Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02186 Eucalyptus grandis HOM05D005899 ORTHO05D007445 8.4e-179 630.2 304 100.0
Eucgr.B01712 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.0e-107 394.0 293 69.3
Eucgr.L01763 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.4e-96 357.1 301 59.1
Eucgr.B01710 Eucalyptus grandis HOM05D005899 ORTHO05D007445 9.5e-90 334.3 293 62.5
CiPaw.07G006200 Carya illinoinensis HOM05D005899 ORTHO05D007445 1.3e-83 313.9 294 52.7
Cfa006459 Carpinus fangiana HOM05D005899 ORTHO05D007445 8.6e-83 311.2 294 53.7
Sed0018425 Sechium edule HOM05D005899 ORTHO05D007445 1.6e-81 307.0 293 52.9
QL03p024530 Quercus lobata HOM05D005899 ORTHO05D007445 2.1e-81 306.6 296 52.0
CARHR079150 Cardamine hirsuta HOM05D005899 ORTHO05D007445 2.8e-81 306.2 298 52.0
arahy.Tifrunner.gnm1.ann1.41KAT0 Arachis hypogaea HOM05D005899 ORTHO05D007445 8.1e-81 304.7 300 51.7
AT3G04880 Arabidopsis thaliana HOM05D005899 ORTHO05D007445 2.3e-80 303.1 312 50.3
Psat0s62g0080 Pisum sativum HOM05D005899 ORTHO05D007445 5.2e-80 302.0 301 51.8
RcHm_v2.0_Chr3g0451931 Rosa chinensis HOM05D005899 ORTHO05D007445 5.2e-80 302.0 298 51.7
Lalb_Chr15g0076871 Lupinus albus HOM05D005899 ORTHO05D007445 2.6e-79 299.7 294 52.4
TPR.G6971 Trifolium pratense HOM05D005899 ORTHO05D007445 3.4e-79 299.3 294 51.7
VMungo0540G1799 Vigna mungo HOM05D005899 ORTHO05D007445 5.8e-79 298.5 298 52.3
PGR083G2155 Punica granatum HOM05D005899 ORTHO05D007445 7.6e-79 298.1 297 49.8
Medtr7g114750 Medicago truncatula HOM05D005899 ORTHO05D007445 1.3e-78 297.4 293 51.5
C05p62440 Brassica napus HOM05D005899 ORTHO05D007445 1.7e-78 297.0 312 50.0
Glyma.19G243000 Glycine max HOM05D005899 ORTHO05D007445 2.9e-78 296.2 298 51.0
THA.LOC104802822 Tarenaya hassleriana HOM05D005899 ORTHO05D007445 3.7e-78 295.8 300 49.7
FvH4_6g03430 Fragaria vesca HOM05D005899 ORTHO05D007445 8.3e-78 294.7 295 51.2
Thecc.05G288500 Theobroma cacao HOM05D005899 ORTHO05D007445 8.3e-78 294.7 297 50.8
Phvul.006G099800 Phaseolus vulgaris HOM05D005899 ORTHO05D007445 1.9e-77 293.5 298 52.3
BcaB03g11648 Brassica carinata HOM05D005899 ORTHO05D007445 2.4e-77 293.1 294 51.4
Prupe.6G339900 Prunus persica HOM05D005899 ORTHO05D007445 2.4e-77 293.1 301 50.8
BraA05t22981Z Brassica rapa HOM05D005899 ORTHO05D007445 3.2e-77 292.7 310 49.7
Ca_09408_v3 Cicer arietinum L. HOM05D005899 ORTHO05D007445 4.1e-77 292.4 298 50.7
Duzib177G0382 Durio zibethinus HOM05D005899 ORTHO05D007445 5.4e-77 292.0 302 49.7
Aa31LG5G15270 Aethionema arabicum HOM05D005899 ORTHO05D007445 7.1e-77 291.6 310 48.7
A05p42720 Brassica napus HOM05D005899 ORTHO05D007445 9.2e-77 291.2 310 49.4
BolC5t34897H Brassica oleracea HOM05D005899 ORTHO05D007445 9.2e-77 291.2 314 49.7
