Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01201 Eucalyptus grandis HOM05D000216 ORTHO05D003518 9.6e-43 176.4 88 100.0
CiPaw.12G030900 Carya illinoinensis HOM05D000216 ORTHO05D003518 7.4e-19 97.1 70 72.9
QL93p1261_0001 Quercus lobata HOM05D000216 ORTHO05D003518 3.7e-18 94.7 70 70.0
LjContig00318g0019073 Lotus japonicus HOM05D000216 ORTHO05D003518 1.1e-17 93.2 70 70.0
PSO548G0007 Papaver somniferum HOM05D000216 ORTHO05D003518 1.4e-17 92.8 70 68.6
Ah.10g027610 Amaranthus hybridus HOM05D000216 ORTHO05D003518 1.8e-17 92.4 70 70.0
Ah.10g027790 Amaranthus hybridus HOM05D000216 ORTHO05D003518 1.8e-17 92.4 70 70.0
PGR111G0003 Punica granatum HOM05D000216 ORTHO05D003518 2.4e-17 92.0 70 68.6
CAN.G612.2 Capsicum annuum HOM05D000216 ORTHO05D003518 3.1e-17 91.7 70 68.6
RcHm_v2.0_CPg0502421 Rosa chinensis HOM05D000216 ORTHO05D003518 4.1e-17 91.3 70 68.6
arahy.Tifrunner.gnm1.ann1.RU7F0N Arachis hypogaea HOM05D000216 ORTHO05D003518 5.3e-17 90.9 70 67.1
Potri.013G139670 Populus trichocarpa HOM05D000216 ORTHO05D003518 5.3e-17 90.9 70 67.1
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 5.3e-17 90.9 70 67.1
Atru.chr1.950 Acer truncatum HOM05D000216 ORTHO05D003518 6.9e-17 90.5 69 69.6
MSTRG.22048 Avicennia marina HOM05D000216 ORTHO05D003518 6.9e-17 90.5 70 68.6
Migut.D01338 Erythranthe guttata HOM05D000216 ORTHO05D003518 6.9e-17 90.5 70 68.6
Medtr4g051110 Medicago truncatula HOM05D000216 ORTHO05D003518 6.9e-17 90.5 70 67.1
AUR62030169 Chenopodium quinoa HOM05D000216 ORTHO05D003518 9.0e-17 90.1 70 67.1
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 9.0e-17 90.1 70 67.1
CSS0038652 Camellia sinensis var. sinensis HOM05D000216 ORTHO05D003518 1.2e-16 89.7 70 67.1
LjContig00489g0007578 Lotus japonicus HOM05D000216 ORTHO05D003518 1.5e-16 89.4 70 67.1
Nn020s41500 Nelumbo nucifera HOM05D000216 ORTHO05D003518 1.5e-16 89.4 70 65.7
Nn025s41561 Nelumbo nucifera HOM05D000216 ORTHO05D003518 1.5e-16 89.4 70 65.7
Ah.05g176560 Amaranthus hybridus HOM05D000216 ORTHO05D003518 2.0e-16 89.0 70 67.1
CsaV3_UNG207820 Cucumis sativus L. HOM05D000216 ORTHO05D003518 4.5e-16 87.8 68 69.1
Potri.019G028700 Populus trichocarpa HOM05D000216 ORTHO05D003518 4.5e-16 87.8 70 64.3
Sed0001459 Sechium edule HOM05D000216 ORTHO05D003518 4.5e-16 87.8 68 69.1
Sed0001731 Sechium edule HOM05D000216 ORTHO05D003518 4.5e-16 87.8 68 69.1
Sed0025851 Sechium edule HOM05D000216 ORTHO05D003518 4.5e-16 87.8 68 69.1
AUR62021207 Chenopodium quinoa HOM05D000216 ORTHO05D003518 5.9e-16 87.4 70 65.7
HanXRQChr00c0313g0573451 Helianthus annuus HOM05D000216 ORTHO05D003518 5.9e-16 87.4 70 65.7
HanXRQChr00c0601g0576521 Helianthus annuus HOM05D000216 ORTHO05D003518 5.9e-16 87.4 70 65.7
