Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L03636 Eucalyptus grandis HOM05D003097 ORTHO05D003437 5.0e-112 407.9 224 100.0
Eucgr.E02120 Eucalyptus grandis HOM05D003097 ORTHO05D003437 3.7e-107 391.7 224 96.9
Eucgr.E03686 Eucalyptus grandis HOM05D003097 ORTHO05D003437 3.7e-107 391.7 224 95.5
Eucgr.A02944 Eucalyptus grandis HOM05D003097 ORTHO05D003437 8.3e-99 364.0 207 95.2
Eucgr.C02076 Eucalyptus grandis HOM05D003097 ORTHO05D003437 1.1e-95 353.6 224 90.2
Eucgr.L03550 Eucalyptus grandis HOM05D003097 ORTHO05D003437 5.9e-89 331.3 192 96.9
Eucgr.C01360 Eucalyptus grandis HOM05D003097 ORTHO05D003437 6.4e-67 258.1 144 93.8
Eucgr.F04044 Eucalyptus grandis HOM05D003097 ORTHO05D003437 2.3e-61 239.6 144 93.1
Eucgr.I02346 Eucalyptus grandis HOM05D003097 ORTHO05D003437 2.0e-52 209.9 146 88.4
Dinv40090 Davidia involucrata HOM05D003097 ORTHO05D003437 3.3e-39 166.0 145 60.0
ClCG01G020320 Citrullus lanatus HOM05D003097 ORTHO05D003437 5.6e-39 165.2 146 65.8
GSVIVG01018777001 Vitis vinifera HOM05D003097 ORTHO05D003437 9.6e-39 164.5 146 66.4
CsaV3_6G047120 Cucumis sativus L. HOM05D003097 ORTHO05D003437 2.1e-38 163.3 145 65.5
TWI53G0815 Tripterygium wilfordii HOM05D003097 ORTHO05D003437 2.1e-38 163.3 147 58.5
MELO3C007905.2 Cucumis melo HOM05D003097 ORTHO05D003437 2.8e-38 162.9 146 64.4
QL06p032886 Quercus lobata HOM05D003097 ORTHO05D003437 3.6e-38 162.5 145 61.4
Manes.01G145900 Manihot esculenta HOM05D003097 ORTHO05D003437 6.2e-38 161.8 146 61.0
CiPaw.08G131400 Carya illinoinensis HOM05D003097 ORTHO05D003437 1.1e-37 161.0 147 59.2
Haze_03760 Corylus avellana HOM05D005767 ORTHO05D006785 1.8e-37 160.2 151 58.9
MD02G1132000 Malus domestica HOM05D003097 ORTHO05D003437 3.1e-37 159.5 146 58.2
CiPaw.07G058800 Carya illinoinensis HOM05D003097 ORTHO05D003437 6.9e-37 158.3 149 62.4
PGR119G0495 Punica granatum HOM05D003097 ORTHO05D003437 6.9e-37 158.3 164 53.7
Cfa006975 Carpinus fangiana HOM05D003097 ORTHO05D003437 2.6e-36 156.4 152 55.9
Sed0015691 Sechium edule HOM05D003097 ORTHO05D003437 4.9e-35 152.1 146 63.0
Dinv33630 Davidia involucrata HOM05D003097 ORTHO05D003437 6.4e-35 151.8 146 52.7
Atru.chr3.803 Acer truncatum HOM05D003097 ORTHO05D003437 8.4e-35 151.4 148 55.4
Prupe.7G168500 Prunus persica HOM05D003097 ORTHO05D003437 1.9e-34 150.2 143 56.6
Nn5g29092 Nelumbo nucifera HOM05D003097 ORTHO05D003437 2.4e-34 149.8 155 54.8
FvH4_1g11770 Fragaria vesca HOM05D003097 ORTHO05D003437 7.1e-34 148.3 148 54.1
FAN19G0902 Fragaria x ananassa HOM05D003097 ORTHO05D003437 6.0e-33 145.2 148 53.4
FAN28G2069 Fragaria x ananassa HOM05D003097 ORTHO05D003437 6.0e-33 145.2 148 52.7
