Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G0187 Fragaria x ananassa HOM05D001081 ORTHO05D004708 0.0e+00 2354.7 1180 100.0
FAN06G3553 Fragaria x ananassa HOM05D001081 ORTHO05D004708 0.0e+00 2142.1 1181 92.5
FAN06G1778 Fragaria x ananassa HOM05D001081 ORTHO05D004708 0.0e+00 2138.2 1177 92.5
FvH4_7g31550 Fragaria vesca HOM05D001081 ORTHO05D004708 0.0e+00 2046.2 1500 73.7
RcHm_v2.0_Chr1g0380531 Rosa chinensis HOM05D001081 ORTHO05D004708 0.0e+00 1715.7 1197 73.9
Cfa016233 Carpinus fangiana HOM05D001081 ORTHO05D004708 0.0e+00 1192.9 1161 55.1
CiPaw.06G046000 Carya illinoinensis HOM05D001081 ORTHO05D004708 0.0e+00 1169.5 1104 56.0
QL09p008772 Quercus lobata HOM05D001081 ORTHO05D004708 0.0e+00 1151.7 1169 52.5
Dinv35339 Davidia involucrata HOM05D001081 ORTHO05D004708 0.0e+00 1140.9 975 57.8
Atru.chr12.2203 Acer truncatum HOM05D001081 ORTHO05D004708 0.0e+00 1135.9 982 58.9
TAR375G0280 Trochodendron aralioides HOM05D001081 ORTHO05D004708 0.0e+00 1123.6 1191 51.8
Thecc.03G199500 Theobroma cacao HOM05D001081 ORTHO05D004708 0.0e+00 1104.4 1160 51.8
Ciclev10018477m.g Citrus clementina HOM05D001081 ORTHO05D004708 0.0e+00 1084.7 1160 50.9
CANSAT21G2573 Cannabis sativa HOM05D001081 ORTHO05D004708 3.2e-311 1072.0 989 56.2
CANSAT21G0069 Cannabis sativa HOM05D001081 ORTHO05D004708 2.1e-310 1069.3 991 55.9
Manes.01G183500 Manihot esculenta HOM05D001081 ORTHO05D004708 1.2e-308 1063.5 1194 48.9
Nn1g00260 Nelumbo nucifera HOM05D001081 ORTHO05D004708 2.0e-305 1052.7 1208 48.8
Gorai.007G015700 Gossypium raimondii HOM05D001081 ORTHO05D004708 1.7e-304 1049.7 980 55.2
Gohir.D11G015300 Gossypium hirsutum HOM05D001081 ORTHO05D004708 2.9e-304 1048.9 983 55.0
Gohir.A11G015200 Gossypium hirsutum HOM05D001081 ORTHO05D004708 4.2e-303 1045.0 983 54.9
Prupe.2G309600 Prunus persica HOM05D001081 ORTHO05D004708 6.1e-302 1041.2 756 68.9
vmacro06386 Vaccinium macrocarpon HOM05D001081 ORTHO05D004708 5.9e-297 1024.6 1173 48.4
CSS0032097 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D004708 1.7e-296 1023.1 971 54.9
Rhsim03G0209100 Rhododendron simsii HOM05D001081 ORTHO05D004708 1.9e-295 1019.6 1203 47.5
GSVIVG01038555001 Vitis vinifera HOM05D001081 ORTHO05D004708 4.7e-294 1015.0 1298 45.9
MD07G1288100 Malus domestica HOM05D001081 ORTHO05D004708 4.0e-293 1011.9 751 67.5
MBI06_g13415_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D004708 5.7e-292 1008.1 979 55.2
Lalb_Chr10g0091361 Lupinus albus HOM05D001081 ORTHO05D004708 1.1e-290 1003.8 1133 49.2
Sopen03g022900 Solanum pennellii HOM05D001081 ORTHO05D004708 1.6e-289 1000.0 977 53.2
RcHm_v2.0_Chr1g0381531 Rosa chinensis HOM05D001081 ORTHO05D004708 3.3e-287 992.3 636 78.3
