Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L03445 Eucalyptus grandis HOM05D007195 ORTHO05D008939 3.0e-44 181.4 90 100.0
Eucgr.B02402 Eucalyptus grandis HOM05D007195 ORTHO05D008939 1.4e-41 172.6 89 95.5
Manes.11G134400 Manihot esculenta HOM05D007195 ORTHO05D008939 2.1e-32 142.1 87 74.7
Gohir.A03G038600 Gossypium hirsutum HOM05D007195 ORTHO05D008939 1.2e-29 132.9 85 71.8
Gohir.D03G129800 Gossypium hirsutum HOM05D007195 ORTHO05D008939 1.2e-29 132.9 85 71.8
Gorai.003G136500 Gossypium raimondii HOM05D007195 ORTHO05D008939 1.2e-29 132.9 85 71.8
Thecc.09G327900 Theobroma cacao HOM05D007195 ORTHO05D008939 1.2e-29 132.9 87 71.3
CiPaw.14G072400 Carya illinoinensis HOM05D007195 ORTHO05D008939 1.6e-29 132.5 87 70.1
Cc01_g12270 Coffea canephora HOM05D007195 ORTHO05D008939 4.7e-29 131.0 89 69.7
PSO339G1320 Papaver somniferum HOM05D007195 ORTHO05D008939 4.7e-29 131.0 89 70.8
Actinidia37244 Actinidia chinensis HOM05D007195 ORTHO05D008939 8.1e-29 130.2 90 71.1
Glyma.11G143000 Glycine max HOM05D007195 ORTHO05D008939 8.1e-29 130.2 85 70.6
Lj3g0003411 Lotus japonicus HOM05D007195 ORTHO05D008939 1.1e-28 129.8 87 69.0
TPR.G2998 Trifolium pratense HOM05D007195 ORTHO05D008939 1.8e-28 129.0 87 69.0
VMungo1127G1709 Vigna mungo HOM05D007195 ORTHO05D008939 2.3e-28 128.6 84 70.2
Lalb_Chr01g0003811 Lupinus albus HOM05D007195 ORTHO05D008939 5.2e-28 127.5 87 65.5
Lalb_Chr19g0137671 Lupinus albus HOM05D007195 ORTHO05D008939 8.9e-28 126.7 87 64.4
arahy.Tifrunner.gnm1.ann1.73EBMB Arachis hypogaea HOM05D007195 ORTHO05D008939 1.2e-27 126.3 87 65.5
Medtr4g060990 Medicago truncatula HOM05D007195 ORTHO05D008939 2.0e-27 125.6 87 64.4
CANSAT54G2014 Cannabis sativa HOM05D007195 ORTHO05D008939 4.4e-27 124.4 87 69.0
QL01p033425 Quercus lobata HOM05D007195 ORTHO05D008939 4.4e-27 124.4 87 67.8
ATR0033G009 Amborella trichopoda HOM05D007195 ORTHO05D008939 5.8e-27 124.0 87 67.8
PGSC0003DMG401015537 Solanum tuberosum HOM05D007195 ORTHO05D008939 5.8e-27 124.0 90 67.8
Atru.chr3.3816 Acer truncatum HOM05D007195 ORTHO05D008939 7.5e-27 123.6 89 64.0
Potri.001G235400 Populus trichocarpa HOM05D007195 ORTHO05D008939 7.5e-27 123.6 87 65.5
Solyc11g073130.2 Solanum lycopersicum HOM05D007195 ORTHO05D008939 9.9e-27 123.2 90 67.8
Sopen11g030780 Solanum pennellii HOM05D007195 ORTHO05D008939 9.9e-27 123.2 90 67.8
CSS0047106 Camellia sinensis var. sinensis HOM05D007195 ORTHO05D008939 1.7e-26 122.5 90 68.9
Ca_19192_v3 Cicer arietinum L. HOM05D007195 ORTHO05D008939 2.2e-26 122.1 87 65.5
CAN.G420.9 Capsicum annuum HOM05D007195 ORTHO05D008939 3.7e-26 121.3 88 65.9
Rhsim13G0087100 Rhododendron simsii HOM05D007195 ORTHO05D008939 3.7e-26 121.3 90 65.6
ClCG02G020450 Citrullus lanatus HOM05D007195 ORTHO05D008939 4.9e-26 120.9 89 65.2
TWI79G0669 Tripterygium wilfordii HOM05D007195 ORTHO05D008939 4.9e-26 120.9 86 67.4
