Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01763 Eucalyptus grandis HOM05D005899 ORTHO05D007445 2.1e-180 635.6 313 100.0
CiPaw.07G006200 Carya illinoinensis HOM05D005899 ORTHO05D007445 3.0e-131 472.2 302 75.8
Cfa006459 Carpinus fangiana HOM05D005899 ORTHO05D007445 6.7e-131 471.1 307 75.9
Medtr7g114750 Medicago truncatula HOM05D005899 ORTHO05D007445 3.1e-128 462.2 301 74.4
QL03p024530 Quercus lobata HOM05D005899 ORTHO05D007445 3.4e-127 458.8 305 72.5
PGR083G2155 Punica granatum HOM05D005899 ORTHO05D007445 7.7e-127 457.6 298 74.8
Glyma.19G243000 Glycine max HOM05D005899 ORTHO05D007445 1.3e-126 456.8 298 73.8
arahy.Tifrunner.gnm1.ann1.41KAT0 Arachis hypogaea HOM05D005899 ORTHO05D007445 3.8e-126 455.3 301 73.8
FvH4_6g03430 Fragaria vesca HOM05D005899 ORTHO05D007445 6.5e-126 454.5 300 74.0
RcHm_v2.0_Chr3g0451931 Rosa chinensis HOM05D005899 ORTHO05D007445 8.5e-126 454.1 296 75.0
TPR.G6971 Trifolium pratense HOM05D005899 ORTHO05D007445 1.4e-125 453.4 294 74.5
Psat0s62g0080 Pisum sativum HOM05D005899 ORTHO05D007445 2.5e-125 452.6 296 73.6
Prupe.6G339900 Prunus persica HOM05D005899 ORTHO05D007445 2.1e-124 449.5 312 71.5
VMungo0540G1799 Vigna mungo HOM05D005899 ORTHO05D007445 4.7e-124 448.4 298 73.8
Ca_09408_v3 Cicer arietinum L. HOM05D005899 ORTHO05D007445 3.0e-123 445.7 302 72.5
FAN02G1821 Fragaria x ananassa HOM05D005899 ORTHO05D007445 5.1e-123 444.9 296 74.0
MD12G1237200 Malus domestica HOM05D005899 ORTHO05D007445 8.8e-123 444.1 309 71.8
CANSAT54G2589 Cannabis sativa HOM05D005899 ORTHO05D007445 1.5e-122 443.4 310 70.6
Ciclev10001941m.g Citrus clementina HOM05D005899 ORTHO05D007445 4.4e-122 441.8 311 71.4
Phvul.006G099800 Phaseolus vulgaris HOM05D005899 ORTHO05D007445 9.7e-122 440.7 298 73.2
FAN14G1139 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.3e-121 440.3 302 71.5
Lalb_Chr15g0076871 Lupinus albus HOM05D005899 ORTHO05D007445 1.7e-121 439.9 308 70.1
Sed0018425 Sechium edule HOM05D005899 ORTHO05D007445 2.8e-121 439.1 300 71.0
Ciclev10001942m.g Citrus clementina HOM05D005899 ORTHO05D007445 6.3e-121 438.0 311 70.4
CARHR079150 Cardamine hirsuta HOM05D005899 ORTHO05D007445 2.6e-119 432.6 309 68.6
Thecc.05G288500 Theobroma cacao HOM05D005899 ORTHO05D007445 5.9e-119 431.4 314 69.1
Aa31LG5G15270 Aethionema arabicum HOM05D005899 ORTHO05D007445 1.0e-118 430.6 307 67.8
Lj1g0012490 Lotus japonicus HOM05D005899 ORTHO05D007445 1.3e-118 430.3 294 71.4
AT3G04880 Arabidopsis thaliana HOM05D005899 ORTHO05D007445 2.9e-118 429.1 308 68.2
C05p62440 Brassica napus HOM05D005899 ORTHO05D007445 1.9e-117 426.4 306 68.3
Duzib177G0382 Durio zibethinus HOM05D005899 ORTHO05D007445 1.9e-117 426.4 313 68.7
Manes.09G155900 Manihot esculenta HOM05D005899 ORTHO05D007445 3.2e-117 425.6 316 66.8