vmacro22638 Vaccinium macrocarpon HOM05D001081 ORTHO05D004708 7.3e-287 991.1 1218 46.7
Nitab4.5_0000548g0110 Nicotiana tabacum HOM05D001081 ORTHO05D004708 1.6e-286 989.9 973 53.3
PSO063G4550 Papaver somniferum HOM05D001081 ORTHO05D004708 4.7e-286 988.4 983 52.1
Actinidia08651 Actinidia chinensis HOM05D001081 ORTHO05D004708 1.5e-284 983.4 1239 45.6
THA.LOC104798901 Tarenaya hassleriana HOM05D001081 ORTHO05D004708 1.3e-275 953.7 1006 50.7
Aqoxy3G00072 Aquilegia oxysepala HOM05D001081 ORTHO05D004708 2.2e-275 953.0 1195 46.3
AUR62019407 Chenopodium quinoa HOM05D001081 ORTHO05D004708 2.7e-273 946.0 1209 45.1
Carub.0006s2205 Capsella rubella HOM05D001081 ORTHO05D004708 5.6e-271 938.3 985 50.4
EL10Ac3g05278 Beta vulgaris HOM05D001081 ORTHO05D004708 8.9e-269 931.0 1018 49.5
Potri.012G016100 Populus trichocarpa HOM05D001081 ORTHO05D004708 2.0e-268 929.9 1037 49.2
AL6G35710 Arabidopsis lyrata HOM05D001081 ORTHO05D004708 1.6e-265 920.2 984 49.5
CARHR189220 Cardamine hirsuta HOM05D001081 ORTHO05D004708 4.6e-265 918.7 987 49.3
Thhalv10003512m.g Eutrema salsugineum HOM05D001081 ORTHO05D004708 8.6e-264 914.4 997 49.3
AT5G24280 Arabidopsis thaliana HOM05D001081 ORTHO05D004708 4.3e-263 912.1 984 48.8
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 5.6e-263 911.8 1110 47.2
Lsat_1_v5_gn_8_5261 Lactuca sativa HOM05D001081 ORTHO05D004708 3.1e-261 906.0 984 49.2
ATR0602G075 Amborella trichopoda HOM05D001081 ORTHO05D004708 8.9e-261 904.4 1163 45.5
BraA06t26428Z Brassica rapa HOM05D001081 ORTHO05D004708 2.6e-260 902.9 988 49.3
C07p43490 Brassica napus HOM05D001081 ORTHO05D004708 1.9e-258 896.7 988 49.1
Lj4g0008522 Lotus japonicus HOM05D001081 ORTHO05D004708 4.2e-258 895.6 980 48.7
Ah.07g205570 Amaranthus hybridus HOM05D001081 ORTHO05D004708 3.0e-256 889.4 1020 47.6
TWI39G0445 Tripterygium wilfordii HOM05D001081 ORTHO05D004708 1.1e-255 887.5 924 50.9
COL.COLO4_16768 Corchorus olitorius HOM05D001081 ORTHO05D004708 1.6e-254 883.6 888 52.9
BolC7t44875H Brassica oleracea HOM05D001081 ORTHO05D004708 1.2e-252 877.5 1019 47.3
Thhalv10003513m.g Eutrema salsugineum HOM05D001081 ORTHO05D004708 5.8e-252 875.2 1010 47.3
C07p43530 Brassica napus HOM05D001081 ORTHO05D004708 1.3e-251 874.0 989 48.3
BolC7t44880H Brassica oleracea HOM05D001081 ORTHO05D004708 1.3e-251 874.0 989 48.3
A06p35020 Brassica napus HOM05D001081 ORTHO05D004708 2.2e-251 873.2 987 47.5
Lj1C1020T7 Lonicera japonica HOM05D001081 ORTHO05D004708 4.2e-250 869.0 1255 42.1
A06p35070 Brassica napus HOM05D001081 ORTHO05D004708 9.3e-250 867.8 1035 46.6
BraA06t26425Z Brassica rapa HOM05D001081 ORTHO05D004708 2.7e-249 866.3 975 47.5