FAN23G2650 Fragaria x ananassa HOM05D003097 ORTHO05D003437 1.0e-32 144.4 148 53.4
Thecc.01G018200 Theobroma cacao HOM05D003097 ORTHO05D003437 1.3e-32 144.1 142 53.5
FAN26G3019 Fragaria x ananassa HOM05D003097 ORTHO05D003437 3.0e-32 142.9 148 52.7
Potri.005G113400 Populus trichocarpa HOM05D003097 ORTHO05D003437 6.7e-32 141.7 142 60.6
Rhsim10G0211800 Rhododendron simsii HOM05D003097 ORTHO05D003437 7.4e-31 138.3 146 52.7
RcHm_v2.0_Chr2g0099391 Rosa chinensis HOM05D003097 ORTHO05D003437 9.6e-31 137.9 148 51.4
vmacro22134 Vaccinium macrocarpon HOM05D003097 ORTHO05D003437 2.1e-30 136.7 146 50.7
Sc03g0003590 Simmondsia chinensis HOM05D003097 ORTHO05D003437 4.8e-30 135.6 144 51.4
TAR628G1174 Trochodendron aralioides HOM05D003097 ORTHO05D003437 1.5e-28 130.6 154 54.5
Hma1.2p1_1385F.1_g279750 Hydrangea macrophylla HOM05D003097 ORTHO05D003437 2.0e-28 130.2 154 49.4
Duzib187G0417 Durio zibethinus HOM05D003097 ORTHO05D003437 4.5e-28 129.0 163 46.0
VMungo1215G2525 Vigna mungo HOM05D003097 ORTHO05D003437 1.3e-27 127.5 157 54.1
Hma1.2p1_0956F.1_g241270 Hydrangea macrophylla HOM05D003097 ORTHO05D003437 2.2e-27 126.7 146 49.3
Actinidia22974 Actinidia chinensis HOM05D003097 ORTHO05D003437 6.5e-27 125.2 148 49.3
Glyma.07G171600 Glycine max HOM05D003097 ORTHO05D003437 6.5e-27 125.2 143 48.3
COL.COLO4_21904 Corchorus olitorius HOM05D003097 ORTHO05D003437 8.4e-27 124.8 146 45.9
Actinidia17442 Actinidia chinensis HOM05D003097 ORTHO05D003437 1.4e-26 124.0 147 49.0
Medtr4g075480 Medicago truncatula HOM05D003097 ORTHO05D003437 3.2e-26 122.9 152 55.9
Hund14046 Selenicereus undatus HOM05D003097 ORTHO05D003437 3.2e-26 122.9 145 48.3
CSS0021352 Camellia sinensis var. sinensis HOM05D003097 ORTHO05D003437 7.1e-26 121.7 148 48.0
CANSAT01G2970 Cannabis sativa HOM05D003097 ORTHO05D003437 1.6e-25 120.6 136 50.7
Phvul.003G016700 Phaseolus vulgaris HOM05D003097 ORTHO05D003437 1.6e-25 120.6 158 51.3
Potri.009G129600 Populus trichocarpa HOM05D003097 ORTHO05D003437 1.6e-25 120.6 154 51.9
AUR62029468 Chenopodium quinoa HOM05D003097 ORTHO05D003437 2.1e-25 120.2 145 48.3
MBI09_g12954_MAGBIO Magnolia biondii HOM05D003097 ORTHO05D003437 2.1e-25 120.2 155 52.3
TAR376G0456 Trochodendron aralioides HOM05D003097 ORTHO05D003437 2.7e-25 119.8 148 54.1
Ca_19000_v3 Cicer arietinum L. HOM05D003097 ORTHO05D003437 3.5e-25 119.4 152 57.2
TPR.G17152 Trifolium pratense HOM05D003097 ORTHO05D003437 3.5e-25 119.4 152 53.3
Ca_12533_v3 Cicer arietinum L. HOM05D000822 ORTHO05D002021 3.9e-24 115.9 139 51.8
DCAR_022957 Daucus carota HOM05D003097 ORTHO05D003437 3.9e-24 115.9 150 49.3
Sed0000450 Sechium edule HOM05D003097 ORTHO05D003437 3.9e-24 115.9 136 58.1
