Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02465 Eucalyptus grandis HOM05D000010 ORTHO05D000063 3.5e-83 311.6 163 100.0
Eucgr.G02740 Eucalyptus grandis HOM05D000010 ORTHO05D000063 4.8e-80 301.2 163 95.7
PGR142G1088 Punica granatum HOM05D000010 ORTHO05D000063 3.0e-34 149.1 153 56.9
Duzib106G2020 Durio zibethinus HOM05D000010 ORTHO05D000063 6.1e-27 124.8 167 43.7
Gohir.A10G200600 Gossypium hirsutum HOM05D000010 ORTHO05D000063 5.2e-26 121.7 149 47.0
CiPaw.01G266000 Carya illinoinensis HOM05D000010 ORTHO05D000063 1.3e-24 117.1 171 40.9
Gohir.D10G208450 Gossypium hirsutum HOM05D000010 ORTHO05D000063 1.7e-24 116.7 155 45.8
Gorai.011G234200 Gossypium raimondii HOM05D000010 ORTHO05D000063 1.7e-24 116.7 155 45.8
FvH4_7g06500 Fragaria vesca HOM05D000010 ORTHO05D000063 2.8e-24 115.9 163 44.8
FAN01G0400 Fragaria x ananassa HOM05D000010 ORTHO05D000063 2.8e-24 115.9 163 44.8
FAN06G4192 Fragaria x ananassa HOM05D000010 ORTHO05D000063 2.8e-24 115.9 163 44.8
Thecc.10G088600 Theobroma cacao HOM05D000010 ORTHO05D000063 6.3e-24 114.8 153 43.8
Duzib128G0258 Durio zibethinus HOM05D000010 ORTHO05D000063 8.3e-24 114.4 168 42.3
FAN03G0206 Fragaria x ananassa HOM05D000010 ORTHO05D000063 8.3e-24 114.4 163 44.2
RcHm_v2.0_Chr1g0334881 Rosa chinensis HOM05D000010 ORTHO05D000063 8.3e-24 114.4 163 44.8
FAN10G2168 Fragaria x ananassa HOM05D000010 ORTHO05D000063 1.1e-23 114.0 163 44.2
MD07G1073100 Malus domestica HOM05D000010 ORTHO05D000063 1.1e-23 114.0 148 46.6
MD02G1243900 Malus domestica HOM05D000010 ORTHO05D000063 1.8e-23 113.2 149 46.3
Gohir.D04G005800 Gossypium hirsutum HOM05D000010 ORTHO05D000063 3.2e-23 112.5 161 44.1
Gorai.012G007000 Gossypium raimondii HOM05D000010 ORTHO05D000063 4.1e-23 112.1 161 44.1
QL08p053185 Quercus lobata HOM05D000010 ORTHO05D000063 5.4e-23 111.7 167 41.9
Potri.010G229700 Populus trichocarpa HOM05D000010 ORTHO05D000063 9.2e-23 110.9 168 42.3
Sabra10G0178200 Salix brachista HOM05D000010 ORTHO05D000063 1.6e-22 110.2 166 41.6
Gohir.A05G409600 Gossypium hirsutum HOM05D000010 ORTHO05D000063 2.0e-22 109.8 161 43.5
Manes.10G052301 Manihot esculenta HOM05D000010 ORTHO05D000063 4.5e-22 108.6 169 39.1
COL.COLO4_32901 Corchorus olitorius HOM05D000010 ORTHO05D000063 5.0e-21 105.1 161 41.0
Prupe.2G091300 Prunus persica HOM05D000010 ORTHO05D000063 8.6e-21 104.4 147 43.5
QL06p000192 Quercus lobata HOM05D000010 ORTHO05D000063 8.6e-21 104.4 160 41.2
QL06p000304 Quercus lobata HOM05D000010 ORTHO05D000063 1.9e-20 103.2 160 40.6
Gorai.009G309300 Gossypium raimondii HOM05D000010 ORTHO05D000063 3.3e-20 102.4 163 41.7
CiPaw.02G170500 Carya illinoinensis HOM05D000010 ORTHO05D000063 5.6e-20 101.7 171 38.6
Glyma.20G192500 Glycine max HOM05D000010 ORTHO05D000063 8.0e-19 97.8 150 42.7
Hund22316 Selenicereus undatus HOM05D000010 ORTHO05D000063 8.0e-19 97.8 156 40.4
Haze_16768 Corylus avellana HOM05D000010 ORTHO05D000063 1.0e-18 97.4 147 41.5
Glyma.10G197500 Glycine max HOM05D000010 ORTHO05D000063 1.0e-18 97.4 151 43.7
MELO3C012391.2 Cucumis melo HOM05D000010 ORTHO05D000063 1.8e-18 96.7 163 44.2