HanXRQChr08g0210191 Helianthus annuus HOM05D000216 ORTHO05D003518 5.9e-16 87.4 70 65.7
HanXRQChr11g0326621 Helianthus annuus HOM05D000216 ORTHO05D003518 5.9e-16 87.4 70 65.7
HanXRQChr13g0415481 Helianthus annuus HOM05D000216 ORTHO05D003518 5.9e-16 87.4 70 65.7
HanXRQCPg0579811 Helianthus annuus HOM05D000216 ORTHO05D003518 5.9e-16 87.4 70 65.7
Lsat_1_v5_gn_0_46600 Lactuca sativa HOM05D000216 ORTHO05D003518 5.9e-16 87.4 70 65.7
Psat4g062520 Pisum sativum HOM05D000216 ORTHO05D003518 5.9e-16 87.4 68 67.6
MELO3C000623.2 Cucumis melo HOM05D000216 ORTHO05D003518 7.7e-16 87.0 68 69.1
HanXRQChr14g0428001 Helianthus annuus HOM05D000216 ORTHO05D003518 7.7e-16 87.0 70 64.3
HanXRQChr14g0428021 Helianthus annuus HOM05D000216 ORTHO05D003518 7.7e-16 87.0 70 64.3
Medtr7g116690 Medicago truncatula HOM05D000216 ORTHO05D003518 7.7e-16 87.0 77 61.0
unitig_91.g26495 Utricularia gibba HOM05D000216 ORTHO05D003518 7.7e-16 87.0 70 67.1
arahy.Tifrunner.gnm1.ann1.D2ZWCD Arachis hypogaea HOM05D000216 ORTHO05D003518 1.0e-15 86.7 69 63.8
arahy.Tifrunner.gnm1.ann1.S81HDC Arachis hypogaea HOM05D000216 ORTHO05D003518 1.0e-15 86.7 69 63.8
AUR62030121 Chenopodium quinoa HOM05D000216 ORTHO05D003518 1.0e-15 86.7 70 64.3
Lsat_1_v5_gn_0_22681 Lactuca sativa HOM05D000216 ORTHO05D003518 1.0e-15 86.7 70 64.3
Psat0s2961g0040 Pisum sativum HOM05D000216 ORTHO05D003518 1.7e-15 85.9 68 66.2
Psat2g079840 Pisum sativum HOM05D000216 ORTHO05D003518 1.7e-15 85.9 68 66.2
Psat6g219440 Pisum sativum HOM05D000216 ORTHO05D003518 1.7e-15 85.9 68 66.2
Aa31csc39G170 Aethionema arabicum HOM05D000216 ORTHO05D003518 2.2e-15 85.5 70 64.3
BcaC05g28802 Brassica carinata HOM05D000216 ORTHO05D003518 2.2e-15 85.5 70 64.3
BNapus_Darmor_BZH_scaffold_253p00050 Brassica napus HOM05D000216 ORTHO05D003518 2.2e-15 85.5 70 64.3
BolSC29t60572H Brassica oleracea HOM05D000216 ORTHO05D003518 2.2e-15 85.5 70 64.3
BolSC37t60769H Brassica oleracea HOM05D000216 ORTHO05D003518 2.2e-15 85.5 70 64.3
BolSC45t60936H Brassica oleracea HOM05D000216 ORTHO05D003518 2.2e-15 85.5 70 64.3
BolSC46t60986H Brassica oleracea HOM05D000216 ORTHO05D003518 2.2e-15 85.5 70 64.3
BolSC49t61199H Brassica oleracea HOM05D000216 ORTHO05D003518 2.2e-15 85.5 70 64.3
BraSC140t45589Z Brassica rapa HOM05D000216 ORTHO05D003518 2.2e-15 85.5 70 64.3
BraSC25t45883Z Brassica rapa HOM05D000216 ORTHO05D003518 2.2e-15 85.5 70 64.3
BraSC58t46404Z Brassica rapa HOM05D000216 ORTHO05D003518 2.2e-15 85.5 70 64.3
BraSC59t46514Z Brassica rapa HOM05D000216 ORTHO05D003518 2.2e-15 85.5 70 64.3
CARHR281910 Cardamine hirsuta HOM05D000216 ORTHO05D003518 2.2e-15 85.5 70 64.3
Psat2g120680 Pisum sativum HOM05D000216 ORTHO05D003518 2.2e-15 85.5 68 67.6
