Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 4.7e-42 174.1 86 100.0
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.9e-35 152.1 74 98.6
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 4.2e-35 151.0 74 97.3
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 1.1e-27 126.3 74 81.1
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 3.1e-22 108.2 70 70.0
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 3.5e-21 104.8 74 62.2
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 1.9e-19 99.0 74 62.2
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 2.5e-19 98.6 77 59.7
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 4.2e-19 97.8 68 66.2
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 5.5e-19 97.4 79 55.7
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 7.2e-19 97.1 77 57.1
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 7.2e-19 97.1 74 59.5
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 9.4e-19 96.7 74 62.2
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 1.2e-18 96.3 74 55.4
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 1.2e-18 96.3 74 59.5
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 6.1e-18 94.0 74 59.5
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 8.0e-18 93.6 66 62.1
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 1.0e-17 93.2 71 59.2
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 1.4e-17 92.8 68 61.8
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 1.4e-17 92.8 74 59.5
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 1.8e-17 92.4 79 55.7
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 3.0e-17 91.7 64 65.6
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 4.0e-17 91.3 80 52.5
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 4.0e-17 91.3 74 52.7
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 4.0e-17 91.3 74 58.1
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 4.0e-17 91.3 74 58.1
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 6.8e-17 90.5 74 54.1
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 6.8e-17 90.5 74 54.1
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 6.8e-17 90.5 74 58.1
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 6.8e-17 90.5 82 54.9
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 6.8e-17 90.5 82 54.9
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 6.8e-17 90.5 64 60.9
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 8.8e-17 90.1 77 53.2
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 8.8e-17 90.1 67 61.2
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 8.8e-17 90.1 67 61.2
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 1.2e-16 89.7 74 54.1
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 1.2e-16 89.7 68 57.4
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 1.5e-16 89.4 72 55.6
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 1.5e-16 89.4 72 52.8
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 2.0e-16 89.0 64 59.4
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 2.0e-16 89.0 74 56.8
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 2.6e-16 88.6 68 57.4
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 2.6e-16 88.6 64 56.2
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 2.6e-16 88.6 74 56.8
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.6e-16 88.6 67 59.7
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.6e-16 88.6 67 59.7
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 3.4e-16 88.2 74 56.8
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 3.4e-16 88.2 72 52.8
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 4.4e-16 87.8 74 55.4
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 4.4e-16 87.8 82 53.7
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 9.8e-16 86.7 66 59.1
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 2.2e-15 85.5 66 59.1
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 2.8e-15 85.1 58 62.1
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 2.8e-15 85.1 58 62.1
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 3.7e-15 84.7 71 52.1
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 6.3e-15 84.0 65 53.8
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 6.3e-15 84.0 65 53.8
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 8.3e-15 83.6 66 59.1
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 8.3e-15 83.6 65 53.8
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 8.3e-15 83.6 64 53.1
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 1.4e-14 82.8 68 51.5
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 1.4e-14 82.8 62 58.1
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 1.8e-14 82.4 66 57.6
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 2.4e-14 82.0 64 59.4
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 3.1e-14 81.6 66 56.1
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 3.1e-14 81.6 66 56.1
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 4.1e-14 81.3 66 54.5
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 4.1e-14 81.3 66 56.1
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 4.1e-14 81.3 66 56.1
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 4.1e-14 81.3 66 56.1
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 4.1e-14 81.3 66 56.1
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 4.1e-14 81.3 66 57.6
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 4.1e-14 81.3 63 60.3
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 5.4e-14 80.9 66 56.1
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 5.4e-14 80.9 66 56.1
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 5.4e-14 80.9 66 56.1
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 7.0e-14 80.5 66 57.6
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 7.0e-14 80.5 67 59.7
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 9.1e-14 80.1 66 54.5
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 9.1e-14 80.1 66 56.1
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 1.2e-13 79.7 66 54.5
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 1.2e-13 79.7 66 54.5
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 1.2e-13 79.7 79 49.4
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 1.2e-13 79.7 54 63.0
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 1.2e-13 79.7 60 55.0
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 1.6e-13 79.3 62 56.5
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 3.5e-13 78.2 73 52.1
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 4.5e-13 77.8 62 58.1
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 4.5e-13 77.8 62 58.1
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 4.5e-13 77.8 62 58.1
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 5.9e-13 77.4 51 66.7
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 5.9e-13 77.4 60 56.7
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 5.9e-13 77.4 66 54.5
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 5.9e-13 77.4 74 52.7
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 1.3e-12 76.3 54 59.3
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 1.7e-12 75.9 79 49.4
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 8.6e-12 73.6 66 51.5
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 1.1e-11 73.2 58 51.7
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 1.1e-11 73.2 60 58.3
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 1.5e-11 72.8 60 53.3
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 1.9e-11 72.4 74 47.3
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 2.1e-10 68.9 53 52.8
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 3.6e-10 68.2 72 43.1
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 8.0e-10 67.0 58 50.0
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 1.0e-09 66.6 71 47.9
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 1.4e-09 66.2 69 43.5
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.4e-09 66.2 53 54.7
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 2.3e-09 65.5 51 54.9
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 5.2e-09 64.3 57 52.6
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 2.0e-08 62.4 64 45.3
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 7.5e-08 60.5 72 41.7
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 3.7e-07 58.2 40 60.0
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.4e-06 56.2 36 69.4


User provided reference genes

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