Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02099 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.4e-113 412.9 198 100.0
Eucgr.L01763 Eucalyptus grandis HOM05D005899 ORTHO05D007445 4.9e-103 377.9 198 93.4
CiPaw.07G006200 Carya illinoinensis HOM05D005899 ORTHO05D007445 6.9e-81 304.3 199 73.4
Medtr7g114750 Medicago truncatula HOM05D005899 ORTHO05D007445 9.0e-81 303.9 198 72.2
Cfa006459 Carpinus fangiana HOM05D005899 ORTHO05D007445 3.4e-80 302.0 199 72.9
QL03p024530 Quercus lobata HOM05D005899 ORTHO05D007445 3.8e-79 298.5 198 70.7
Glyma.19G243000 Glycine max HOM05D005899 ORTHO05D007445 7.9e-77 290.8 198 70.7
TPR.G6971 Trifolium pratense HOM05D005899 ORTHO05D007445 7.9e-77 290.8 198 69.7
FvH4_6g03430 Fragaria vesca HOM05D005899 ORTHO05D007445 1.7e-76 289.7 198 69.2
arahy.Tifrunner.gnm1.ann1.41KAT0 Arachis hypogaea HOM05D005899 ORTHO05D007445 2.3e-76 289.3 198 69.7
Ca_09408_v3 Cicer arietinum L. HOM05D005899 ORTHO05D007445 3.0e-76 288.9 198 70.2
MD12G1237200 Malus domestica HOM05D005899 ORTHO05D007445 3.9e-76 288.5 199 70.9
Prupe.6G339900 Prunus persica HOM05D005899 ORTHO05D007445 3.9e-76 288.5 202 68.8
PGR083G2155 Punica granatum HOM05D005899 ORTHO05D007445 3.9e-76 288.5 198 69.2
Psat0s62g0080 Pisum sativum HOM05D005899 ORTHO05D007445 3.3e-75 285.4 198 69.2
CARHR079150 Cardamine hirsuta HOM05D005899 ORTHO05D007445 4.3e-75 285.0 204 66.7
RcHm_v2.0_Chr3g0451931 Rosa chinensis HOM05D005899 ORTHO05D007445 7.3e-75 284.3 198 69.2
VMungo0540G1799 Vigna mungo HOM05D005899 ORTHO05D007445 9.6e-75 283.9 198 69.2
AL3G15170 Arabidopsis lyrata HOM05D005899 ORTHO05D007445 2.8e-74 282.3 205 65.9
Lalb_Chr15g0076871 Lupinus albus HOM05D005899 ORTHO05D007445 2.8e-74 282.3 199 66.8
Aa31LG5G15270 Aethionema arabicum HOM05D005899 ORTHO05D007445 4.8e-74 281.6 204 65.7
Phvul.006G099800 Phaseolus vulgaris HOM05D005899 ORTHO05D007445 6.2e-74 281.2 198 69.2
FAN02G1821 Fragaria x ananassa HOM05D005899 ORTHO05D007445 8.1e-74 280.8 198 68.7
FAN14G1139 Fragaria x ananassa HOM05D005899 ORTHO05D007445 8.1e-74 280.8 198 67.7
CANSAT54G2589 Cannabis sativa HOM05D005899 ORTHO05D007445 2.4e-73 279.3 198 68.7
Sed0018425 Sechium edule HOM05D005899 ORTHO05D007445 4.0e-73 278.5 199 66.8
Sp3g03700 Schrenkiella parvula HOM05D005899 ORTHO05D007445 9.0e-73 277.3 201 66.2
Ciclev10001941m.g Citrus clementina HOM05D005899 ORTHO05D007445 1.2e-72 276.9 200 67.5
AT3G04880 Arabidopsis thaliana HOM05D005899 ORTHO05D007445 3.4e-72 275.4 205 64.9
BraA05t22981Z Brassica rapa HOM05D005899 ORTHO05D007445 4.5e-72 275.0 202 65.3
Lj1g0012490 Lotus japonicus HOM05D005899 ORTHO05D007445 4.5e-72 275.0 198 67.7
Thecc.05G288500 Theobroma cacao HOM05D005899 ORTHO05D007445 9.9e-72 273.9 198 66.2