Migut.F00209 Erythranthe guttata HOM05D001081 ORTHO05D004708 2.4e-245 853.2 923 49.0
SalBow4G1120 Salvia bowleyana HOM05D001081 ORTHO05D004708 1.2e-244 850.9 987 47.7
BcaNung01806 Brassica carinata HOM05D001081 ORTHO05D004708 2.4e-242 843.2 998 47.1
Medtr1g008050 Medicago truncatula HOM05D001081 ORTHO05D004708 4.6e-241 839.0 983 47.4
Hund21007 Selenicereus undatus HOM05D001081 ORTHO05D004708 8.7e-240 834.7 988 46.4
Psat6g034720 Pisum sativum HOM05D001081 ORTHO05D004708 1.9e-239 833.6 1181 41.9
BcaNung01219 Brassica carinata HOM05D001081 ORTHO05D004708 8.1e-238 828.2 1000 45.9
CARHR189240 Cardamine hirsuta HOM05D001081 ORTHO05D004708 5.8e-236 822.0 995 45.1
TPR.G12082 Trifolium pratense HOM05D001081 ORTHO05D004708 4.6e-233 812.4 983 45.9
Carub.0006s2203 Capsella rubella HOM05D001081 ORTHO05D004708 8.7e-232 808.1 948 46.1
AUR62006087 Chenopodium quinoa HOM05D001081 ORTHO05D004708 1.9e-226 790.4 1040 43.8
Lj1C1018T17 Lonicera japonica HOM05D001081 ORTHO05D004708 2.1e-225 786.9 1217 39.9
Cpa.g.sc3.89 Carica papaya HOM05D001081 ORTHO05D004708 6.3e-222 775.4 746 51.3
CAN.G481.14 Capsicum annuum HOM05D001081 ORTHO05D004708 1.1e-221 774.6 972 45.1
PSO781G0289 Papaver somniferum HOM05D001081 ORTHO05D004708 3.4e-220 769.6 983 44.4
SGA_v2.0_scaffold192G40538 Striga asiatica HOM05D001081 ORTHO05D004708 1.7e-214 750.7 978 43.1
CARHR189250 Cardamine hirsuta HOM05D001081 ORTHO05D004708 7.2e-210 735.3 925 44.3
Solyc03g083130.3 Solanum lycopersicum HOM05D001081 ORTHO05D004708 6.7e-208 728.8 744 50.1
CANSAT21G1825 Cannabis sativa HOM05D001081 ORTHO05D004708 2.4e-205 720.3 631 58.3
Cc02_g01510 Coffea canephora HOM05D001081 ORTHO05D004708 7.0e-205 718.8 847 47.1
Peaxi162Scf00740g00138 Petunia axillaris HOM05D001081 ORTHO05D004708 5.9e-204 715.7 758 50.1
Glyma.17G128700 Glycine max HOM05D001081 ORTHO05D004708 4.8e-198 696.0 653 55.4
Nitab4.5_0006933g0030 Nicotiana tabacum HOM05D001081 ORTHO05D004708 1.3e-195 688.0 957 41.7
Aa31LG11G3510 Aethionema arabicum HOM05D001081 ORTHO05D004708 1.6e-193 681.0 910 43.6
Oeu041052.4 Olea europaea HOM05D001081 ORTHO05D004708 2.6e-191 673.7 1003 40.2
Sp2g23080 Schrenkiella parvula HOM05D001081 ORTHO05D004708 3.8e-187 659.8 779 45.1
Sabra15G0067900 Salix brachista HOM05D001081 ORTHO05D004708 2.5e-178 630.6 688 52.0
Ca_12793_v3 Cicer arietinum L. HOM05D001081 ORTHO05D004708 3.6e-169 600.1 753 42.8
Sabra12G0016000 Salix brachista HOM05D001081 ORTHO05D004708 1.3e-163 581.6 647 47.8
DCAR_008928 Daucus carota HOM05D001081 ORTHO05D004708 7.3e-162 575.9 1038 36.6
HanXRQChr08g0225341 Helianthus annuus HOM05D001081 ORTHO05D004708 5.2e-160 569.7 545 55.6
