Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 8.9e-57 223.4 114 100.0
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 8.6e-28 127.1 101 71.3
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.5e-27 125.6 101 70.3
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.5e-27 125.6 101 70.3
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 6.2e-26 120.9 101 66.3
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 8.1e-26 120.6 108 62.0
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 8.1e-26 120.6 107 65.4
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 1.8e-25 119.4 108 61.1
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 2.4e-25 119.0 101 65.3
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 2.4e-25 119.0 108 61.1
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 3.1e-25 118.6 101 65.3
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 4.0e-25 118.2 101 66.3
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 5.2e-25 117.9 107 61.7
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 6.9e-25 117.5 101 66.3
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 6.9e-25 117.5 101 65.3
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 6.9e-25 117.5 101 65.3
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 8.9e-25 117.1 101 65.3
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 8.9e-25 117.1 101 65.3
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 1.5e-24 116.3 101 63.4
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 1.5e-24 116.3 101 63.4
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 2.0e-24 115.9 106 62.3
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 2.6e-24 115.5 107 64.5
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 3.4e-24 115.2 101 64.4
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 3.4e-24 115.2 101 64.4
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 3.4e-24 115.2 101 64.4
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 3.4e-24 115.2 101 62.4
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 3.4e-24 115.2 101 64.4
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 5.8e-24 114.4 103 64.1
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 9.9e-24 113.6 101 63.4
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 1.3e-23 113.2 101 63.4
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 1.3e-23 113.2 101 61.4
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 2.2e-23 112.5 106 60.4
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 2.2e-23 112.5 101 63.4
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 2.2e-23 112.5 101 63.4
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 2.2e-23 112.5 101 63.4
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 2.2e-23 112.5 107 59.8
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 2.9e-23 112.1 103 61.2
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 4.9e-23 111.3 101 61.4
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 4.9e-23 111.3 101 62.4
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 4.9e-23 111.3 103 62.1
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 8.4e-23 110.5 101 62.4
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 8.4e-23 110.5 103 62.1
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 8.4e-23 110.5 107 61.7
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 8.4e-23 110.5 102 60.8
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 1.1e-22 110.2 107 60.7
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 1.1e-22 110.2 102 62.7
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 1.1e-22 110.2 102 60.8
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 1.4e-22 109.8 107 58.9
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 1.9e-22 109.4 107 60.7
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 2.4e-22 109.0 102 57.8
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 2.4e-22 109.0 104 61.5
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 3.2e-22 108.6 102 58.8
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 3.2e-22 108.6 103 60.2
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 3.2e-22 108.6 101 61.4
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 3.2e-22 108.6 101 61.4
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 3.2e-22 108.6 99 59.6
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 4.2e-22 108.2 102 57.8
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 4.2e-22 108.2 101 59.4
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 5.4e-22 107.8 101 57.4
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 5.4e-22 107.8 101 61.4
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 5.4e-22 107.8 104 59.6
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 5.4e-22 107.8 104 59.6
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 7.1e-22 107.5 102 56.9
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 7.1e-22 107.5 104 60.6
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 7.1e-22 107.5 102 59.8
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 7.1e-22 107.5 104 59.6
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 7.1e-22 107.5 101 59.4
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 9.3e-22 107.1 102 55.9
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 9.3e-22 107.1 101 61.4
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 9.3e-22 107.1 101 59.4
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 9.3e-22 107.1 101 60.4
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 1.2e-21 106.7 101 60.4
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 1.2e-21 106.7 101 59.4
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.6e-21 106.3 101 58.4
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 1.6e-21 106.3 106 56.6
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 2.1e-21 105.9 102 55.9
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.1e-21 105.9 111 54.1
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.7e-21 105.5 99 58.6
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.7e-21 105.5 99 58.6
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 3.5e-21 105.1 101 59.4
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 3.5e-21 105.1 101 59.4
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 3.5e-21 105.1 102 56.9
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 4.6e-21 104.8 101 57.4
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 4.6e-21 104.8 107 57.9
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 6.0e-21 104.4 102 55.9
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 6.0e-21 104.4 101 59.4
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 7.8e-21 104.0 101 58.4
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 7.8e-21 104.0 99 58.6
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 7.8e-21 104.0 99 58.6
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 1.0e-20 103.6 102 54.9
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 1.3e-20 103.2 107 54.2
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 2.3e-20 102.4 102 53.9
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 2.3e-20 102.4 102 53.9
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 2.3e-20 102.4 102 53.9
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 2.3e-20 102.4 102 53.9
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 2.3e-20 102.4 105 56.2
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 3.0e-20 102.1 102 54.9
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 3.9e-20 101.7 101 57.4
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 3.9e-20 101.7 100 58.0
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 6.6e-20 100.9 110 54.5
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 6.6e-20 100.9 101 56.4
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 1.1e-19 100.1 101 57.4
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 1.1e-19 100.1 102 55.9
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 1.5e-19 99.8 102 55.9
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 1.9e-19 99.4 101 57.4
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 2.5e-19 99.0 99 55.6
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 2.5e-19 99.0 102 54.9
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 2.5e-19 99.0 102 55.9
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 3.3e-19 98.6 101 53.5
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 3.3e-19 98.6 101 57.4
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 4.3e-19 98.2 105 54.3
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 7.3e-19 97.4 94 59.6
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 9.6e-19 97.1 101 53.5
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 9.6e-19 97.1 101 56.4
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.8e-18 95.5 102 59.8
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 8.1e-18 94.0 101 53.5
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 1.4e-17 93.2 105 54.3
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.8e-17 92.8 105 53.3
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 9.0e-17 90.5 101 49.5
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 9.0e-17 90.5 104 50.0
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 4.9e-15 84.7 98 51.0
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.4e-14 83.2 75 62.7
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 4.2e-14 81.6 99 47.5
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 7.1e-14 80.9 98 46.9
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 1.2e-13 80.1 62 66.1
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 1.8e-12 76.3 98 50.0
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 5.1e-12 74.7 101 43.6
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 1.5e-11 73.2 101 42.6
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 9.6e-11 70.5 100 48.0
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 4.0e-09 65.1 105 36.2
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 4.0e-09 65.1 98 44.9
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 6.9e-09 64.3 96 38.5
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 7.6e-08 60.8 45 68.9
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 3.8e-07 58.5 102 36.3
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 1.4e-06 56.6 72 44.4
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 1.4e-06 56.6 72 44.4


User provided reference genes

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