A05p42720 Brassica napus HOM05D005899 ORTHO05D007445 1.3e-71 273.5 203 65.0
C05p62440 Brassica napus HOM05D005899 ORTHO05D007445 1.3e-71 273.5 202 65.3
Manes.09G155900 Manihot esculenta HOM05D005899 ORTHO05D007445 1.7e-71 273.1 201 64.7
Potri.005G050600 Populus trichocarpa HOM05D005899 ORTHO05D007445 2.9e-71 272.3 205 62.9
Ciclev10001942m.g Citrus clementina HOM05D005899 ORTHO05D007445 3.8e-71 271.9 200 66.0
BcaB03g11648 Brassica carinata HOM05D005899 ORTHO05D007445 4.9e-71 271.6 198 65.2
Duzib177G0382 Durio zibethinus HOM05D005899 ORTHO05D007445 4.9e-71 271.6 198 65.7
THA.LOC104802822 Tarenaya hassleriana HOM05D005899 ORTHO05D007445 6.4e-71 271.2 204 61.3
BolC5t34897H Brassica oleracea HOM05D005899 ORTHO05D007445 1.1e-70 270.4 202 64.9
Sabra15G0068500 Salix brachista HOM05D005899 ORTHO05D007445 1.4e-70 270.0 204 62.7
Duzib128G1862 Durio zibethinus HOM05D005899 ORTHO05D007445 7.1e-70 267.7 198 65.7
Actinidia05763 Actinidia chinensis HOM05D005899 ORTHO05D007445 9.3e-70 267.3 198 62.6
Gorai.007G285000 Gossypium raimondii HOM05D005899 ORTHO05D007445 1.2e-69 266.9 198 63.1
TWI56G0091 Tripterygium wilfordii HOM05D005899 ORTHO05D007445 2.1e-69 266.2 208 63.5
Lj7P487T33 Lonicera japonica HOM05D005899 ORTHO05D007445 2.7e-69 265.8 198 61.6
Dinv11553 Davidia involucrata HOM05D005899 ORTHO05D007445 3.5e-69 265.4 198 63.6
CSS0047717 Camellia sinensis var. sinensis HOM05D005899 ORTHO05D007445 4.6e-69 265.0 198 64.1
Gohir.A11G255200 Gossypium hirsutum HOM05D005899 ORTHO05D007445 7.9e-69 264.2 198 62.6
Gohir.D11G264900 Gossypium hirsutum HOM05D005899 ORTHO05D007445 2.3e-68 262.7 198 62.6
TPR.G8897 Trifolium pratense HOM05D005899 ORTHO05D007445 2.3e-68 262.7 199 62.8
Cfa006460 Carpinus fangiana HOM05D005899 ORTHO05D007445 3.0e-68 262.3 198 65.7
Cpa.g.sc117.66 Carica papaya HOM05D005899 ORTHO05D007445 3.9e-68 261.9 200 62.0
DCAR_006615 Daucus carota HOM05D005899 ORTHO05D007445 5.1e-68 261.5 199 63.8
PSO761G0524 Papaver somniferum HOM05D005899 ORTHO05D007445 2.5e-67 259.2 198 60.1
Rhsim07G0131800 Rhododendron simsii HOM05D005899 ORTHO05D007445 5.6e-67 258.1 207 61.8
EL10Ac4g09173 Beta vulgaris HOM05D005899 ORTHO05D007445 7.4e-67 257.7 206 57.3
SGA_v2.0_scaffold517G52669 Striga asiatica HOM05D005899 ORTHO05D007445 4.8e-66 255.0 201 62.2
SHI18352 Sapria himalayana HOM05D005899 ORTHO05D007445 8.1e-66 254.2 199 62.3
HanXRQChr02g0057281 Helianthus annuus HOM05D005899 ORTHO05D007445 1.4e-65 253.4 198 58.1
TAR362G0589 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.4e-65 253.4 198 59.6
ATR0681G168 Amborella trichopoda HOM05D005899 ORTHO05D007445 3.1e-65 252.3 198 61.1
