Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 1.2e-106 389.8 188 100.0
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 3.4e-90 335.1 188 83.0
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 4.5e-90 334.7 188 83.0
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 4.5e-90 334.7 188 85.1
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 5.9e-90 334.3 188 83.0
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 5.9e-90 334.3 188 82.4
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 7.7e-90 334.0 188 82.4
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.0e-89 333.6 188 82.4
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 1.3e-89 333.2 188 84.0
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 1.3e-89 333.2 188 82.4
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 1.7e-89 332.8 188 81.9
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 2.2e-89 332.4 188 82.4
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 2.2e-89 332.4 188 82.4
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 2.9e-89 332.0 188 84.6
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 3.8e-89 331.6 188 84.0
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 6.5e-89 330.9 188 84.0
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.4e-88 329.7 188 82.4
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 81.9
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 81.9
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 82.4
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 81.9
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 81.4
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 83.0
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 81.4
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 81.4
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 3.2e-88 328.6 188 83.0
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 82.4
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 81.4
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 82.4
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 81.4
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 81.4
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 81.9
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 82.4
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 82.4
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 82.4
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 83.5
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 81.9
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 80.3
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 1.2e-87 326.6 187 81.8
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 81.4
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 81.4
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 80.9
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 81.4
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 4.7e-87 324.7 188 80.9
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 4.7e-87 324.7 188 81.4
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 79.8
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 80.9
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 80.9
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 80.9
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 80.9
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 79.8
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 80.9
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 80.9
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 80.9
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 78.2
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 80.9
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 80.9
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 79.8
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 3.0e-86 322.0 188 80.9
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 3.0e-86 322.0 188 81.4
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 3.9e-86 321.6 188 79.3
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 3.9e-86 321.6 188 79.3
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 3.9e-86 321.6 186 79.6
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 5.2e-86 321.2 188 80.3
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 5.2e-86 321.2 188 80.3
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 5.2e-86 321.2 188 80.3
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 5.2e-86 321.2 188 80.3
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 5.2e-86 321.2 186 79.6
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 6.7e-86 320.9 188 80.3
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 6.7e-86 320.9 188 78.7
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 8.8e-86 320.5 188 79.8
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 8.8e-86 320.5 188 80.9
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 8.8e-86 320.5 186 79.6
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 8.8e-86 320.5 186 79.6
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 8.8e-86 320.5 186 79.6
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 8.8e-86 320.5 188 80.9
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 8.8e-86 320.5 188 80.3
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 1.1e-85 320.1 190 80.5
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 1.1e-85 320.1 190 80.5
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 1.5e-85 319.7 188 78.7
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 2.0e-85 319.3 188 79.8
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 3.3e-85 318.5 188 79.3
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 5.7e-85 317.8 188 80.3
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 5.7e-85 317.8 188 78.2
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 7.4e-85 317.4 188 80.3
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 7.4e-85 317.4 179 81.6
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 7.4e-85 317.4 186 79.0
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 9.7e-85 317.0 188 78.2
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 9.7e-85 317.0 188 79.8
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 9.7e-85 317.0 188 79.8
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 9.7e-85 317.0 188 79.8
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 1.3e-84 316.6 188 79.3
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 4.8e-84 314.7 188 79.3
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 4.8e-84 314.7 188 79.3
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 4.8e-84 314.7 188 79.3
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 8.2e-84 313.9 188 78.7
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 8.2e-84 313.9 188 79.3
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 8.2e-84 313.9 188 78.2
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 5.3e-83 311.2 180 81.1
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 7.0e-83 310.8 188 76.1
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 2.0e-82 309.3 188 75.5
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 2.6e-82 308.9 188 76.6
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 5.9e-82 307.8 188 76.6
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 2.2e-81 305.8 188 75.5
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 2.9e-81 305.4 188 76.1
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 1.9e-80 302.8 188 75.0
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 5.5e-80 301.2 188 75.5
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 9.4e-80 300.4 189 75.7
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 9.4e-80 300.4 188 74.5
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.1e-79 299.3 174 79.9
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 2.7e-79 298.9 188 73.4
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 4.7e-79 298.1 180 76.1
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 6.1e-79 297.7 188 76.6
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 6.1e-79 297.7 188 74.5
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 8.0e-79 297.4 189 76.2
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 1.0e-78 297.0 188 76.6
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 6.7e-78 294.3 169 78.7
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 6.7e-78 294.3 190 75.8
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 6.7e-78 294.3 189 76.2
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 8.8e-78 293.9 189 74.6
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.2e-77 293.5 190 75.8
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 1.5e-77 293.1 188 73.9
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 2.0e-77 292.7 189 76.7
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 2.0e-77 292.7 189 76.7
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 2.8e-76 288.9 188 71.8
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 2.8e-76 288.9 188 74.5
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 2.2e-73 279.3 188 71.3
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 1.2e-71 273.5 179 74.3
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.2e-71 273.5 179 74.9
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 2.1e-71 272.7 188 67.0
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 2.7e-71 272.3 188 68.1
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 1.8e-70 269.6 188 71.8
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 8.8e-70 267.3 188 66.0
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 2.6e-69 265.8 188 71.3
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 1.1e-67 260.4 188 65.4
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 1.1e-67 260.4 188 65.4
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 1.4e-67 260.0 187 66.8
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 3.1e-67 258.8 177 71.8
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 3.1e-67 258.8 188 69.7
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 5.4e-67 258.1 187 66.3
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 9.1e-67 257.3 189 64.6
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 1.1e-64 250.4 187 63.6
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 6.8e-62 241.1 181 64.1
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 1.8e-59 233.0 178 64.0
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 2.3e-57 226.1 188 56.4
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 2.1e-55 219.5 165 67.9
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 3.2e-51 205.7 188 56.4
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 1.7e-49 199.9 124 83.1
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 8.9e-46 187.6 187 49.7
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 4.9e-44 181.8 115 72.2
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 2.4e-43 179.5 121 68.6
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 1.2e-42 177.2 109 76.1
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 7.3e-40 167.9 173 52.6
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 8.1e-39 164.5 188 48.9
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 5.2e-38 161.8 85 88.2
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 5.8e-37 158.3 127 60.6
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 1.8e-30 136.7 78 79.5
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 6.0e-26 121.7 92 66.3
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 4.4e-21 105.5 64 73.4
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 1.3e-09 67.4 32 93.8


User provided reference genes

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