Sabra09G0099100 Salix brachista HOM05D003097 ORTHO05D003437 5.1e-24 115.5 154 46.1
Duzib248G0851 Durio zibethinus HOM05D003097 ORTHO05D003437 6.7e-24 115.2 153 47.7
SalBow3G2226 Salvia bowleyana HOM05D003097 ORTHO05D003437 6.7e-24 115.2 154 48.1
Atru.chr5.3226 Acer truncatum HOM05D003097 ORTHO05D003437 1.1e-23 114.4 155 43.9
CSS0015165 Camellia sinensis var. sinensis HOM05D003097 ORTHO05D003437 1.1e-23 114.4 154 48.7
PSO541G5166 Papaver somniferum HOM05D003097 ORTHO05D003437 1.5e-23 114.0 155 49.7
Lj3g0016767 Lotus japonicus HOM05D003097 ORTHO05D003437 1.9e-23 113.6 152 46.7
PSO675G5479 Papaver somniferum HOM05D003097 ORTHO05D003437 1.9e-23 113.6 153 50.3
arahy.Tifrunner.gnm1.ann1.4V5YZV Arachis hypogaea HOM05D003097 ORTHO05D003437 2.5e-23 113.2 147 52.4
arahy.Tifrunner.gnm1.ann1.SH99DR Arachis hypogaea HOM05D003097 ORTHO05D003437 2.5e-23 113.2 147 52.4
Thecc.02G067000 Theobroma cacao HOM05D003097 ORTHO05D003437 3.3e-23 112.8 154 46.8
Aqoxy6G02341 Aquilegia oxysepala HOM05D003097 ORTHO05D003437 4.3e-23 112.5 138 47.1
Gohir.A02G170900 Gossypium hirsutum HOM05D003097 ORTHO05D003437 5.7e-23 112.1 141 47.5
Actinidia32084 Actinidia chinensis HOM05D003097 ORTHO05D003437 7.4e-23 111.7 161 50.3
Gorai.007G194400 Gossypium raimondii HOM05D003097 ORTHO05D003437 7.4e-23 111.7 158 40.5
Nitab4.5_0000283g0080 Nicotiana tabacum HOM05D003097 ORTHO05D003437 7.4e-23 111.7 150 49.3
Gohir.D11G182600 Gossypium hirsutum HOM05D003097 ORTHO05D003437 1.3e-22 110.9 158 40.5
Lj2A468T74 Lonicera japonica HOM05D003097 ORTHO05D003437 1.3e-22 110.9 151 44.4
QL11p047530 Quercus lobata HOM05D003097 ORTHO05D003437 1.3e-22 110.9 151 45.0
Gorai.003G009400 Gossypium raimondii HOM05D003097 ORTHO05D003437 1.6e-22 110.5 140 48.6
Nitab4.5_0007006g0010 Nicotiana tabacum HOM05D003097 ORTHO05D003437 1.6e-22 110.5 153 44.4
Potri.004G168100 Populus trichocarpa HOM05D003097 ORTHO05D003437 1.6e-22 110.5 150 45.3
Cpa.g.sc17.155 Carica papaya HOM05D003097 ORTHO05D003437 2.1e-22 110.2 154 55.2
Gohir.A03G203100 Gossypium hirsutum HOM05D003097 ORTHO05D003437 2.8e-22 109.8 154 46.1
Gohir.D02G224400 Gossypium hirsutum HOM05D003097 ORTHO05D003437 2.8e-22 109.8 154 46.1
Manes.05G200500 Manihot esculenta HOM05D003097 ORTHO05D003437 2.8e-22 109.8 154 44.2
Haze_02198 Corylus avellana HOM05D003097 ORTHO05D003437 3.7e-22 109.4 146 52.7
Psat6g051600 Pisum sativum HOM05D003097 ORTHO05D003437 3.7e-22 109.4 139 53.2
RcHm_v2.0_Chr6g0245181 Rosa chinensis HOM05D003097 ORTHO05D003437 3.7e-22 109.4 154 46.1
arahy.Tifrunner.gnm1.ann1.4M6RGX Arachis hypogaea HOM05D003097 ORTHO05D003437 4.8e-22 109.0 155 47.1