Migut.N00303 Erythranthe guttata HOM05D005899 ORTHO05D007445 4.0e-65 251.9 204 61.3
FAN05G2237 Fragaria x ananassa HOM05D005899 ORTHO05D007445 4.0e-65 251.9 198 64.1
PGSC0003DMG400022509 Solanum tuberosum HOM05D005899 ORTHO05D007445 5.3e-65 251.5 199 61.3
vmacro14199 Vaccinium macrocarpon HOM05D005899 ORTHO05D007445 1.2e-64 250.4 213 59.2
Nitab4.5_0002361g0040 Nicotiana tabacum HOM05D005899 ORTHO05D007445 2.0e-64 249.6 203 58.1
Oeu064565.1 Olea europaea HOM05D005899 ORTHO05D007445 2.0e-64 249.6 205 60.0
HPP92_023141 Vanilla planifolia HOM05D005899 ORTHO05D007445 2.6e-64 249.2 198 59.6
CDE05G2514 Ceratophyllum demersum HOM05D005899 ORTHO05D007445 3.4e-64 248.8 198 58.1
AUR62000983 Chenopodium quinoa HOM05D005899 ORTHO05D007445 3.4e-64 248.8 198 55.1
MBI01_g13083_MAGBIO Magnolia biondii HOM05D005899 ORTHO05D007445 3.4e-64 248.8 198 58.6
Solyc01g097800.3 Solanum lycopersicum HOM05D005899 ORTHO05D007445 3.4e-64 248.8 199 60.8
QL03p024564 Quercus lobata HOM05D005899 ORTHO05D007445 4.5e-64 248.4 198 64.6
Sopen01g041400 Solanum pennellii HOM05D005899 ORTHO05D007445 5.8e-64 248.1 199 60.3
Os01g0542000 Oryza sativa ssp. japonica HOM05D005899 ORTHO05D007445 1.7e-63 246.5 198 59.1
ECA233G4289 Erigeron canadensis HOM05D005899 ORTHO05D007445 2.2e-63 246.1 199 57.3
Oeu044665.1 Olea europaea HOM05D005899 ORTHO05D007445 1.6e-61 240.0 205 58.5
Lsat_1_v5_gn_6_53000 Lactuca sativa HOM05D005899 ORTHO05D007445 1.0e-60 237.3 198 58.6
SMO367G0143 Selaginella moellendorffii HOM05D005899 ORTHO05D007445 1.0e-60 237.3 204 56.4
Zm00001eb162780 Zea mays HOM05D005899 ORTHO05D007445 1.0e-60 237.3 198 57.6
Atru.chr2.732 Acer truncatum HOM05D005899 ORTHO05D007445 6.7e-60 234.6 159 71.1
Atru.chr2.745 Acer truncatum HOM05D005899 ORTHO05D007445 8.7e-60 234.2 157 72.0
Peaxi162Scf00404g00009 Petunia axillaris HOM05D005899 ORTHO05D007445 1.1e-59 233.8 196 58.2
Cc02_g31760 Coffea canephora HOM05D005899 ORTHO05D007445 3.3e-59 232.3 201 56.7
Sc13g0006240 Simmondsia chinensis HOM05D005899 ORTHO05D007445 5.7e-59 231.5 198 55.1
Eucgr.L02186 Eucalyptus grandis HOM05D005899 ORTHO05D007445 9.6e-59 230.7 198 55.6
SEGI_33796 Sequoiadendron giganteum HOM05D005899 ORTHO05D007445 2.1e-58 229.6 198 54.5
Nn4g26305 Nelumbo nucifera HOM05D005899 ORTHO05D007445 4.8e-58 228.4 162 62.3
Eucgr.B01712 Eucalyptus grandis HOM05D005899 ORTHO05D007445 6.9e-57 224.6 198 57.1
Haze_04330 Corylus avellana HOM05D005899 ORTHO05D007445 2.5e-51 206.1 198 54.5
Nitab4.5_0013433g0050 Nicotiana tabacum HOM05D005899 ORTHO05D007445 1.3e-50 203.8 165 58.2
Sabra15G0041400 Salix brachista HOM05D005899 ORTHO05D007445 2.6e-48 196.1 204 51.5
Atru.chr2.742 Acer truncatum HOM05D005899 ORTHO05D007445 4.5e-48 195.3 155 64.5