A05p42720 Brassica napus HOM05D005899 ORTHO05D007445 9.4e-117 424.1 307 67.8
Potri.005G050600 Populus trichocarpa HOM05D005899 ORTHO05D007445 2.1e-116 422.9 307 67.1
THA.LOC104802822 Tarenaya hassleriana HOM05D005899 ORTHO05D007445 2.1e-116 422.9 312 65.1
BraA05t22981Z Brassica rapa HOM05D005899 ORTHO05D007445 4.7e-116 421.8 306 67.3
TWI56G0091 Tripterygium wilfordii HOM05D005899 ORTHO05D007445 4.7e-116 421.8 315 66.3
FAN05G2237 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.0e-115 420.6 307 69.4
Duzib128G1862 Durio zibethinus HOM05D005899 ORTHO05D007445 1.4e-115 420.2 313 67.7
Sabra15G0068500 Salix brachista HOM05D005899 ORTHO05D007445 2.3e-115 419.5 323 64.7
BolC5t34897H Brassica oleracea HOM05D005899 ORTHO05D007445 2.6e-114 416.0 308 67.2
Gorai.007G285000 Gossypium raimondii HOM05D005899 ORTHO05D007445 2.6e-114 416.0 309 66.3
BcaB03g11648 Brassica carinata HOM05D005899 ORTHO05D007445 4.4e-114 415.2 307 66.1
Gohir.A11G255200 Gossypium hirsutum HOM05D005899 ORTHO05D007445 7.4e-114 414.5 309 66.3
Gohir.D11G264900 Gossypium hirsutum HOM05D005899 ORTHO05D007445 1.7e-113 413.3 309 66.3
CSS0047717 Camellia sinensis var. sinensis HOM05D005899 ORTHO05D007445 4.8e-113 411.8 296 67.6
Lj7P487T33 Lonicera japonica HOM05D005899 ORTHO05D007445 9.1e-112 407.5 296 65.2
Actinidia05763 Actinidia chinensis HOM05D005899 ORTHO05D007445 1.2e-111 407.1 298 65.4
Dinv11553 Davidia involucrata HOM05D005899 ORTHO05D007445 1.6e-111 406.8 302 65.6
Sp3g03700 Schrenkiella parvula HOM05D005899 ORTHO05D007445 4.5e-111 405.2 305 66.2
QL03p024564 Quercus lobata HOM05D005899 ORTHO05D007445 1.3e-110 403.7 304 67.8
Cpa.g.sc117.66 Carica papaya HOM05D005899 ORTHO05D007445 8.5e-110 401.0 308 64.9
DCAR_006615 Daucus carota HOM05D005899 ORTHO05D007445 1.9e-109 399.8 298 65.4
Rhsim07G0131800 Rhododendron simsii HOM05D005899 ORTHO05D007445 7.2e-109 397.9 306 65.0
PSO761G0524 Papaver somniferum HOM05D005899 ORTHO05D007445 9.4e-109 397.5 297 63.6
TAR362G0589 Trochodendron aralioides HOM05D005899 ORTHO05D007445 9.4e-109 397.5 298 63.8
AUR62000983 Chenopodium quinoa HOM05D005899 ORTHO05D007445 6.1e-108 394.8 296 61.1
Cfa006460 Carpinus fangiana HOM05D005899 ORTHO05D007445 8.0e-108 394.4 289 68.9
vmacro14199 Vaccinium macrocarpon HOM05D005899 ORTHO05D007445 1.0e-107 394.0 314 63.7
Migut.N00303 Erythranthe guttata HOM05D005899 ORTHO05D007445 2.3e-107 392.9 309 63.8
SHI18352 Sapria himalayana HOM05D005899 ORTHO05D007445 4.0e-107 392.1 314 62.1
MBI01_g13083_MAGBIO Magnolia biondii HOM05D005899 ORTHO05D007445 1.2e-106 390.6 299 62.5
Oeu064565.1 Olea europaea HOM05D005899 ORTHO05D007445 1.5e-106 390.2 315 62.5
EL10Ac4g09173 Beta vulgaris HOM05D005899 ORTHO05D007445 2.6e-106 389.4 311 59.5