Gohir.A11G255200 Gossypium hirsutum HOM05D005899 ORTHO05D007445 9.2e-77 291.2 301 50.5
Ciclev10001942m.g Citrus clementina HOM05D005899 ORTHO05D007445 1.2e-76 290.8 303 50.2
FAN02G1821 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.6e-76 290.4 295 50.8
Gorai.007G285000 Gossypium raimondii HOM05D005899 ORTHO05D007445 1.6e-76 290.4 301 50.2
Gohir.D11G264900 Gossypium hirsutum HOM05D005899 ORTHO05D007445 2.7e-76 289.7 301 50.5
Ciclev10001941m.g Citrus clementina HOM05D005899 ORTHO05D007445 3.5e-76 289.3 303 49.8
MD12G1237200 Malus domestica HOM05D005899 ORTHO05D007445 1.0e-75 287.7 299 50.8
Manes.09G155900 Manihot esculenta HOM05D005899 ORTHO05D007445 1.0e-75 287.7 315 48.9
Sabra15G0068500 Salix brachista HOM05D005899 ORTHO05D007445 1.0e-75 287.7 304 49.7
FAN14G1139 Fragaria x ananassa HOM05D005899 ORTHO05D007445 2.3e-75 286.6 301 49.5
Sp3g03700 Schrenkiella parvula HOM05D005899 ORTHO05D007445 2.3e-75 286.6 308 49.7
Potri.005G050600 Populus trichocarpa HOM05D005899 ORTHO05D007445 3.0e-75 286.2 305 49.2
Duzib128G1862 Durio zibethinus HOM05D005899 ORTHO05D007445 5.1e-75 285.4 293 50.5
TWI56G0091 Tripterygium wilfordii HOM05D005899 ORTHO05D007445 1.5e-74 283.9 305 48.9
TAR362G0589 Trochodendron aralioides HOM05D005899 ORTHO05D007445 3.3e-74 282.7 297 48.8
Lj1g0012490 Lotus japonicus HOM05D005899 ORTHO05D007445 2.1e-73 280.0 292 49.3
Cpa.g.sc117.66 Carica papaya HOM05D005899 ORTHO05D007445 2.8e-73 279.6 303 47.2
CANSAT54G2589 Cannabis sativa HOM05D005899 ORTHO05D007445 4.7e-73 278.9 308 46.8
AUR62000983 Chenopodium quinoa HOM05D005899 ORTHO05D007445 6.2e-73 278.5 291 47.1
HPP92_023141 Vanilla planifolia HOM05D005899 ORTHO05D007445 1.8e-72 276.9 289 49.8
SHI18352 Sapria himalayana HOM05D005899 ORTHO05D007445 2.4e-72 276.6 310 48.7
CSS0047717 Camellia sinensis var. sinensis HOM05D005899 ORTHO05D007445 4.0e-72 275.8 297 47.8
Actinidia05763 Actinidia chinensis HOM05D005899 ORTHO05D007445 6.8e-72 275.0 294 47.3
ATR0681G168 Amborella trichopoda HOM05D005899 ORTHO05D007445 2.0e-71 273.5 296 47.0
PSO761G0524 Papaver somniferum HOM05D005899 ORTHO05D007445 2.0e-71 273.5 296 46.6
SGA_v2.0_scaffold517G52669 Striga asiatica HOM05D005899 ORTHO05D007445 5.8e-71 271.9 292 48.3
FAN05G2237 Fragaria x ananassa HOM05D005899 ORTHO05D007445 7.6e-71 271.6 296 48.3
Lj7P487T33 Lonicera japonica HOM05D005899 ORTHO05D007445 3.8e-70 269.2 294 46.6
MBI01_g13083_MAGBIO Magnolia biondii HOM05D005899 ORTHO05D007445 6.4e-70 268.5 293 47.1
DCAR_006615 Daucus carota HOM05D005899 ORTHO05D007445 1.4e-69 267.3 294 47.6
EL10Ac4g09173 Beta vulgaris HOM05D005899 ORTHO05D007445 3.2e-69 266.2 307 44.3
