Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1986.5 1031 100.0
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1943.3 1031 98.2
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1934.8 1035 96.7
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1930.6 1031 97.6
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1886.7 1031 95.0
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1858.2 1035 92.9
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1664.4 1038 83.0
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1662.9 1031 82.8
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1600.1 981 83.5
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1572.0 1037 78.9
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1563.5 1010 79.0
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1551.6 1048 77.0
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1548.9 1036 76.7
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1545.4 1038 77.3
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1542.7 1012 78.8
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1537.7 1038 76.1
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1537.7 1029 76.8
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1526.5 1042 76.2
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1525.8 1045 76.1
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1519.6 1045 75.9
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1513.4 1029 74.8
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1510.7 1028 75.8
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1510.7 1006 76.9
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1501.1 1012 76.3
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1500.7 1005 76.0
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1500.0 1042 74.9
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1498.0 1042 75.7
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1496.1 1005 75.5
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1486.9 1026 74.9
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1482.2 1012 75.2
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1481.1 1046 73.8
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1479.9 1057 73.7
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1479.2 1086 72.6
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1476.5 1040 73.9
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1474.5 1063 72.5
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1474.5 1019 75.6
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1471.8 1011 75.5
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1470.7 1045 73.5
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1470.3 1043 73.9
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1469.9 1010 75.0
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1469.5 1036 74.3
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1469.1 1012 74.8
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1468.8 1049 73.3
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1464.9 1017 75.4
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1457.6 1014 74.6
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1454.1 1039 72.6
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1445.3 1012 73.5
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1444.9 1077 71.5
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1443.3 1020 74.6
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1439.1 1022 74.0
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1439.1 1055 72.3
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1435.2 1020 74.5
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1434.1 992 74.2
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1433.3 1016 73.6
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1432.5 1020 74.4
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1428.3 1019 73.8
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1427.2 1012 72.8
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1425.2 1011 74.9
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1424.5 1026 73.4
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1421.8 1015 74.1
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1419.1 1019 72.6
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1419.1 1019 72.6
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1413.7 1012 72.5
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1411.7 1013 72.3
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1411.4 1042 71.7
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1409.8 1012 72.3
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1408.7 1014 72.6
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1397.5 1010 72.2
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1396.7 1021 73.0
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1395.2 1000 72.8
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1395.2 1014 72.3
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1389.4 1009 71.6
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1389.4 1042 69.5
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1386.3 1015 70.9
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1381.7 1022 71.2
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1379.0 1012 71.0
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1379.0 919 76.2
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1375.9 1023 70.5
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1373.2 1001 71.1
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1372.8 1023 70.3
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1368.6 1067 69.6
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1366.7 1025 71.0
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1365.9 1010 71.7
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1361.3 1012 70.8
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1360.5 1078 67.3
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1357.8 1010 69.8
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1353.6 887 78.6
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1352.8 1020 70.5
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1348.6 1043 67.8
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1346.6 1007 70.5
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1345.9 1017 70.4
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1343.9 1013 70.8
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1343.6 1038 67.8
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1339.7 886 78.8
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1337.4 1013 70.4
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1336.2 1012 69.9
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1336.2 1012 70.3
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1330.1 1013 70.0
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1329.3 1014 68.6
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1328.9 1022 69.4
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1328.9 1022 69.4
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1328.5 1022 69.3
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1320.1 1019 68.6
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1313.5 989 69.9
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1309.7 920 75.3
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1296.6 1037 66.4
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1295.4 1012 67.8
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1293.1 1012 67.7
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1292.7 1014 68.0
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1289.6 992 68.9
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1289.2 1019 67.7
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1288.9 1020 66.5
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1285.0 1020 67.5
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1279.2 1011 67.5
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1276.5 1010 67.1
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1268.1 999 67.0
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1265.4 1029 65.9
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1202.2 1017 63.0
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1201.8 1001 64.6
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1184.9 928 67.7
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1184.9 1026 63.6
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1173.3 1042 61.6
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1170.2 1034 62.3
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1167.9 1025 63.5
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1132.5 988 62.3
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1131.3 1011 60.1
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1130.5 851 68.7
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1104.7 1063 59.0
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 6.5e-300 1034.2 995 58.6
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.8e-295 1018.8 884 60.5
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 5.4e-294 1014.6 1052 57.2
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.0e-281 973.8 801 67.4
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 4.3e-275 951.8 834 61.5
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 8.9e-265 917.5 987 53.1
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 1.7e-263 913.3 714 69.5
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 8.3e-263 911.0 736 69.0
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 1.4e-249 867.1 1010 49.8
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.3e-242 844.0 981 49.6
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 6.0e-237 825.1 985 48.1
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 7.9e-237 824.7 983 49.0
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 1.3e-228 797.3 836 52.8
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 1.1e-222 777.7 811 53.6
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 2.8e-210 736.5 715 62.0
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 4.4e-195 686.0 909 44.9
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 4.4e-195 686.0 660 57.0
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 7.0e-185 652.1 831 50.4
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 4.0e-172 609.8 630 55.2
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 3.4e-171 606.7 964 39.6
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.7e-159 567.8 622 53.5
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 4.7e-157 559.7 666 52.1
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.6e-149 533.5 636 49.5
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 4.4e-147 526.6 1163 33.8
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 7.3e-126 456.1 422 57.3
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 2.4e-121 441.0 637 45.2
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 1.8e-119 434.9 555 48.1
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 7.9e-112 409.5 276 79.3
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.3e-98 365.5 236 81.4
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.7e-85 322.0 317 56.2
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 1.5e-81 308.9 268 64.6
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 6.1e-72 276.9 621 35.1
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 7.0e-68 263.5 281 56.2
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 5.7e-54 217.2 207 54.1
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 8.3e-53 213.4 702 27.4
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.5e-49 201.8 176 56.2
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 4.3e-49 201.1 158 63.9
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 9.5e-49 199.9 913 23.8
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 1.4e-47 196.1 156 64.1
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 5.2e-39 167.5 222 40.1
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 1.9e-36 159.1 186 51.1
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 7.8e-35 153.7 134 56.7
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 7.1e-28 130.6 130 51.5
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.2e-22 113.2 114 50.9
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 3.5e-19 101.7 95 53.7
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 3.5e-19 101.7 95 53.7
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 9.0e-15 87.0 85 61.2
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 7.6e-14 84.0 60 71.7
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 1.2e-11 76.6 66 54.5


User provided reference genes

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