arahy.Tifrunner.gnm1.ann1.3KQL5I Arachis hypogaea HOM05D000216 ORTHO05D003518 2.9e-15 85.1 64 70.3
Lalb_Chr01g0008431 Lupinus albus HOM05D000216 ORTHO05D003518 2.9e-15 85.1 69 66.7
Lalb_Chr09g0335351 Lupinus albus HOM05D000216 ORTHO05D003518 2.9e-15 85.1 69 66.7
Psat6g018440 Pisum sativum HOM05D000216 ORTHO05D003518 2.9e-15 85.1 70 62.9
AL2G20950 Arabidopsis lyrata HOM05D000216 ORTHO05D003518 3.8e-15 84.7 70 64.3
ATCG00160 Arabidopsis thaliana HOM05D000216 ORTHO05D003518 3.8e-15 84.7 70 64.3
DCAR_032473 Daucus carota HOM05D000216 ORTHO05D003518 3.8e-15 84.7 70 64.3
Atru.chr13.1804 Acer truncatum HOM05D000216 ORTHO05D003518 5.0e-15 84.3 68 64.7
Atru.chr13.1817 Acer truncatum HOM05D000216 ORTHO05D003518 5.0e-15 84.3 68 64.7
CAN.G201.5 Capsicum annuum HOM05D000216 ORTHO05D003638 6.5e-15 84.0 65 67.7
Psat7g033640 Pisum sativum HOM05D000216 ORTHO05D003518 6.5e-15 84.0 68 64.7
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 8.5e-15 83.6 62 71.0
Psat0s2288g0040 Pisum sativum HOM05D000216 ORTHO05D003638 1.4e-14 82.8 65 64.6
Solyc07g021280.1 Solanum lycopersicum HOM05D000216 ORTHO05D003518 1.4e-14 82.8 77 59.7
Eucgr.J01354 Eucalyptus grandis HOM05D000216 ORTHO05D003518 1.9e-14 82.4 72 62.5
Gohir.A05G307932 Gossypium hirsutum HOM05D000216 ORTHO05D003518 2.5e-14 82.0 70 58.6
Phvul.003G256732 Phaseolus vulgaris HOM05D000216 ORTHO05D003518 2.5e-14 82.0 67 64.2
Zm00001eb226420 Zea mays HOM05D000216 ORTHO05D003518 2.5e-14 82.0 70 60.0
Gohir.D05G308250 Gossypium hirsutum HOM05D000216 ORTHO05D003518 4.2e-14 81.3 78 56.4
Psat0s1586g0160 Pisum sativum HOM05D000216 ORTHO05D003518 5.5e-14 80.9 70 60.0
Hund27995 Selenicereus undatus HOM05D000216 ORTHO05D003638 7.2e-14 80.5 65 63.1
Hund29741 Selenicereus undatus HOM05D000216 ORTHO05D003638 7.2e-14 80.5 65 63.1
Glyma.07G071200 Glycine max HOM05D000216 ORTHO05D003518 1.2e-13 79.7 70 62.9
Lsat_1_v5_gn_1_56581 Lactuca sativa HOM05D000216 ORTHO05D003518 1.2e-13 79.7 70 61.4
Migut.C00361 Erythranthe guttata HOM05D000216 ORTHO05D003518 1.6e-13 79.3 70 64.3
arahy.Tifrunner.gnm1.ann1.49E3RC Arachis hypogaea HOM05D000216 ORTHO05D003638 6.1e-13 77.4 58 69.0
arahy.Tifrunner.gnm1.ann1.77R9Y6 Arachis hypogaea HOM05D000216 ORTHO05D003638 6.1e-13 77.4 58 69.0
Medtr0002s0530 Medicago truncatula HOM05D000216 ORTHO05D003638 6.1e-13 77.4 64 59.4
Solyc00g500051.1 Solanum lycopersicum HOM05D000216 ORTHO05D003518 7.9e-13 77.0 67 64.2
Solyc00g500134.1 Solanum lycopersicum HOM05D000216 ORTHO05D003518 7.9e-13 77.0 67 64.2
Solyc00g500204.1 Solanum lycopersicum HOM05D000216 ORTHO05D003518 7.9e-13 77.0 67 64.2
Solyc00g500291.1 Solanum lycopersicum HOM05D000216 ORTHO05D003518 7.9e-13 77.0 67 64.2