arahy.Tifrunner.gnm1.ann1.WD5AW4 Arachis hypogaea HOM05D003097 ORTHO05D003437 4.8e-22 109.0 155 47.1
Nitab4.5_0000980g0160 Nicotiana tabacum HOM05D003097 ORTHO05D003437 4.8e-22 109.0 150 48.7
Gohir.A11G175100 Gossypium hirsutum HOM05D003097 ORTHO05D003437 6.3e-22 108.6 144 42.4
vmacro17382 Vaccinium macrocarpon HOM05D003097 ORTHO05D003437 6.3e-22 108.6 150 50.0
Cfa005183 Carpinus fangiana HOM05D003097 ORTHO05D003437 8.2e-22 108.2 146 47.9
MSTRG.27673 Avicennia marina HOM05D003097 ORTHO05D003437 1.1e-21 107.8 154 44.8
Psat7g178360 Pisum sativum HOM05D003097 ORTHO05D003437 1.1e-21 107.8 153 52.3
Phvul.011G178100 Phaseolus vulgaris HOM05D003097 ORTHO05D003437 1.4e-21 107.5 150 48.0
Gorai.005G252200 Gossypium raimondii HOM05D003097 ORTHO05D003437 2.4e-21 106.7 154 44.8
VMungo1127G0811 Vigna mungo HOM05D003097 ORTHO05D003437 2.4e-21 106.7 152 47.4
Prupe.8G160700 Prunus persica HOM05D003097 ORTHO05D003437 4.1e-21 105.9 154 50.6
Cc02_g16520 Coffea canephora HOM05D003097 ORTHO05D003437 5.3e-21 105.5 154 42.9
CANSAT25G1721 Cannabis sativa HOM05D003097 ORTHO05D003437 6.9e-21 105.1 154 43.5
Gohir.D03G009200 Gossypium hirsutum HOM05D003097 ORTHO05D003437 6.9e-21 105.1 140 46.4
Lalb_Chr19g0139511 Lupinus albus HOM05D003097 ORTHO05D003437 6.9e-21 105.1 149 54.4
Rhsim05G0063200 Rhododendron simsii HOM05D001403 ORTHO05D001313 6.9e-21 105.1 157 48.4
CSS0029047 Camellia sinensis var. sinensis HOM05D003097 ORTHO05D003437 9.0e-21 104.8 136 50.7
Medtr1g032600 Medicago truncatula HOM05D003097 ORTHO05D003437 9.0e-21 104.8 141 50.4
Nitab4.5_0000128g0360 Nicotiana tabacum HOM05D003097 ORTHO05D003437 9.0e-21 104.8 147 41.5
Sabra04G0112700 Salix brachista HOM05D003097 ORTHO05D003437 9.0e-21 104.8 154 46.1
COL.COLO4_17256 Corchorus olitorius HOM05D003097 ORTHO05D003437 2.6e-20 103.2 154 42.9
FvH4_2g02000 Fragaria vesca HOM05D003097 ORTHO05D003437 2.6e-20 103.2 155 49.0
Actinidia31235 Actinidia chinensis HOM05D003097 ORTHO05D003437 4.5e-20 102.4 158 48.1
FAN20G1328 Fragaria x ananassa HOM05D003097 ORTHO05D003437 5.9e-20 102.1 155 48.4
PGSC0003DMG400001594 Solanum tuberosum HOM05D003097 ORTHO05D003437 7.6e-20 101.7 150 48.7
Glyma.08G148500 Glycine max HOM05D003097 ORTHO05D003437 1.0e-19 101.3 135 48.9
Lj5C185T3 Lonicera japonica HOM05D003097 ORTHO05D003437 1.3e-19 100.9 153 44.4
TPR.G35316 Trifolium pratense HOM05D003097 ORTHO05D003437 1.3e-19 100.9 140 49.3
CAN.G588.25 Capsicum annuum HOM05D003097 ORTHO05D003437 1.7e-19 100.5 150 48.0
FAN27G3375 Fragaria x ananassa HOM05D003097 ORTHO05D003437 1.7e-19 100.5 155 47.7
Peaxi162Scf00362g01043 Petunia axillaris HOM05D003097 ORTHO05D003437 1.7e-19 100.5 150 46.0