Mapoly0076s0015 Marchantia polymorpha HOM05D001081 ORTHO05D004708 7.6e-151 539.3 1039 34.4
HanXRQChr08g0225301 Helianthus annuus HOM05D001081 ORTHO05D004708 8.1e-145 519.2 757 41.3
Eucgr.G00091 Eucalyptus grandis HOM05D001081 ORTHO05D004708 4.0e-144 516.9 530 49.6
HanXRQChr08g0225291 Helianthus annuus HOM05D001081 ORTHO05D004708 4.9e-142 510.0 558 49.6
Mapoly0111s0028 Marchantia polymorpha HOM05D001081 ORTHO05D004708 7.4e-130 469.5 1029 32.0
AagrBONN_evm.TU.Sc2ySwM_117.3719 Anthoceros agrestis HOM05D001081 ORTHO05D004708 2.4e-128 464.5 1102 32.1
Eucgr.G00110 Eucalyptus grandis HOM05D001081 ORTHO05D004708 2.6e-127 461.1 584 43.3
AagrBONN_evm.TU.Sc2ySwM_228.1615 Anthoceros agrestis HOM05D001081 ORTHO05D004708 4.9e-126 456.8 1049 32.9
Eucgr.G00143 Eucalyptus grandis HOM05D001081 ORTHO05D004708 1.6e-124 451.8 411 60.1
Eucgr.H05019 Eucalyptus grandis HOM05D001081 ORTHO05D004708 1.9e-122 444.9 530 44.9
Eucgr.G00111 Eucalyptus grandis HOM05D001081 ORTHO05D004708 1.3e-121 442.2 400 60.5
Medtr1g007950 Medicago truncatula HOM05D001081 ORTHO05D004708 3.1e-120 437.6 408 56.6
Eucgr.H05016 Eucalyptus grandis HOM05D001081 ORTHO05D004708 9.0e-120 436.0 400 59.8
Eucgr.G00092 Eucalyptus grandis HOM05D001081 ORTHO05D004708 8.4e-118 429.5 400 59.5
Sabra11G0071800 Salix brachista HOM05D001060 ORTHO05D004708 8.7e-115 419.5 501 47.3
Hma1.2p1_0404F.1_g145360 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 1.5e-111 408.7 462 46.8
Medtr1g007990 Medicago truncatula HOM05D001081 ORTHO05D004708 1.9e-106 391.7 587 38.5
SMO213G0001 Selaginella moellendorffii HOM05D001081 ORTHO05D004708 2.4e-104 384.8 981 29.9
Aqoxy4G01594 Aquilegia oxysepala HOM05D001081 ORTHO05D004708 2.0e-103 381.7 606 40.1
FAN03G0095 Fragaria x ananassa HOM05D001081 ORTHO05D004708 1.0e-91 342.8 616 41.7
FAN03G2990 Fragaria x ananassa HOM05D001081 ORTHO05D003320 6.5e-86 323.6 274 65.3
Hma1.2p1_0404F.1_g145390 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 2.1e-84 318.5 302 55.0
Sabra15G0068100 Salix brachista HOM05D001081 ORTHO05D004708 1.0e-78 299.7 209 73.2
Hma1.2p1_0404F.1_g145350 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 9.4e-77 293.1 240 61.2
Eucgr.K00385 Eucalyptus grandis HOM05D001081 ORTHO05D004708 2.8e-73 281.6 322 44.4
FvH4_7g32260 Fragaria vesca HOM05D001081 ORTHO05D003320 4.1e-72 277.7 227 64.8
Ca_12791_v3 Cicer arietinum L. HOM05D001081 ORTHO05D004708 7.0e-72 276.9 217 65.9
ECA233G5228 Erigeron canadensis HOM05D001081 ORTHO05D004708 7.7e-71 273.5 433 37.4
Pp3c8_21182 Physcomitrium patens HOM05D001081 ORTHO05D004708 4.0e-67 261.2 1021 27.5
