Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L03440 Eucalyptus grandis HOM05D002102 ORTHO05D008242 8.7e-72 273.9 173 100.0
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 2.8e-62 242.3 158 99.4
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 8.5e-27 124.4 109 62.4
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 8.5e-27 124.4 101 64.4
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 1.1e-26 124.0 99 65.7
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 1.9e-26 123.2 96 70.8
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 7.2e-26 121.3 104 62.5
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 8.0e-25 117.9 108 62.0
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 1.0e-24 117.5 104 59.6
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 1.8e-24 116.7 69 82.6
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 3.0e-24 115.9 119 57.1
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 3.0e-24 115.9 69 82.6
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 4.0e-24 115.5 71 78.9
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 4.0e-24 115.5 73 82.2
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 5.2e-24 115.2 72 76.4
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 5.2e-24 115.2 69 81.2
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 5.2e-24 115.2 70 82.9
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 5.2e-24 115.2 69 79.7
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 8.8e-24 114.4 117 63.2
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 1.1e-23 114.0 117 59.8
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 1.1e-23 114.0 72 80.6
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 1.1e-23 114.0 69 81.2
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 1.5e-23 113.6 104 60.6
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 2.6e-23 112.8 69 81.2
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 2.6e-23 112.8 104 60.6
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 2.6e-23 112.8 69 78.3
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 2.6e-23 112.8 105 62.9
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 3.3e-23 112.5 69 78.3
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 4.4e-23 112.1 72 75.0
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 4.4e-23 112.1 65 84.6
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 4.4e-23 112.1 97 61.9
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 4.4e-23 112.1 107 67.3
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 5.7e-23 111.7 72 75.0
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 5.7e-23 111.7 96 61.5
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 5.7e-23 111.7 71 77.5
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 5.7e-23 111.7 105 63.8
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 5.7e-23 111.7 96 61.5
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 5.7e-23 111.7 96 61.5
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 5.7e-23 111.7 96 61.5
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 5.7e-23 111.7 105 65.7
Hund01844 Selenicereus undatus HOM05D002102 ORTHO05D008242 5.7e-23 111.7 68 77.9
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 7.5e-23 111.3 108 67.6
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 7.5e-23 111.3 105 61.9
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 9.7e-23 110.9 66 84.8
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 1.3e-22 110.5 72 75.0
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 1.3e-22 110.5 72 75.0
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 1.3e-22 110.5 72 75.0
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 1.3e-22 110.5 72 75.0
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 1.3e-22 110.5 72 75.0
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 1.3e-22 110.5 72 75.0
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 1.7e-22 110.2 108 59.3
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 2.8e-22 109.4 67 80.6
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 2.8e-22 109.4 71 76.1
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 4.8e-22 108.6 123 58.5
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 4.8e-22 108.6 105 60.0
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 4.8e-22 108.6 86 66.3
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 8.2e-22 107.8 67 77.6
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 8.2e-22 107.8 72 72.2
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 1.1e-21 107.5 107 62.6
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 1.4e-21 107.1 93 59.1
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 1.4e-21 107.1 72 73.6
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 2.4e-21 106.3 96 66.7
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 2.4e-21 106.3 69 79.7
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 3.1e-21 105.9 104 59.6
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 3.1e-21 105.9 114 52.6
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 4.1e-21 105.5 107 56.1
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 4.1e-21 105.5 69 79.7
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 4.1e-21 105.5 69 79.7
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 5.3e-21 105.1 66 81.8
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 5.3e-21 105.1 110 63.6
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 7.0e-21 104.8 96 65.6
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 7.0e-21 104.8 102 57.8
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 7.0e-21 104.8 69 78.3
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 1.2e-20 104.0 66 80.3
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.2e-20 104.0 66 80.3
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 1.2e-20 104.0 106 55.7
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 1.2e-20 104.0 67 71.6
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.6e-20 103.6 69 78.3
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 1.6e-20 103.6 67 71.6
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 2.0e-20 103.2 66 75.8
Actinidia31356 Actinidia chinensis HOM05D002102 ORTHO05D008242 2.0e-20 103.2 97 60.8
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 2.0e-20 103.2 106 55.7
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 2.0e-20 103.2 106 55.7
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 2.6e-20 102.8 65 76.9
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 2.6e-20 102.8 64 79.7
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 7.7e-20 101.3 72 69.4
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 7.7e-20 101.3 67 74.6
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 1.0e-19 100.9 71 69.0
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 1.1e-18 97.4 98 55.1
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 1.1e-18 97.4 67 77.6
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 2.5e-18 96.3 86 59.3
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 3.2e-18 95.9 54 85.2
MD05G1242600 Malus domestica HOM05D002102 ORTHO05D008242 3.2e-18 95.9 66 75.8
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 5.5e-18 95.1 97 54.6
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 4.0e-16 89.0 57 78.9
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 1.5e-15 87.0 104 51.0
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 2.0e-15 86.7 121 43.8
SEGI_24162 Sequoiadendron giganteum HOM05D002102 ORTHO05D008242 1.7e-14 83.6 111 49.5
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 3.7e-14 82.4 105 49.5
AagrBONN_evm.TU.Sc2ySwM_368.1584 Anthoceros agrestis HOM05D002102 ORTHO05D008242 4.1e-13 79.0 67 58.2
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 2.0e-12 76.6 91 50.5
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 7.7e-12 74.7 44 79.5
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 1.9e-10 70.1 44 75.0
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 3.6e-09 65.9 39 82.1
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 3.6e-09 65.9 39 82.1
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 6.1e-09 65.1 44 70.5
Nitab4.5_0007687g0040 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.4e-08 63.9 38 78.9
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 1.3e-06 57.4 57 57.9
CANSAT25G0241 Cannabis sativa HOM05D002102 ORTHO05D008242 4.9e-06 55.5 34 73.5
Nitab4.5_0001815g0140 Nicotiana tabacum HOM05D002102 ORTHO05D004119 6.3e-06 55.1 34 70.6


User provided reference genes

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