Ah.03g148800 Amaranthus hybridus HOM05D003097 ORTHO05D003437 2.2e-19 100.1 143 44.1
FAN24G0689 Fragaria x ananassa HOM05D003097 ORTHO05D003437 2.9e-19 99.8 155 48.4
Duzib052G0688 Durio zibethinus HOM05D003097 ORTHO05D003437 8.5e-19 98.2 152 44.1
Migut.N01282 Erythranthe guttata HOM05D003097 ORTHO05D003437 8.5e-19 98.2 153 44.4
FAN15G0773 Fragaria x ananassa HOM05D003097 ORTHO05D003437 1.1e-18 97.8 161 45.3
ECA233G5410 Erigeron canadensis HOM05D003097 ORTHO05D003437 4.2e-18 95.9 155 47.7
Peaxi162Scf00684g00019 Petunia axillaris HOM05D003097 ORTHO05D003437 4.2e-18 95.9 149 46.3
HanXRQChr17g0553701 Helianthus annuus HOM05D003097 ORTHO05D003437 7.2e-18 95.1 158 38.0
CiPaw.06G125400 Carya illinoinensis HOM05D003097 ORTHO05D003437 9.3e-18 94.7 139 43.9
MD05G1115800 Malus domestica HOM05D003097 ORTHO05D003437 2.7e-17 93.2 160 49.4
Glyma.12G024400 Glycine max HOM05D003097 ORTHO05D003437 6.1e-17 92.0 152 48.7
Solyc01g111130.4 Solanum lycopersicum HOM05D003097 ORTHO05D003437 7.9e-17 91.7 149 47.0
Lalb_Chr01g0001311 Lupinus albus HOM05D003097 ORTHO05D003437 1.8e-16 90.5 151 49.7
Oeu002954.1 Olea europaea HOM05D003097 ORTHO05D003437 2.3e-16 90.1 153 43.8
SGA_v2.0_scaffold207G41883 Striga asiatica HOM05D003097 ORTHO05D003437 3.9e-16 89.4 151 46.4
Sopen01g053190 Solanum pennellii HOM05D003097 ORTHO05D003437 6.7e-16 88.6 149 46.3
PGR042G1899 Punica granatum HOM05D003097 ORTHO05D003437 1.5e-15 87.4 165 36.4
ATR0810G161 Amborella trichopoda HOM05D003097 ORTHO05D003437 1.9e-15 87.0 147 41.5
THA.LOC104819748 Tarenaya hassleriana HOM05D003097 ORTHO05D003437 2.5e-15 86.7 140 41.4
Phvul.011G026500 Phaseolus vulgaris HOM05D003097 ORTHO05D003437 4.3e-15 85.9 152 45.4
CsaV3_2G015700 Cucumis sativus L. HOM05D003097 ORTHO05D003437 7.4e-15 85.1 161 42.2
THA.LOC104804101 Tarenaya hassleriana HOM05D003097 ORTHO05D003437 7.4e-15 85.1 134 41.8
Hund06404 Selenicereus undatus HOM05D003097 ORTHO05D003437 9.7e-15 84.7 131 43.5
Ciclev10028783m.g Citrus clementina HOM05D003097 ORTHO05D003437 1.3e-14 84.3 153 44.4
GSVIVG01024084001 Vitis vinifera HOM05D003097 ORTHO05D003437 1.6e-14 84.0 148 42.6
TWI75G0491 Tripterygium wilfordii HOM05D003097 ORTHO05D003437 1.1e-13 81.3 153 43.1
SGA_v2.0_scaffold80G25871 Striga asiatica HOM05D003097 ORTHO05D003437 1.8e-13 80.5 152 39.5
Glyma.15G215100 Glycine max HOM05D003097 ORTHO05D003437 2.4e-13 80.1 153 37.9
Sp3g17880 Schrenkiella parvula HOM05D003097 ORTHO05D003437 2.4e-13 80.1 146 38.4
Sed0015022 Sechium edule HOM05D003097 ORTHO05D003437 3.1e-13 79.7 149 43.6
VMungo1127G0884 Vigna mungo HOM05D003097 ORTHO05D003437 4.1e-13 79.3 151 44.4