Hma1.2p1_0404F.1_g145340 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 2.0e-66 258.8 180 71.7
HanXRQChr08g0225331 Helianthus annuus HOM05D001081 ORTHO05D004708 4.9e-65 254.2 364 38.7
Thecc.03G196700 Theobroma cacao HOM05D001081 ORTHO05D004708 1.1e-64 253.1 489 37.2
BcaNung01800 Brassica carinata HOM05D001081 ORTHO05D004708 4.5e-63 247.7 327 43.7
Pp3c8_21170 Physcomitrium patens HOM05D001081 ORTHO05D004708 1.7e-62 245.7 910 27.4
HanXRQChr10g0291811 Helianthus annuus HOM05D001081 ORTHO05D004708 1.6e-60 239.2 181 67.4
Cpa.g.sc3.91 Carica papaya HOM05D001081 ORTHO05D004708 8.0e-60 236.9 189 66.7
DCAR_008935 Daucus carota HOM05D001081 ORTHO05D004708 3.0e-59 235.0 785 26.0
SGA_v2.0_scaffold9G04846 Striga asiatica HOM05D001081 ORTHO05D004708 1.4e-56 226.1 187 63.6
AL6G35700 Arabidopsis lyrata HOM05D001081 ORTHO05D004708 1.6e-55 222.6 319 38.2
PSO170G6091 Papaver somniferum HOM05D001081 ORTHO05D004708 6.0e-47 194.1 214 47.7
Gohir.D11G256700 Gossypium hirsutum HOM05D001081 ORTHO05D010708 5.0e-46 191.0 143 67.1
Gorai.010G233200 Gossypium raimondii HOM05D001081 ORTHO05D010708 9.5e-45 186.8 142 67.6
Aqoxy4G01595 Aquilegia oxysepala HOM05D001081 ORTHO05D004708 3.1e-43 181.8 252 39.3
TWI39G0245 Tripterygium wilfordii HOM05D001081 ORTHO05D004708 1.1e-40 173.3 119 71.4
Hma1.2p1_0404F.1_g145380 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 2.6e-34 152.1 102 73.5
HanXRQChr08g0225271 Helianthus annuus HOM05D001081 ORTHO05D003320 1.4e-32 146.4 213 39.0
FAN01G2325 Fragaria x ananassa HOM05D001081 ORTHO05D004708 2.1e-31 142.5 99 73.7
FvH4_7g31511 Fragaria vesca HOM05D001081 ORTHO05D004708 2.7e-31 142.1 68 98.5
HanXRQChr08g0225281 Helianthus annuus HOM05D001081 ORTHO05D004708 3.3e-29 135.2 166 44.0
FAN10G3430 Fragaria x ananassa HOM05D001081 ORTHO05D003320 4.3e-29 134.8 79 94.9
Gorai.011G131700 Gossypium raimondii HOM05D001081 ORTHO05D004708 2.8e-28 132.1 107 62.6
AT5G24275 Arabidopsis thaliana HOM05D001081 ORTHO05D004708 3.6e-28 131.7 134 50.7
FAN10G0061 Fragaria x ananassa HOM05D001081 ORTHO05D003320 1.4e-27 129.8 76 94.7
FAN10G4108 Fragaria x ananassa HOM05D001081 ORTHO05D003320 1.4e-27 129.8 76 94.7
Thecc.03G196800 Theobroma cacao HOM05D001081 ORTHO05D029834 6.9e-27 127.5 201 37.3
SEGI_17438 Sequoiadendron giganteum HOM05D001081 ORTHO05D004708 4.2e-24 118.2 201 35.3
Sopen03g022930 Solanum pennellii HOM05D001081 ORTHO05D004708 2.7e-23 115.5 136 48.5
Nitab4.5_0006933g0040 Nicotiana tabacum HOM05D001081 ORTHO05D004708 4.6e-23 114.8 77 74.0
Pp3c22_17800 Physcomitrium patens HOM05D001081 ORTHO05D003320 1.7e-22 112.8 494 24.7
Sopen03g022620 Solanum pennellii HOM05D001081 ORTHO05D004708 5.1e-22 111.3 83 65.1
