e-15 87.0 124 37.9
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 1.2e-15 87.0 103 43.7
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 2.1e-15 86.3 89 44.9
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 2.1e-15 86.3 106 42.5
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 3.5e-15 85.5 89 44.9
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 3.5e-15 85.5 87 50.6
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 3.5e-15 85.5 102 44.1
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 4.6e-15 85.1 124 40.3
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 6.0e-15 84.7 102 44.1
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 7.8e-15 84.3 89 44.9
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 7.8e-15 84.3 87 48.3
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 1.0e-14 84.0 103 43.7
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 1.7e-14 83.2 117 39.3
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 1.7e-14 83.2 103 43.7
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 1.7e-14 83.2 103 41.7
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 1.7e-14 83.2 87 47.1
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 2.3e-14 82.8 117 39.3
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 2.3e-14 82.8 103 43.7
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 2.3e-14 82.8 103 41.7
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 3.0e-14 82.4 103 43.7
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 3.9e-14 82.0 89 41.6
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 3.9e-14 82.0 100 41.0
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 3.9e-14 82.0 89 44.9
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 5.1e-14 81.6 89 41.6
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 6.6e-14 81.3 119 37.8
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 8.7e-14 80.9 89 41.6
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 8.7e-14 80.9 89 41.6
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 8.7e-14 80.9 89 41.6
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 1.1e-13 80.5 119 39.5
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 1.1e-13 80.5 103 41.7
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 1.5e-13 80.1 119 36.1
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 1.5e-13 80.1 103 42.7
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 1.9e-13 79.7 106 40.6
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 1.9e-13 79.7 89 40.4
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 1.9e-13 79.7 89 40.4
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 1.9e-13 79.7 89 41.6
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 1.9e-13 79.7 105 42.9
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 2.5e-13 79.3 119 38.7
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 2.5e-13 79.3 103 39.8
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 5.6e-13 78.2 121 38.8
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 7.3e-13 77.8 89 40.4
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 7.3e-13 77.8 89 40.4
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 1.6e-12 76.6 119 36.1
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 2.1e-12 76.3 108 38.9
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 6.2e-12 74.7 87 47.1
vmacro06721 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 8.1e-12 74.3 122 36.9
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 3.1e-11 72.4 72 51.4
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 6.9e-11 71.2 116 32.8
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 9.0e-11 70.9 88 40.9
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 8.4e-09 64.3 91 37.4
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 2.4e-08 62.8 86 34.9
unitig_37.g11958 Utricularia gibba HOM05D005908 ORTHO05D007235 3.5e-07 58.9 103 33.0
Mapoly0051s0108 Marchantia polymorpha HOM05D005908 ORTHO05D007235 4.6e-07 58.5 105 33.3
MD16G1250200 Malus domestica HOM05D005908 ORTHO05D007235 3.0e-06 55.8 45 57.8


User provided reference genes

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