CsaV3_5G035870 Cucumis sativus L. HOM05D000010 ORTHO05D000063 1.8e-18 96.7 163 44.2
Atru.chr12.892 Acer truncatum HOM05D000010 ORTHO05D000063 2.3e-18 96.3 165 37.0
ClCG05G021370 Citrullus lanatus HOM05D000010 ORTHO05D000063 4.0e-18 95.5 163 44.2
Lalb_Chr21g0312951 Lupinus albus HOM05D000010 ORTHO05D000063 6.8e-18 94.7 148 42.6
Rhsim03G0112100 Rhododendron simsii HOM05D000010 ORTHO05D000063 8.9e-18 94.4 157 39.5
Lalb_Chr06g0169941 Lupinus albus HOM05D000010 ORTHO05D000063 1.5e-17 93.6 153 41.8
VMungo0720G0509 Vigna mungo HOM05D000010 ORTHO05D000063 1.5e-17 93.6 154 42.9
arahy.Tifrunner.gnm1.ann1.2I3PJC Arachis hypogaea HOM05D000010 ORTHO05D000063 2.0e-17 93.2 165 38.8
Lalb_Chr02g0151051 Lupinus albus HOM05D000010 ORTHO05D000063 2.0e-17 93.2 151 43.0
Sed0002017 Sechium edule HOM05D000010 ORTHO05D000063 3.4e-17 92.4 164 41.5
arahy.Tifrunner.gnm1.ann1.A3J7SX Arachis hypogaea HOM05D000010 ORTHO05D000063 5.8e-17 91.7 165 38.2
Medtr1g090720 Medicago truncatula HOM05D000010 ORTHO05D000063 5.8e-17 91.7 173 35.8
Lj5g0009164 Lotus japonicus HOM05D000010 ORTHO05D000063 9.8e-17 90.9 147 44.9
EL10As9g23928 Beta vulgaris HOM05D000010 ORTHO05D000063 1.3e-16 90.5 147 40.1
Gohir.D05G292900 Gossypium hirsutum HOM05D000010 ORTHO05D000063 1.3e-16 90.5 166 39.2
TWI15G1190 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 1.3e-16 90.5 164 39.0
CSS0041539 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000063 2.9e-16 89.4 159 38.4
AUR62043491 Chenopodium quinoa HOM05D000010 ORTHO05D000063 2.9e-16 89.4 156 37.8
AUR62043741 Chenopodium quinoa HOM05D000010 ORTHO05D000063 2.9e-16 89.4 156 37.8
Sed0026858 Sechium edule HOM05D000010 ORTHO05D000063 3.7e-16 89.0 171 40.9
Dinv36368 Davidia involucrata HOM05D000010 ORTHO05D000063 4.9e-16 88.6 155 38.1
TWI38G1360 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 6.4e-16 88.2 162 37.0
Ca_10448_v3 Cicer arietinum L. HOM05D000010 ORTHO05D000063 1.1e-15 87.4 171 36.8
Actinidia18549 Actinidia chinensis HOM05D000010 ORTHO05D000063 1.9e-15 86.7 146 39.7
Oeu015067.2 Olea europaea HOM05D000010 ORTHO05D000063 1.9e-15 86.7 162 37.7
Phvul.007G140332 Phaseolus vulgaris HOM05D000010 ORTHO05D000063 2.4e-15 86.3 151 39.7
Psat6g171320 Pisum sativum HOM05D000010 ORTHO05D000063 4.1e-15 85.5 166 38.6
CANSAT56G0498 Cannabis sativa HOM05D000010 ORTHO05D000063 5.4e-15 85.1 90 51.1
Ah.06g187340 Amaranthus hybridus HOM05D000010 ORTHO05D000063 7.0e-15 84.7 146 38.4
Dinv31251 Davidia involucrata HOM05D000010 ORTHO05D000063 7.0e-15 84.7 155 34.8
Hma1.2p1_1040F.1_g250940 Hydrangea macrophylla HOM05D000010 ORTHO05D000063 7.0e-15 84.7 152 38.2
Actinidia38885 Actinidia chinensis HOM05D000010 ORTHO05D000063 9.2e-15 84.3 156 35.9
MSTRG.9135 Avicennia marina HOM05D000010 ORTHO05D000063 9.2e-15 84.3 150 37.3
vmacro07195 Vaccinium macrocarpon HOM05D000010 ORTHO05D000063 1.2e-14 84.0 158 38.0
vmacro10257 Vaccinium macrocarpon HOM05D000010 ORTHO05D000063 2.7e-14 82.8 157 36.3
Actinidia34794 Actinidia chinensis HOM05D000010 ORTHO05D000063 4.6e-14 82.0 156 35.3