Lalb_Chr03g0024691 Lupinus albus HOM05D003097 ORTHO05D003437 5.3e-13 79.0 153 40.5
Lsat_1_v5_gn_8_125901 Lactuca sativa HOM05D003097 ORTHO05D003437 9.0e-13 78.2 150 46.7
AT3G19860 Arabidopsis thaliana HOM05D003097 ORTHO05D003437 1.2e-12 77.8 146 38.4
Carub.0003s1974 Capsella rubella HOM05D003097 ORTHO05D003437 1.2e-12 77.8 146 38.4
Thhalv10021271m.g Eutrema salsugineum HOM05D003097 ORTHO05D003437 1.5e-12 77.4 146 38.4
ClCG02G011390 Citrullus lanatus HOM05D003097 ORTHO05D003437 3.4e-12 76.3 150 42.7
Os02g0433600 Oryza sativa ssp. japonica HOM05D003097 ORTHO05D003437 3.4e-12 76.3 176 42.0
AL3G33380 Arabidopsis lyrata HOM05D003097 ORTHO05D003437 4.5e-12 75.9 146 37.7
AUR62003365 Chenopodium quinoa HOM05D003097 ORTHO05D003437 4.5e-12 75.9 126 38.1
Aa31LG8G6630 Aethionema arabicum HOM05D003097 ORTHO05D003437 5.9e-12 75.5 144 36.8
Zm00001eb159750 Zea mays HOM05D003097 ORTHO05D003437 5.9e-12 75.5 133 44.4
ECA232G2587 Erigeron canadensis HOM05D003097 ORTHO05D003437 1.0e-11 74.7 140 38.6
Eucgr.G01757 Eucalyptus grandis HOM05D003097 ORTHO05D003437 1.0e-11 74.7 150 35.3
EL10Ac9g21441 Beta vulgaris HOM05D003097 ORTHO05D003437 1.3e-11 74.3 139 37.4
Oeu012558.1 Olea europaea HOM05D003097 ORTHO05D003437 2.9e-11 73.2 144 40.3
MELO3C020781.2 Cucumis melo HOM05D003097 ORTHO05D003437 3.8e-11 72.8 150 40.7
CDE05G0451 Ceratophyllum demersum HOM05D003097 ORTHO05D003437 6.5e-11 72.0 134 42.5
Thhalv10023630m.g Eutrema salsugineum HOM05D003097 ORTHO05D003437 8.5e-11 71.6 147 36.7
CARHR095380 Cardamine hirsuta HOM05D003097 ORTHO05D003437 1.4e-10 70.9 147 42.2
AUR62013093 Chenopodium quinoa HOM05D003097 ORTHO05D003437 2.5e-10 70.1 136 40.4
A01p34880 Brassica napus HOM05D003097 ORTHO05D003437 4.2e-10 69.3 145 37.2
BraA01t03571Z Brassica rapa HOM05D003882 ORTHO05D004598 4.2e-10 69.3 145 37.2
C01p44290 Brassica napus HOM05D003097 ORTHO05D003437 5.5e-10 68.9 145 37.2
BolC1t04394H Brassica oleracea HOM05D003882 ORTHO05D004598 5.5e-10 68.9 145 37.2
Lsat_1_v5_gn_4_144860 Lactuca sativa HOM05D003097 ORTHO05D003437 5.5e-10 68.9 147 39.5
AUR62010097 Chenopodium quinoa HOM05D003097 ORTHO05D003437 1.2e-09 67.8 148 37.8
MD15G1245200 Malus domestica HOM05D003097 ORTHO05D003437 3.6e-09 66.2 75 44.0
HPP92_027730 Vanilla planifolia HOM05D003097 ORTHO05D003437 2.3e-08 63.5 149 30.2
HPP92_026029 Vanilla planifolia HOM05D003097 ORTHO05D003437 3.0e-08 63.2 149 30.2
BcaC09g48940 Brassica carinata HOM05D003097 ORTHO05D003437 2.2e-06 57.0 145 34.5
CDE05G2414 Ceratophyllum demersum HOM05D003097 ORTHO05D003437 6.3e-06 55.5 125 41.6


User provided reference genes

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