Migut.N00303 Erythranthe guttata HOM05D005899 ORTHO05D007445 4.2e-69 265.8 309 45.6
Dinv11553 Davidia involucrata HOM05D005899 ORTHO05D007445 2.7e-68 263.1 297 46.1
Nitab4.5_0002361g0040 Nicotiana tabacum HOM05D005899 ORTHO05D007445 2.7e-68 263.1 302 45.0
Os01g0542000 Oryza sativa ssp. japonica HOM05D005899 ORTHO05D007445 2.7e-68 263.1 308 46.8
Oeu064565.1 Olea europaea HOM05D005899 ORTHO05D007445 6.0e-68 261.9 309 46.3
PGSC0003DMG400022509 Solanum tuberosum HOM05D005899 ORTHO05D007445 6.0e-68 261.9 305 45.2
Rhsim07G0131800 Rhododendron simsii HOM05D005899 ORTHO05D007445 7.8e-68 261.5 300 46.3
Cfa006460 Carpinus fangiana HOM05D005899 ORTHO05D007445 1.3e-67 260.8 289 48.4
Solyc01g097800.3 Solanum lycopersicum HOM05D005899 ORTHO05D007445 3.0e-67 259.6 305 44.9
Zm00001eb162780 Zea mays HOM05D005899 ORTHO05D007445 5.1e-67 258.8 301 47.2
Sopen01g041400 Solanum pennellii HOM05D005899 ORTHO05D007445 8.7e-67 258.1 306 44.8
vmacro14199 Vaccinium macrocarpon HOM05D005899 ORTHO05D007445 1.1e-66 257.7 310 45.8
Lsat_1_v5_gn_6_53000 Lactuca sativa HOM05D005899 ORTHO05D007445 1.5e-66 257.3 293 46.4
TPR.G8897 Trifolium pratense HOM05D005899 ORTHO05D007445 3.3e-66 256.1 249 51.4
ECA233G4289 Erigeron canadensis HOM05D005899 ORTHO05D007445 7.3e-66 255.0 294 45.2
HanXRQChr02g0057281 Helianthus annuus HOM05D005899 ORTHO05D007445 7.3e-66 255.0 292 44.9
QL03p024564 Quercus lobata HOM05D005899 ORTHO05D007445 1.6e-65 253.8 297 46.1
Sc13g0006240 Simmondsia chinensis HOM05D005899 ORTHO05D007445 2.1e-65 253.4 303 43.6
AL3G15170 Arabidopsis lyrata HOM05D005899 ORTHO05D007445 3.6e-65 252.7 228 51.8
SMO367G0143 Selaginella moellendorffii HOM05D005899 ORTHO05D007445 1.4e-64 250.8 294 43.9
CDE05G2514 Ceratophyllum demersum HOM05D005899 ORTHO05D007445 1.2e-63 247.7 290 44.1
Cc02_g31760 Coffea canephora HOM05D005899 ORTHO05D007445 1.7e-62 243.8 308 44.2
Oeu044665.1 Olea europaea HOM05D005899 ORTHO05D007445 3.8e-62 242.7 301 43.9
SEGI_33796 Sequoiadendron giganteum HOM05D005899 ORTHO05D007445 3.5e-60 236.1 295 42.4
Eucgr.L02099 Eucalyptus grandis HOM05D005899 ORTHO05D007445 3.0e-59 233.0 198 55.6
Sabra15G0041400 Salix brachista HOM05D005899 ORTHO05D007445 6.2e-57 225.3 304 43.1
Haze_04330 Corylus avellana HOM05D005899 ORTHO05D007445 8.1e-57 224.9 264 44.7
CAN.G134.162 Capsicum annuum HOM05D005899 ORTHO05D007445 2.0e-55 220.3 307 40.7
Atru.chr2.732 Acer truncatum HOM05D005899 ORTHO05D007445 3.8e-54 216.1 236 50.0
Atru.chr2.745 Acer truncatum HOM05D005899 ORTHO05D007445 3.8e-54 216.1 236 50.0
Nn4g26305 Nelumbo nucifera HOM05D005899 ORTHO05D007445 8.4e-54 214.9 237 46.8
Pp3c6_4500 Physcomitrium patens HOM05D005899 ORTHO05D007445 2.4e-53 213.4 418 31.6