Solyc01g097800.3 Solanum lycopersicum HOM05D005899 ORTHO05D007445 5.7e-106 388.3 311 61.7
SGA_v2.0_scaffold517G52669 Striga asiatica HOM05D005899 ORTHO05D007445 1.7e-105 386.7 294 64.3
CDE05G2514 Ceratophyllum demersum HOM05D005899 ORTHO05D007445 3.7e-105 385.6 297 61.6
PGSC0003DMG400022509 Solanum tuberosum HOM05D005899 ORTHO05D007445 4.8e-105 385.2 307 61.9
Nitab4.5_0002361g0040 Nicotiana tabacum HOM05D005899 ORTHO05D007445 1.1e-104 384.0 306 60.8
Sopen01g041400 Solanum pennellii HOM05D005899 ORTHO05D007445 3.5e-103 379.0 307 60.6
Eucgr.L02099 Eucalyptus grandis HOM05D005899 ORTHO05D007445 5.9e-103 378.3 198 93.4
HPP92_023141 Vanilla planifolia HOM05D005899 ORTHO05D007445 1.7e-102 376.7 301 61.8
ATR0681G168 Amborella trichopoda HOM05D005899 ORTHO05D007445 2.9e-102 375.9 313 61.0
HanXRQChr02g0057281 Helianthus annuus HOM05D005899 ORTHO05D007445 5.5e-101 371.7 293 60.1
Os01g0542000 Oryza sativa ssp. japonica HOM05D005899 ORTHO05D007445 5.5e-101 371.7 312 59.3
Lsat_1_v5_gn_6_53000 Lactuca sativa HOM05D005899 ORTHO05D007445 1.2e-100 370.5 297 62.0
Cc02_g31760 Coffea canephora HOM05D005899 ORTHO05D007445 1.6e-100 370.2 310 60.3
Sc13g0006240 Simmondsia chinensis HOM05D005899 ORTHO05D007445 1.0e-99 367.5 309 57.9
Oeu044665.1 Olea europaea HOM05D005899 ORTHO05D007445 1.4e-99 367.1 305 60.7
Zm00001eb162780 Zea mays HOM05D005899 ORTHO05D007445 4.0e-99 365.5 307 59.3
ECA233G4289 Erigeron canadensis HOM05D005899 ORTHO05D007445 9.8e-98 360.9 299 58.9
TPR.G8897 Trifolium pratense HOM05D005899 ORTHO05D007445 6.3e-97 358.2 252 67.5
Eucgr.L02186 Eucalyptus grandis HOM05D005899 ORTHO05D007445 7.7e-95 351.3 301 59.1
SEGI_33796 Sequoiadendron giganteum HOM05D005899 ORTHO05D007445 1.3e-94 350.5 299 56.5
SMO367G0143 Selaginella moellendorffii HOM05D005899 ORTHO05D007445 8.6e-94 347.8 298 56.4
AL3G15170 Arabidopsis lyrata HOM05D005899 ORTHO05D007445 1.9e-93 346.7 230 70.9
Eucgr.B01712 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.9e-93 346.7 294 62.2
Sabra15G0041400 Salix brachista HOM05D005899 ORTHO05D007445 2.3e-91 339.7 323 55.7
Atru.chr2.732 Acer truncatum HOM05D005899 ORTHO05D007445 7.0e-88 328.2 246 68.7
Atru.chr2.745 Acer truncatum HOM05D005899 ORTHO05D007445 9.2e-88 327.8 244 69.3
CAN.G134.162 Capsicum annuum HOM05D005899 ORTHO05D007445 1.0e-86 324.3 308 55.8
Nn4g26305 Nelumbo nucifera HOM05D005899 ORTHO05D007445 1.0e-86 324.3 237 64.1
FAN09G0887 Fragaria x ananassa HOM05D005899 ORTHO05D007445 4.7e-84 315.5 298 57.7
Pp3c6_4500 Physcomitrium patens HOM05D005899 ORTHO05D007445 1.8e-83 313.5 425 41.2
Haze_04330 Corylus avellana HOM05D005899 ORTHO05D007445 7.5e-82 308.1 273 58.6
Eucgr.B01710 Eucalyptus grandis HOM05D005899 ORTHO05D007445 5.4e-80 302.0 294 57.5
Atru.chr2.742 Acer truncatum HOM05D005899 ORTHO05D007445 6.2e-76 288.5 242 64.5