Hma1.2p1_0846F.1_g227620 Hydrangea macrophylla HOM05D007195 ORTHO05D008939 1.1e-25 119.8 87 69.0
vmacro03115 Vaccinium macrocarpon HOM05D007195 ORTHO05D008939 1.1e-25 119.8 89 64.0
Migut.D02132 Erythranthe guttata HOM05D007195 ORTHO05D008939 1.4e-25 119.4 89 67.4
Oeu040291.1 Olea europaea HOM05D007195 ORTHO05D008939 1.4e-25 119.4 89 69.7
Nitab4.5_0000610g0300 Nicotiana tabacum HOM05D007195 ORTHO05D008939 2.4e-25 118.6 87 65.5
Cpa.g.sc190.38 Carica papaya HOM05D007195 ORTHO05D008939 3.2e-25 118.2 87 66.7
Haze_24028 Corylus avellana HOM05D007195 ORTHO05D008939 5.4e-25 117.5 87 63.2
MELO3C013676.2 Cucumis melo HOM05D007195 ORTHO05D008939 5.4e-25 117.5 87 64.4
MBI05_g35606_MAGBIO Magnolia biondii HOM05D007195 ORTHO05D008939 5.4e-25 117.5 84 66.7
CsaV3_6G022170 Cucumis sativus L. HOM05D007195 ORTHO05D008939 7.1e-25 117.1 87 63.2
DCAR_015600 Daucus carota HOM05D007195 ORTHO05D008939 7.1e-25 117.1 90 63.3
MSTRG.18595 Avicennia marina HOM05D007195 ORTHO05D008939 9.2e-25 116.7 89 65.2
SalBow3G3377 Salvia bowleyana HOM05D007195 ORTHO05D008939 9.2e-25 116.7 85 67.1
Cfa011446 Carpinus fangiana HOM05D007195 ORTHO05D008939 2.1e-24 115.5 87 63.2
Sc12g0001700 Simmondsia chinensis HOM05D007195 ORTHO05D008939 2.1e-24 115.5 86 65.1
PSO384G1952 Papaver somniferum HOM05D007195 ORTHO05D008939 2.7e-24 115.2 83 67.5
Sed0026895 Sechium edule HOM05D007195 ORTHO05D008939 6.0e-24 114.0 87 63.2
EL10Ac7g15961 Beta vulgaris HOM05D007195 ORTHO05D008939 3.9e-23 111.3 87 65.5
AUR62009627 Chenopodium quinoa HOM05D007195 ORTHO05D008939 6.6e-23 110.5 87 64.4
CDE11G0069 Ceratophyllum demersum HOM05D007195 ORTHO05D008939 1.9e-22 109.0 85 61.2
Os05g0460800 Oryza sativa ssp. japonica HOM05D007195 ORTHO05D008939 5.6e-22 107.5 85 58.8
Zm00001eb351400 Zea mays HOM05D007195 ORTHO05D008939 1.2e-21 106.3 85 57.6
Nn2g10480 Nelumbo nucifera HOM05D007195 ORTHO05D008939 2.8e-21 105.1 68 76.5
HanXRQChr06g0175991 Helianthus annuus HOM05D007195 ORTHO05D008939 3.6e-21 104.8 85 57.6
Prupe.6G085100 Prunus persica HOM05D007195 ORTHO05D008939 3.6e-21 104.8 89 62.9
MD03G1100000 Malus domestica HOM05D007195 ORTHO05D008939 4.7e-21 104.4 89 62.9
GSVIVG01025036001 Vitis vinifera HOM05D007195 ORTHO05D008939 1.8e-20 102.4 89 59.6
AT5G59770 Arabidopsis thaliana HOM05D007195 ORTHO05D008939 4.0e-20 101.3 88 59.1
AL8G36290 Arabidopsis lyrata HOM05D007195 ORTHO05D008939 1.2e-19 99.8 88 58.0
BraA02t05767Z Brassica rapa HOM05D007195 ORTHO05D008939 2.0e-19 99.0 88 58.0
Thhalv10014612m.g Eutrema salsugineum HOM05D007195 ORTHO05D008939 2.6e-19 98.6 88 56.8
A02p06880 Brassica napus HOM05D007195 ORTHO05D008939 4.4e-19 97.8 88 56.8
Aa31sc23G190 Aethionema arabicum HOM05D007195 ORTHO05D008939 5.8e-19 97.4 89 53.9
C02p12160 Brassica napus HOM05D007195 ORTHO05D008939 5.8e-19 97.4 88 56.8
BolC2t07319H Brassica oleracea HOM05D007195 ORTHO05D008939 5.8e-19 97.4 88 56.8