Solyc00g500320.1 Solanum lycopersicum HOM05D000216 ORTHO05D003518 7.9e-13 77.0 67 64.2
EL10As12g24015 Beta vulgaris HOM05D000216 ORTHO05D003638 1.0e-12 76.6 58 69.0
HanXRQChr10g0282511 Helianthus annuus HOM05D000216 ORTHO05D003518 1.8e-12 75.9 61 65.6
Solyc01g017530.1 Solanum lycopersicum HOM05D000216 ORTHO05D003518 1.8e-12 75.9 62 64.5
Solyc12g062630.1 Solanum lycopersicum HOM05D000216 ORTHO05D003518 1.8e-12 75.9 72 58.3
arahy.Tifrunner.gnm1.ann1.KPH33C Arachis hypogaea HOM05D000216 ORTHO05D003638 2.3e-12 75.5 58 67.2
MELO3C001352.2 Cucumis melo HOM05D000216 ORTHO05D003518 5.1e-12 74.3 58 67.2
Psat5g134640 Pisum sativum HOM05D000216 ORTHO05D000634 1.1e-11 73.2 95 48.4
MD16G1263300 Malus domestica HOM05D000216 ORTHO05D003638 2.5e-11 72.0 63 61.9
Gorai.005G227600 Gossypium raimondii HOM05D000216 ORTHO05D003518 4.3e-11 71.2 59 61.0
Gorai.013G017800 Gossypium raimondii HOM05D000216 ORTHO05D003638 4.3e-11 71.2 63 58.7
Ah.10g028510 Amaranthus hybridus HOM05D000216 ORTHO05D003518 5.7e-11 70.9 55 67.3
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 5.7e-11 70.9 55 67.3
Hund03957 Selenicereus undatus HOM05D000216 ORTHO05D003638 9.7e-11 70.1 58 60.3
Hund18044 Selenicereus undatus HOM05D000216 ORTHO05D003638 9.7e-11 70.1 58 60.3
Hund27559 Selenicereus undatus HOM05D000216 ORTHO05D003638 9.7e-11 70.1 58 60.3
Hund27611 Selenicereus undatus HOM05D000216 ORTHO05D003638 9.7e-11 70.1 58 60.3
Hund27653 Selenicereus undatus HOM05D000216 ORTHO05D003638 9.7e-11 70.1 58 60.3
Hund27865 Selenicereus undatus HOM05D000216 ORTHO05D003638 9.7e-11 70.1 58 60.3
Hund27918 Selenicereus undatus HOM05D000216 ORTHO05D003638 9.7e-11 70.1 58 60.3
Hund28152 Selenicereus undatus HOM05D000216 ORTHO05D003638 9.7e-11 70.1 58 60.3
Hund28178 Selenicereus undatus HOM05D000216 ORTHO05D003638 9.7e-11 70.1 58 60.3
Hund28276 Selenicereus undatus HOM05D000216 ORTHO05D003638 9.7e-11 70.1 58 60.3
Hund28388 Selenicereus undatus HOM05D000216 ORTHO05D003638 9.7e-11 70.1 58 60.3
Hund28560 Selenicereus undatus HOM05D000216 ORTHO05D003638 9.7e-11 70.1 58 60.3
Hund28651 Selenicereus undatus HOM05D000216 ORTHO05D003638 9.7e-11 70.1 58 60.3
Hund28794 Selenicereus undatus HOM05D000216 ORTHO05D003638 9.7e-11 70.1 58 60.3
Hund29068 Selenicereus undatus HOM05D000216 ORTHO05D003638 9.7e-11 70.1 58 60.3
Hund29351 Selenicereus undatus HOM05D000216 ORTHO05D003638 9.7e-11 70.1 58 60.3
Hund29885 Selenicereus undatus HOM05D000216 ORTHO05D003638 9.7e-11 70.1 58 60.3
Hund30206 Selenicereus undatus HOM05D000216 ORTHO05D003638 9.7e-11 70.1 58 60.3
Hund30310 Selenicereus undatus HOM05D000216 ORTHO05D003638 9.7e-11 70.1 58 60.3