QL09p008909 Quercus lobata HOM05D001081 ORTHO05D004708 4.3e-21 108.2 315 29.8
SEGI_37251 Sequoiadendron giganteum HOM05D001081 ORTHO05D004708 4.3e-21 108.2 118 54.2
Actinidia04725 Actinidia chinensis HOM05D001081 ORTHO05D004708 8.1e-20 104.0 71 70.4
Duzib205G2059 Durio zibethinus HOM05D001081 ORTHO05D004708 1.8e-19 102.8 124 47.6
BcaB01g02574 Brassica carinata HOM05D001081 ORTHO05D004708 4.0e-19 101.7 115 42.6
SEGI_22535 Sequoiadendron giganteum HOM05D001081 ORTHO05D004708 9.0e-19 100.5 98 48.0
Actinidia27675 Actinidia chinensis HOM05D001081 ORTHO05D004708 5.8e-18 97.8 71 67.6
Sabra11G0071600 Salix brachista HOM05D001081 ORTHO05D004708 2.4e-16 92.4 100 49.0
Pp3c22_17807 Physcomitrium patens HOM05D001081 ORTHO05D004708 3.2e-16 92.0 87 50.6
SEGI_00308 Sequoiadendron giganteum HOM05D001081 ORTHO05D006714 1.6e-15 89.7 184 28.8
Sopen03g019380 Solanum pennellii HOM05D001081 ORTHO05D029255 2.1e-15 89.4 128 43.8
Lsat_1_v5_gn_9_3381 Lactuca sativa HOM05D001081 ORTHO05D004708 6.0e-15 87.8 77 61.0
Solyc03g083190.3 Solanum lycopersicum HOM05D001081 ORTHO05D004708 1.3e-14 86.7 146 41.8
Peaxi162Scf00740g00140 Petunia axillaris HOM05D001081 ORTHO05D024756 1.1e-13 83.6 49 79.6
Gohir.D01G098375 Gossypium hirsutum HOM05D001081 ORTHO05D029834 1.9e-13 82.8 66 59.1
Gorai.002G175000 Gossypium raimondii HOM05D001081 ORTHO05D029834 3.3e-13 82.0 66 57.6
Lsat_1_v5_gn_8_60400 Lactuca sativa HOM05D001081 ORTHO05D001168 4.3e-13 81.6 113 38.9
Lsat_1_v5_gn_0_23101 Lactuca sativa HOM05D001081 ORTHO05D013496 7.4e-13 80.9 116 38.8
Actinidia04689 Actinidia chinensis HOM05D001081 ORTHO05D004708 3.7e-12 78.6 59 66.1
Hma1.2p1_0013F.1_g008960 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 6.2e-12 77.8 47 76.6
EL10Ac1g00254 Beta vulgaris HOM05D001081 ORTHO05D000320 2.0e-10 72.8 150 30.7
Gohir.D01G141951 Gossypium hirsutum HOM05D001081 ORTHO05D029834 2.0e-10 72.8 54 63.0
SEGI_15117 Sequoiadendron giganteum HOM05D001081 ORTHO05D004708 4.5e-10 71.6 50 66.0
Carub.0006s2204 Capsella rubella HOM05D001081 ORTHO05D024756 5.8e-10 71.2 47 66.0
Sopen03g022910 Solanum pennellii HOM05D001081 ORTHO05D004708 9.9e-10 70.5 115 39.1
Solyc03g083120.3 Solanum lycopersicum HOM05D001081 ORTHO05D024756 1.1e-08 67.0 44 70.5
Lsat_1_v5_gn_6_63561 Lactuca sativa HOM05D001081 ORTHO05D004708 3.5e-07 62.0 57 57.9
Sopen03g022630 Solanum pennellii HOM05D001081 ORTHO05D003320 1.3e-06 60.1 60 50.0
Migut.F00208 Erythranthe guttata HOM05D001081 ORTHO05D004708 2.3e-06 59.3 31 83.9
AUR62000987 Chenopodium quinoa HOM05D001081 ORTHO05D004708 6.7e-06 57.8 89 42.7


User provided reference genes

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