DCAR_018881 Daucus carota HOM05D007195 ORTHO05D008939 7.6e-19 97.1 90 55.6
Sp6g21440 Schrenkiella parvula HOM05D007195 ORTHO05D008939 7.6e-19 97.1 87 56.3
THA.LOC104810801 Tarenaya hassleriana HOM05D007195 ORTHO05D008939 7.6e-19 97.1 95 52.6
CARHR273350 Cardamine hirsuta HOM05D007195 ORTHO05D008939 1.3e-18 96.3 88 56.8
SEGI_20662 Sequoiadendron giganteum HOM05D007195 ORTHO05D008939 1.3e-18 96.3 83 53.0
Ciclev10029246m.g Citrus clementina HOM05D007195 ORTHO05D008939 1.7e-18 95.9 87 54.0
Carub.0008s2043 Capsella rubella HOM05D007195 ORTHO05D008939 2.2e-18 95.5 88 55.7
BcaB05g22577 Brassica carinata HOM05D007195 ORTHO05D008939 4.9e-18 94.4 88 55.7
Sabra16G0141600 Salix brachista HOM05D007195 ORTHO05D008939 5.4e-17 90.9 157 35.0
Psat6g139760 Pisum sativum HOM05D007195 ORTHO05D008939 7.1e-17 90.5 63 61.9
Thhalv10027965m.g Eutrema salsugineum HOM05D007195 ORTHO05D008939 4.6e-16 87.8 77 58.4
Lsat_1_v5_gn_8_78640 Lactuca sativa HOM05D007195 ORTHO05D008939 3.3e-14 81.6 64 54.7
COL.COLO4_18444 Corchorus olitorius HOM05D007195 ORTHO05D008939 5.6e-14 80.9 78 56.4
FvH4_3g34950 Fragaria vesca HOM05D007195 ORTHO05D008939 1.6e-13 79.3 87 51.7
FAN11G1442 Fragaria x ananassa HOM05D007195 ORTHO05D008939 1.6e-13 79.3 87 51.7
FAN16G0269 Fragaria x ananassa HOM05D007195 ORTHO05D008939 1.6e-13 79.3 87 51.7
FAN21G0153 Fragaria x ananassa HOM05D007195 ORTHO05D008939 1.6e-13 79.3 87 51.7
ECA236G1878 Erigeron canadensis HOM05D007195 ORTHO05D000180 2.1e-13 79.0 62 54.8
AagrBONN_evm.TU.Sc2ySwM_344.4841 Anthoceros agrestis HOM05D007195 ORTHO05D008939 2.8e-13 78.6 83 49.4
RcHm_v2.0_Chr5g0062801 Rosa chinensis HOM05D007195 ORTHO05D008939 2.8e-13 78.6 87 50.6
arahy.Tifrunner.gnm1.ann1.7SC5JI Arachis hypogaea HOM05D007195 ORTHO05D008939 6.2e-13 77.4 54 57.4
Peaxi162Scf00411g00012 Petunia axillaris HOM05D007195 ORTHO05D008939 1.4e-12 76.3 56 58.9
MBI05_g38489_MAGBIO Magnolia biondii HOM05D007195 ORTHO05D008939 9.0e-12 73.6 53 60.4
unitig_899.g14897 Utricularia gibba HOM05D007195 ORTHO05D008939 1.5e-11 72.8 57 59.6
Nitab4.5_0003179g0020 Nicotiana tabacum HOM05D007195 ORTHO05D008939 2.0e-11 72.4 55 58.2
Dinv32847 Davidia involucrata HOM05D007195 ORTHO05D008939 7.6e-11 70.5 61 55.7
Mapoly0010s0013 Marchantia polymorpha HOM05D007195 ORTHO05D008939 1.1e-09 66.6 79 53.2
SMO343G0124 Selaginella moellendorffii HOM05D007195 ORTHO05D008939 7.1e-09 63.9 86 44.2
MCO05G519 Micromonas commoda HOM05D004350 ORTHO05D008939 6.0e-08 60.8 92 39.1
AUR62001839 Chenopodium quinoa HOM05D007195 ORTHO05D008939 1.5e-06 56.2 72 43.1
Cre08.g363500 Chlamydomonas reinhardtii HOM05D004350 ORTHO05D008939 3.3e-06 55.1 82 41.5
PRCOL_00000565 Prasinoderma coloniale HOM05D004350 ORTHO05D008939 3.3e-06 55.1 93 39.8


User provided reference genes

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