Hund30432 Selenicereus undatus HOM05D000216 ORTHO05D003638 9.7e-11 70.1 58 60.3
Hund30437 Selenicereus undatus HOM05D000216 ORTHO05D003638 9.7e-11 70.1 58 60.3
Hund30661 Selenicereus undatus HOM05D000216 ORTHO05D003518 9.7e-11 70.1 58 60.3
Hund30710 Selenicereus undatus HOM05D000216 ORTHO05D003518 9.7e-11 70.1 58 60.3
Hund30852 Selenicereus undatus HOM05D000216 ORTHO05D003638 9.7e-11 70.1 58 60.3
Hund31037 Selenicereus undatus HOM05D000216 ORTHO05D003638 9.7e-11 70.1 58 60.3
Hund31056 Selenicereus undatus HOM05D000216 ORTHO05D003638 9.7e-11 70.1 58 60.3
Hund29488 Selenicereus undatus HOM05D000216 ORTHO05D003518 2.8e-10 68.6 54 66.7
Pp3c7_4970 Physcomitrium patens HOM05D000216 ORTHO05D003518 4.8e-10 67.8 65 55.4
Hund01857 Selenicereus undatus HOM05D000216 ORTHO05D003518 1.8e-09 65.9 62 56.5
TAR636G2296 Trochodendron aralioides HOM05D000216 ORTHO05D008899 1.8e-09 65.9 52 61.5
arahy.Tifrunner.gnm1.ann1.TG7LSU Arachis hypogaea HOM05D000216 ORTHO05D003638 5.3e-09 64.3 53 64.2
Migut.D01413 Erythranthe guttata HOM05D000216 ORTHO05D003518 6.9e-09 63.9 50 70.0
SEGI_07796 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 9.1e-09 63.5 65 50.8
SEGI_22490 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 9.1e-09 63.5 65 50.8
SEGI_35543 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 9.1e-09 63.5 65 50.8
SEGI_38828 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 9.1e-09 63.5 65 50.8
HanXRQChr13g0414271 Helianthus annuus HOM05D000216 ORTHO05D003518 1.2e-08 63.2 49 63.3
CARHR181360 Cardamine hirsuta HOM05D000216 ORTHO05D003518 3.4e-08 61.6 50 64.0
SGA_v2.0_scaffold119G32689 Striga asiatica HOM05D000216 ORTHO05D000634 3.4e-08 61.6 49 67.3
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 1.0e-07 60.1 48 62.5
SGA_v2.0_scaffold95G28823 Striga asiatica HOM05D000216 ORTHO05D003638 1.0e-07 60.1 48 62.5
Lalb_Chr06g0173071 Lupinus albus HOM05D000216 ORTHO05D003518 2.9e-07 58.5 46 67.4
Nitab4.5_0000312g0230 Nicotiana tabacum HOM05D000216 ORTHO05D003518 2.9e-07 58.5 47 59.6
Nitab4.5_0001639g0020 Nicotiana tabacum HOM05D000216 ORTHO05D003638 3.8e-07 58.2 51 64.7
Mapoly0121s0021 Marchantia polymorpha HOM05D000216 ORTHO05D003518 5.0e-07 57.8 56 51.8
Medtr3g029540 Medicago truncatula HOM05D000216 ORTHO05D003518 5.0e-07 57.8 58 53.4
Gohir.D09G071550 Gossypium hirsutum HOM05D000216 ORTHO05D003518 1.9e-06 55.8 46 65.2
Gorai.006G086500 Gossypium raimondii HOM05D000216 ORTHO05D003518 1.9e-06 55.8 46 65.2
Gohir.A05G086033 Gossypium hirsutum HOM05D000216 ORTHO05D003518 3.2e-06 55.1 41 65.9
arahy.Tifrunner.gnm1.ann1.M78D68 Arachis hypogaea HOM05D000216 ORTHO05D003638 9.4e-06 53.5 50 56.0


User provided reference genes

Program Settings