CAN.G134.162 Capsicum annuum HOM05D005899 ORTHO05D007445 1.0e-47 194.1 199 51.8
Pp3c6_4500 Physcomitrium patens HOM05D005899 ORTHO05D007445 6.1e-45 184.9 316 35.1
FAN09G0887 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.1e-43 180.6 136 65.4
Ah.04g162380 Amaranthus hybridus HOM05D005899 ORTHO05D007445 1.7e-42 176.8 141 53.9
Eucgr.B01710 Eucalyptus grandis HOM05D005899 ORTHO05D007445 9.1e-41 171.0 198 48.5
Carub.0003s0407 Capsella rubella HOM05D005899 ORTHO05D007445 7.7e-40 167.9 105 72.4
AUR62004985 Chenopodium quinoa HOM05D005899 ORTHO05D007445 9.4e-38 161.0 153 51.0
Sabra15G0057000 Salix brachista HOM05D005899 ORTHO05D007445 6.7e-36 154.8 121 62.0
Sabra15G0068600 Salix brachista HOM05D005899 ORTHO05D007445 6.7e-36 154.8 121 62.0
Dinv12477 Davidia involucrata HOM05D005899 ORTHO05D007445 1.5e-35 153.7 115 64.3
Actinidia36917 Actinidia chinensis HOM05D005899 ORTHO05D007445 9.7e-35 151.0 126 54.8
Sabra15G0056900 Salix brachista HOM05D005899 ORTHO05D007445 9.7e-35 151.0 103 68.0
Cfa006462 Carpinus fangiana HOM05D005899 ORTHO05D007445 6.5e-31 138.3 116 60.3
FAN05G4786 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.0e-28 131.0 78 76.9
Medtr8g098320 Medicago truncatula HOM05D005899 ORTHO05D007445 1.3e-26 124.0 87 64.4
SGA_v2.0_scaffold31G12627 Striga asiatica HOM05D005899 ORTHO05D007445 2.8e-26 122.9 103 54.4
BcaNung06538 Brassica carinata HOM05D005899 ORTHO05D007445 5.3e-25 118.6 87 63.2
unitig_744.g24569 Utricularia gibba HOM05D005899 ORTHO05D007445 7.0e-25 118.2 108 54.6
Medtr7g114730 Medicago truncatula HOM05D005899 ORTHO05D007445 5.9e-24 115.2 87 57.5
AUR62004976 Chenopodium quinoa HOM05D005899 ORTHO05D007445 2.7e-21 106.3 87 50.6
TAR636G1090 Trochodendron aralioides HOM05D005899 ORTHO05D007445 6.3e-18 95.1 102 47.1
TAR140G0002 Trochodendron aralioides HOM05D005899 ORTHO05D007445 8.3e-18 94.7 102 47.1
TAR623G1042 Trochodendron aralioides HOM05D005899 ORTHO05D007445 8.3e-18 94.7 102 47.1
TAR375G0990 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.2e-16 90.9 103 47.6
RcHm_v2.0_Chr7g0217791 Rosa chinensis HOM05D005899 ORTHO05D007445 1.6e-16 90.5 122 45.1
unitig_21.g20175 Utricularia gibba HOM05D005899 ORTHO05D007445 4.5e-16 89.0 78 57.7
TAR625G0400 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.5e-11 73.9 87 43.7
FAN05G4109 Fragaria x ananassa HOM05D005899 ORTHO05D007445 8.3e-10 68.2 87 44.8
TPR.G21843 Trifolium pratense HOM05D005899 ORTHO05D007445 1.1e-09 67.8 45 73.3
TAR375G0306 Trochodendron aralioides HOM05D005899 ORTHO05D007445 8.6e-07 58.2 43 65.1
FvH4_7g17710 Fragaria vesca HOM05D005899 ORTHO05D045384 9.5e-06 54.7 57 49.1


User provided reference genes

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