CSS0031630 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000063 4.6e-14 82.0 161 36.0
Sc09g0005890 Simmondsia chinensis HOM05D000010 ORTHO05D000063 6.0e-14 81.6 150 39.3
Lsat_1_v5_gn_8_17420 Lactuca sativa HOM05D000010 ORTHO05D000063 1.7e-13 80.1 152 33.6
Oeu060295.2 Olea europaea HOM05D000010 ORTHO05D000063 1.7e-13 80.1 158 34.8
Rhsim09G0145900 Rhododendron simsii HOM05D000010 ORTHO05D000063 1.7e-13 80.1 155 34.8
Ah.04g163520 Amaranthus hybridus HOM05D000010 ORTHO05D000063 3.0e-13 79.3 157 34.4
PGSC0003DMG400031072 Solanum tuberosum HOM05D000010 ORTHO05D000063 3.0e-13 79.3 156 35.9
MSTRG.27499 Avicennia marina HOM05D000010 ORTHO05D000063 8.6e-13 77.8 152 36.2
BcaNung07211 Brassica carinata HOM05D000010 ORTHO05D000063 8.6e-13 77.8 160 35.0
BolC1t05393H Brassica oleracea HOM05D000010 ORTHO05D000063 8.6e-13 77.8 160 34.4
Cc02_g10640 Coffea canephora HOM05D000010 ORTHO05D000063 1.5e-12 77.0 154 36.4
Peaxi162Scf01105g00015 Petunia axillaris HOM05D000010 ORTHO05D000063 1.5e-12 77.0 153 35.9
TPR.G37837 Trifolium pratense HOM05D000010 ORTHO05D000063 2.5e-12 76.3 158 34.8
HanXRQChr08g0218211 Helianthus annuus HOM05D000010 ORTHO05D000063 3.3e-12 75.9 138 37.0
Nitab4.5_0002692g0030 Nicotiana tabacum HOM05D000010 ORTHO05D000063 3.3e-12 75.9 145 35.9
Oeu016293.1 Olea europaea HOM05D000010 ORTHO05D000063 3.3e-12 75.9 141 39.0
DCAR_019076 Daucus carota HOM05D000010 ORTHO05D000063 5.6e-12 75.1 161 32.9
Ciclev10031606m.g Citrus clementina HOM05D000010 ORTHO05D000063 7.3e-12 74.7 169 31.4
Gohir.A05G291800 Gossypium hirsutum HOM05D000010 ORTHO05D000063 7.3e-12 74.7 157 36.9
Nitab4.5_0000096g0240 Nicotiana tabacum HOM05D000010 ORTHO05D000063 7.3e-12 74.7 145 35.9
Nitab4.5_0002717g0020 Nicotiana tabacum HOM05D000010 ORTHO05D000063 7.3e-12 74.7 148 35.8
Peaxi162Scf00176g01638 Petunia axillaris HOM05D000010 ORTHO05D000063 7.3e-12 74.7 143 35.0
Sopen11g003870 Solanum pennellii HOM05D000010 ORTHO05D000063 9.5e-12 74.3 152 34.9
ECA233G2098 Erigeron canadensis HOM05D000010 ORTHO05D000063 1.6e-11 73.6 137 35.8
Lj2A23T71 Lonicera japonica HOM05D000010 ORTHO05D000063 1.6e-11 73.6 92 46.7
Solyc11g008010.2 Solanum lycopersicum HOM05D000010 ORTHO05D000063 3.6e-11 72.4 152 34.2
Lj3C936T6 Lonicera japonica HOM05D000010 ORTHO05D000063 6.2e-11 71.6 136 36.8
Sc20g0001550 Simmondsia chinensis HOM05D000010 ORTHO05D000063 8.0e-11 71.2 133 36.8
HanXRQChr14g0455801 Helianthus annuus HOM05D000010 ORTHO05D000063 1.1e-10 70.9 143 33.6
Oeu005290.1 Olea europaea HOM05D000010 ORTHO05D000063 1.1e-10 70.9 133 36.1
Solyc05g055480.3 Solanum lycopersicum HOM05D000010 ORTHO05D000063 1.4e-10 70.5 121 39.7
Sopen05g033930 Solanum pennellii HOM05D000010 ORTHO05D000063 1.4e-10 70.5 168 35.7
CAN.G1891.1 Capsicum annuum HOM05D000010 ORTHO05D000063 1.8e-10 70.1 154 34.4
DCAR_006395 Daucus carota HOM05D000010 ORTHO05D000063 1.8e-10 70.1 154 35.1
THA.LOC104816443 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 1.8e-10 70.1 177 30.5
Lsat_1_v5_gn_2_103401 Lactuca sativa HOM05D000010 ORTHO05D000063 3.1e-10 69.3 146 33.6