Peaxi162Scf00404g00009 Petunia axillaris HOM05D005899 ORTHO05D007445 5.8e-47 192.2 200 47.0
Nitab4.5_0013433g0050 Nicotiana tabacum HOM05D005899 ORTHO05D007445 7.6e-47 191.8 190 47.4
FAN09G0887 Fragaria x ananassa HOM05D005899 ORTHO05D007445 4.9e-46 189.1 307 39.1
Atru.chr2.742 Acer truncatum HOM05D005899 ORTHO05D007445 2.5e-45 186.8 217 49.3
Ah.04g162380 Amaranthus hybridus HOM05D005899 ORTHO05D007445 1.3e-43 181.0 171 48.0
Carub.0003s0407 Capsella rubella HOM05D005899 ORTHO05D007445 7.9e-36 155.2 120 55.0
Actinidia36917 Actinidia chinensis HOM05D005899 ORTHO05D007445 1.9e-34 150.6 200 43.0
Sabra15G0057000 Salix brachista HOM05D005899 ORTHO05D007445 2.5e-34 150.2 145 47.6
Sabra15G0068600 Salix brachista HOM05D005899 ORTHO05D007445 2.5e-34 150.2 145 47.6
BcaNung06538 Brassica carinata HOM05D005899 ORTHO05D007445 4.3e-34 149.4 171 49.7
Sabra15G0056900 Salix brachista HOM05D005899 ORTHO05D007445 9.7e-34 148.3 120 53.3
AUR62004985 Chenopodium quinoa HOM05D005899 ORTHO05D007445 1.3e-33 147.9 246 35.8
FAN05G4786 Fragaria x ananassa HOM05D005899 ORTHO05D007445 2.4e-32 143.7 101 57.4
Dinv12477 Davidia involucrata HOM05D005899 ORTHO05D007445 2.0e-31 140.6 124 49.2
SGA_v2.0_scaffold31G12627 Striga asiatica HOM05D005899 ORTHO05D007445 7.7e-31 138.7 127 48.0
AUR62004976 Chenopodium quinoa HOM05D005899 ORTHO05D007445 6.5e-30 135.6 159 45.3
Medtr8g098320 Medicago truncatula HOM05D005899 ORTHO05D007445 6.5e-30 135.6 198 44.9
unitig_744.g24569 Utricularia gibba HOM05D005899 ORTHO05D007445 5.1e-27 125.9 186 44.1
Cfa006462 Carpinus fangiana HOM05D005899 ORTHO05D007445 2.0e-26 124.0 129 45.0
Medtr7g114730 Medicago truncatula HOM05D005899 ORTHO05D007445 2.6e-23 113.6 160 43.8
FAN05G4109 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.7e-17 94.4 115 52.2
TPR.G21843 Trifolium pratense HOM05D005899 ORTHO05D007445 1.7e-17 94.4 116 50.9
Carub.0003s0408 Capsella rubella HOM05D005899 ORTHO05D007445 7.7e-15 85.5 111 47.7
TAR636G1090 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.0e-11 75.1 99 39.4
PRCOL_00001982 Prasinoderma coloniale HOM05D005899 ORTHO05D007445 8.8e-11 72.0 143 35.0
TAR375G0990 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.8e-09 67.0 103 38.8
TAR140G0002 Trochodendron aralioides HOM05D005899 ORTHO05D007445 6.3e-09 65.9 92 41.3
TAR623G1042 Trochodendron aralioides HOM05D005899 ORTHO05D007445 6.3e-09 65.9 92 41.3
unitig_21.g20175 Utricularia gibba HOM05D005899 ORTHO05D007445 7.0e-08 62.4 70 42.9
RcHm_v2.0_Chr7g0217791 Rosa chinensis HOM05D005899 ORTHO05D007445 7.7e-07 58.9 138 30.4
TAR625G0400 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.3e-06 58.2 80 40.0


User provided reference genes

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