Peaxi162Scf00404g00009 Petunia axillaris HOM05D005899 ORTHO05D007445 4.3e-69 265.8 202 62.9
Nitab4.5_0013433g0050 Nicotiana tabacum HOM05D005899 ORTHO05D007445 3.4e-66 256.1 192 61.5
Actinidia36917 Actinidia chinensis HOM05D005899 ORTHO05D007445 1.6e-60 237.3 202 58.4
Ah.04g162380 Amaranthus hybridus HOM05D005899 ORTHO05D007445 1.1e-59 234.6 165 60.6
Carub.0003s0407 Capsella rubella HOM05D005899 ORTHO05D007445 1.4e-59 234.2 131 79.4
AUR62004985 Chenopodium quinoa HOM05D005899 ORTHO05D007445 1.1e-56 224.6 249 47.4
Sabra15G0057000 Salix brachista HOM05D005899 ORTHO05D007445 5.1e-54 215.7 146 67.1
Sabra15G0068600 Salix brachista HOM05D005899 ORTHO05D007445 5.1e-54 215.7 146 67.1
Sabra15G0056900 Salix brachista HOM05D005899 ORTHO05D007445 5.6e-53 212.2 128 72.7
Dinv12477 Davidia involucrata HOM05D005899 ORTHO05D007445 6.2e-52 208.8 141 68.1
BcaNung06538 Brassica carinata HOM05D005899 ORTHO05D007445 3.4e-50 203.0 165 62.4
Medtr8g098320 Medicago truncatula HOM05D005899 ORTHO05D007445 6.4e-49 198.7 168 60.7
unitig_744.g24569 Utricularia gibba HOM05D005899 ORTHO05D007445 3.2e-48 196.4 191 56.5
FAN05G4786 Fragaria x ananassa HOM05D005899 ORTHO05D007445 2.1e-47 193.7 102 85.3
AUR62004976 Chenopodium quinoa HOM05D005899 ORTHO05D007445 1.7e-46 190.7 159 55.3
Cfa006462 Carpinus fangiana HOM05D005899 ORTHO05D007445 1.3e-44 184.5 127 68.5
Medtr7g114730 Medicago truncatula HOM05D005899 ORTHO05D007445 1.3e-44 184.5 160 58.8
SGA_v2.0_scaffold31G12627 Striga asiatica HOM05D005899 ORTHO05D007445 1.6e-39 167.5 132 56.8
FAN05G4109 Fragaria x ananassa HOM05D005899 ORTHO05D007445 3.5e-39 166.4 173 55.5
TPR.G21843 Trifolium pratense HOM05D005899 ORTHO05D007445 2.5e-37 160.2 117 72.6
Carub.0003s0408 Capsella rubella HOM05D005899 ORTHO05D007445 5.6e-29 132.5 98 69.4
RcHm_v2.0_Chr7g0217791 Rosa chinensis HOM05D005899 ORTHO05D007445 2.1e-23 114.0 139 47.5
AUR62000980 Chenopodium quinoa HOM05D005899 ORTHO05D007445 2.2e-20 104.0 90 57.8
TAR636G1090 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.4e-19 100.5 102 49.0
TAR140G0002 Trochodendron aralioides HOM05D005899 ORTHO05D007445 3.1e-19 100.1 102 49.0
TAR623G1042 Trochodendron aralioides HOM05D005899 ORTHO05D007445 3.1e-19 100.1 102 49.0
TAR375G0990 Trochodendron aralioides HOM05D005899 ORTHO05D007445 4.5e-18 96.3 103 49.5
unitig_21.g20175 Utricularia gibba HOM05D005899 ORTHO05D007445 6.5e-17 92.4 78 59.0
PRCOL_00001982 Prasinoderma coloniale HOM05D005899 ORTHO05D007445 8.5e-17 92.0 173 34.1
TAR625G0400 Trochodendron aralioides HOM05D005899 ORTHO05D007445 5.7e-13 79.3 87 46.0
TAR375G0306 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.2e-07 61.6 43 67.4


User provided reference genes

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