Lsat_1_v5_gn_9_71421 Lactuca sativa HOM05D000010 ORTHO05D000063 3.1e-10 69.3 154 33.1
PGSC0003DMG401023373 Solanum tuberosum HOM05D000010 ORTHO05D000063 5.2e-10 68.6 136 36.0
AL3G21870 Arabidopsis lyrata HOM05D000010 ORTHO05D000063 1.5e-09 67.0 92 43.5
AL3G21880 Arabidopsis lyrata HOM05D000010 ORTHO05D000063 1.5e-09 67.0 90 40.0
AT3G10490 Arabidopsis thaliana HOM05D000010 ORTHO05D000063 3.4e-09 65.9 93 40.9
CAN.G459.19 Capsicum annuum HOM05D000010 ORTHO05D000063 3.4e-09 65.9 148 35.1
HanXRQChr11g0336051 Helianthus annuus HOM05D000010 ORTHO05D000063 7.5e-09 64.7 143 31.5
TWI63G1510 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 1.3e-08 63.9 134 32.1
ECA238G0645 Erigeron canadensis HOM05D000010 ORTHO05D000063 2.2e-08 63.2 143 35.7
Carub.0003s0972 Capsella rubella HOM05D000010 ORTHO05D000063 2.9e-08 62.8 157 30.6
Lsat_1_v5_gn_6_100121 Lactuca sativa HOM05D000010 ORTHO05D000063 2.9e-08 62.8 143 30.1
Lsat_1_v5_gn_6_99940 Lactuca sativa HOM05D000010 ORTHO05D000063 2.9e-08 62.8 143 30.1
Carub.0003s0973 Capsella rubella HOM05D000010 ORTHO05D000063 4.9e-08 62.0 91 38.5
Sp3g08740 Schrenkiella parvula HOM05D000010 ORTHO05D000063 6.4e-08 61.6 90 36.7
A01p41750 Brassica napus HOM05D000010 ORTHO05D000063 8.3e-08 61.2 101 34.7
BolC1t05392H Brassica oleracea HOM05D000010 ORTHO05D000063 8.3e-08 61.2 148 31.1
BraA01t04250Z Brassica rapa HOM05D000010 ORTHO05D000063 8.3e-08 61.2 101 34.7
Migut.F01688 Erythranthe guttata HOM05D000010 ORTHO05D000063 8.3e-08 61.2 136 34.6
Migut.F01914 Erythranthe guttata HOM05D000010 ORTHO05D000063 8.3e-08 61.2 76 39.5
A01p41740 Brassica napus HOM05D000010 ORTHO05D000063 1.1e-07 60.8 94 36.2
BraA01t04249Z Brassica rapa HOM05D000010 ORTHO05D000063 1.1e-07 60.8 94 36.2
AT3G10480 Arabidopsis thaliana HOM05D000010 ORTHO05D000063 2.4e-07 59.7 91 39.6
A05p38690 Brassica napus HOM05D000010 ORTHO05D000063 3.2e-07 59.3 107 33.6
BraA05t22660Z Brassica rapa HOM05D000010 ORTHO05D000063 3.2e-07 59.3 107 33.6
THA.LOC104823198 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 4.1e-07 58.9 106 35.8
BcaC05g29459 Brassica carinata HOM05D000010 ORTHO05D000063 7.1e-07 58.2 93 36.6
C05p57560 Brassica napus HOM05D000010 ORTHO05D000063 7.1e-07 58.2 93 36.6
BolC5t34413H Brassica oleracea HOM05D000010 ORTHO05D000063 7.1e-07 58.2 93 36.6
CARHR085000 Cardamine hirsuta HOM05D000010 ORTHO05D000063 7.1e-07 58.2 162 30.9
BcaNung07212 Brassica carinata HOM05D000010 ORTHO05D000063 9.2e-07 57.8 107 31.8
Sp3g08750 Schrenkiella parvula HOM05D000010 ORTHO05D000063 9.2e-07 57.8 93 34.4
BcaB04g18595 Brassica carinata HOM05D000010 ORTHO05D000063 1.6e-06 57.0 90 36.7
unitig_0.g2616 Utricularia gibba HOM05D000010 ORTHO05D000063 1.6e-06 57.0 55 50.9
PGR142G3149 Punica granatum HOM05D000010 ORTHO05D000063 2.7e-06 56.2 58 39.7
BcaC01g04178 Brassica carinata HOM05D000010 ORTHO05D000063 4.6e-06 55.5 90 37.8
C03p44220 Brassica napus HOM05D000010 ORTHO05D000063 4.6e-06 55.5 90 37.8
A03p36600 Brassica napus HOM05D000010 ORTHO05D000063 7.8e-06 54.7 90 37.8


User provided reference genes

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