Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 7.4e-239 830.1 409 100.0
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 2.7e-220 768.5 409 91.0
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 7.7e-220 766.9 409 89.7
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 1.0e-219 766.5 409 89.5
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 6.5e-219 763.8 409 89.5
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 6.5e-219 763.8 406 90.9
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 1.1e-218 763.1 409 89.2
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 1.5e-218 762.7 409 90.2
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 1.9e-218 762.3 409 90.2
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 1.9e-218 762.3 408 89.5
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 2.5e-218 761.9 409 89.5
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 5.5e-218 760.8 408 90.0
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 7.2e-218 760.4 406 89.9
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 9.4e-218 760.0 406 90.4
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 1.2e-217 759.6 409 90.0
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.2e-217 759.6 409 90.0
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.1e-217 758.8 409 89.2
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 3.6e-217 758.1 409 89.7
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 6.1e-217 757.3 409 89.7
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 6.1e-217 757.3 406 89.2
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 1.0e-216 756.5 406 89.9
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.4e-216 756.1 406 89.9
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.4e-216 756.1 409 89.0
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.8e-216 755.7 406 90.1
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 2.3e-216 755.4 406 89.7
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.3e-216 755.4 406 89.9
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 3.0e-216 755.0 409 89.0
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 4.0e-216 754.6 406 89.7
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 4.0e-216 754.6 409 88.5
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 5.2e-216 754.2 405 88.9
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 6.8e-216 753.8 406 89.2
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.5e-215 752.7 406 89.4
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 1.5e-215 752.7 409 88.8
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.5e-215 752.7 409 89.2
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 1.5e-215 752.7 409 88.5
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 2.0e-215 752.3 406 89.4
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 3.4e-215 751.5 407 88.5
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 3.4e-215 751.5 409 88.5
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 4.4e-215 751.1 409 88.8
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 7.5e-215 750.4 411 89.1
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 7.5e-215 750.4 409 88.5
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 2.8e-214 748.4 406 88.2
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 4.8e-214 747.7 409 87.5
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 6.3e-214 747.3 409 87.3
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 1.1e-213 746.5 404 88.6
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 1.4e-213 746.1 406 88.2
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 1.4e-213 746.1 407 87.2
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 1.4e-213 746.1 405 87.4
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 1.8e-213 745.7 404 87.9
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 1.8e-213 745.7 409 87.3
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 3.1e-213 745.0 406 88.4
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 4.1e-213 744.6 406 87.4
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 4.1e-213 744.6 409 87.3
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 4.1e-213 744.6 409 87.3
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 5.4e-213 744.2 406 87.7
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 7.0e-213 743.8 406 88.2
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 7.0e-213 743.8 406 88.2
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 1.6e-212 742.7 406 87.9
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 2.0e-212 742.3 404 87.4
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 2.7e-212 741.9 409 86.6
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 2.7e-212 741.9 425 85.9
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 3.5e-212 741.5 406 87.4
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 3.5e-212 741.5 406 86.7
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 5.9e-212 740.7 404 87.9
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 7.7e-212 740.3 409 86.3
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 1.3e-211 739.6 406 87.2
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 1.7e-211 739.2 406 86.9
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 1.7e-211 739.2 404 86.9
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 2.3e-211 738.8 409 86.3
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 3.8e-211 738.0 409 85.8
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 6.6e-211 737.3 404 86.6
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 8.6e-211 736.9 421 85.7
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 1.1e-210 736.5 409 86.1
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 1.1e-210 736.5 410 86.3
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 1.1e-210 736.5 409 86.3
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 1.5e-210 736.1 409 86.6
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 1.5e-210 736.1 409 86.1
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 1.5e-210 736.1 406 86.9
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 1.9e-210 735.7 404 86.4
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 3.3e-210 734.9 409 86.8
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 4.2e-210 734.6 409 85.8
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 5.5e-210 734.2 404 86.6
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 1.2e-209 733.0 405 86.7
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 2.8e-209 731.9 448 81.0
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 2.8e-209 731.9 452 80.8
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 6.1e-209 730.7 409 85.8
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 6.1e-209 730.7 406 86.0
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 1.0e-208 729.9 407 86.0
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 1.4e-208 729.6 409 85.3
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 3.0e-208 728.4 409 85.1
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 3.0e-208 728.4 409 85.1
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 4.0e-208 728.0 409 85.1
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 8.9e-208 726.9 410 85.4
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 8.9e-208 726.9 410 85.4
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 8.9e-208 726.9 410 85.1
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 8.9e-208 726.9 405 85.9
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 2.0e-207 725.7 409 85.1
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 2.6e-207 725.3 410 85.4
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 4.4e-207 724.5 410 83.9
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 5.7e-207 724.2 410 83.9
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 7.5e-207 723.8 406 85.5
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 1.3e-206 723.0 406 86.0
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 1.7e-206 722.6 476 76.9
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 2.2e-206 722.2 396 87.6
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 2.8e-206 721.8 406 84.7
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 1.1e-205 719.9 436 81.7
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 4.5e-204 714.5 405 84.0
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.9e-202 709.1 406 83.5
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 4.3e-202 708.0 452 76.3
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 2.8e-201 705.3 383 89.0
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 2.8e-201 705.3 385 88.1
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 8.0e-201 703.7 406 83.0
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 4.0e-200 701.4 377 89.9
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 5.8e-199 697.6 520 69.2
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 3.5e-196 688.3 385 86.8
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 1.3e-195 686.4 410 82.0
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 1.5e-194 682.9 358 91.3
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 2.1e-193 679.1 413 79.4
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 2.8e-193 678.7 415 80.5
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 1.4e-189 666.4 395 81.5
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 1.2e-188 663.3 356 89.0
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 3.5e-188 661.8 392 81.4
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 1.2e-185 653.3 409 76.8
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 2.3e-184 649.0 358 86.6
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 2.4e-181 639.0 406 78.6
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.4e-176 623.2 405 73.3
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 8.9e-176 620.5 404 73.8
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 5.8e-175 617.8 412 73.5
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 9.6e-170 600.5 399 70.7
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 2.6e-167 592.4 320 88.1
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 2.3e-163 579.3 387 72.1
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 1.0e-155 553.9 409 69.4
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 3.0e-155 552.4 387 73.4
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 4.3e-146 521.9 318 79.6
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 6.9e-144 514.6 400 64.0
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.3e-142 510.4 310 81.6
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 9.0e-136 487.6 245 97.1
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 5.9e-127 458.4 258 84.1
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 2.7e-124 449.5 368 61.7
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 9.7e-122 441.0 385 57.9
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 6.1e-116 421.8 238 84.5
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 4.5e-111 405.6 225 84.4
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 1.5e-106 390.6 239 78.2
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 2.7e-100 369.8 197 90.4
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.4e-80 304.3 404 44.3
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 2.6e-74 283.5 390 43.6
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 3.5e-71 273.1 183 74.9
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 1.2e-68 264.6 180 70.6
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 6.2e-60 235.7 141 77.3
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 1.1e-59 235.0 140 77.9
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 2.4e-56 223.8 124 84.7
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 2.4e-48 197.2 130 76.2
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 2.4e-19 100.9 64 75.0
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.3e-17 95.1 58 70.7


User provided reference genes

Program Settings