Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00310 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.9e-43 178.7 86 100.0
Eucgr.G00759 Eucalyptus grandis HOM05D000343 ORTHO05D009884 2.0e-40 168.7 86 95.3
Eucgr.G00664 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.2e-29 132.9 71 90.1
Eucgr.L00481 Eucalyptus grandis HOM05D000343 ORTHO05D009884 4.8e-23 110.9 57 94.7
Eucgr.G00674 Eucalyptus grandis HOM05D000343 ORTHO05D009884 9.1e-22 106.7 60 93.3
Eucgr.G00769 Eucalyptus grandis HOM05D000343 ORTHO05D002777 2.2e-15 85.5 54 81.5
Gohir.A03G173900 Gossypium hirsutum HOM05D000343 ORTHO05D002777 1.1e-14 83.2 47 87.2
Gohir.D02G197000 Gossypium hirsutum HOM05D000343 ORTHO05D009884 1.1e-14 83.2 47 87.2
Gorai.005G220100 Gossypium raimondii HOM05D000343 ORTHO05D009884 1.1e-14 83.2 47 87.2
PGR042G3206 Punica granatum HOM05D000343 ORTHO05D002777 2.4e-14 82.0 47 83.0
CSS0044959 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D002777 3.1e-14 81.6 54 77.8
Duzib132G0085 Durio zibethinus HOM05D000343 ORTHO05D002777 4.1e-14 81.3 47 85.1
COL.COLO4_24941 Corchorus olitorius HOM05D000343 ORTHO05D009884 5.4e-14 80.9 47 83.0
Eucgr.L00173 Eucalyptus grandis HOM05D000343 ORTHO05D009884 5.4e-14 80.9 47 87.2
MD10G1051800 Malus domestica HOM05D000343 ORTHO05D009884 5.4e-14 80.9 47 85.1
MD05G1044800 Malus domestica HOM05D000343 ORTHO05D009884 9.1e-14 80.1 47 85.1
Potri.001G205400 Populus trichocarpa HOM05D000343 ORTHO05D002777 1.2e-13 79.7 54 75.9
Eucgr.L00219 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.6e-13 79.3 47 85.1
Prupe.8G060400 Prunus persica HOM05D000343 ORTHO05D002777 1.6e-13 79.3 54 74.1
Cpa.g.sc42.57 Carica papaya HOM05D000343 ORTHO05D009884 2.0e-13 79.0 54 74.1
Duzib248G1573 Durio zibethinus HOM05D000343 ORTHO05D009884 2.0e-13 79.0 47 80.9
Manes.06G012600 Manihot esculenta HOM05D000343 ORTHO05D002777 2.0e-13 79.0 54 72.2
CANSAT11G1697 Cannabis sativa HOM05D000343 ORTHO05D002777 2.7e-13 78.6 54 74.1
Ca_18353_v3 Cicer arietinum L. HOM05D000343 ORTHO05D002777 2.7e-13 78.6 47 83.0
Glyma.08G072400 Glycine max HOM05D000343 ORTHO05D002777 2.7e-13 78.6 47 83.0
Sabra03G0015100 Salix brachista HOM05D000343 ORTHO05D009884 2.7e-13 78.6 54 74.1
GSVIVG01038744001 Vitis vinifera HOM05D000343 ORTHO05D009884 2.7e-13 78.6 54 74.1
Ciclev10030175m.g Citrus clementina HOM05D000343 ORTHO05D009884 3.5e-13 78.2 54 74.1
Phvul.002G208800 Phaseolus vulgaris HOM05D000343 ORTHO05D002777 3.5e-13 78.2 47 80.9
VMungo0251G0418 Vigna mungo HOM05D000343 ORTHO05D009884 3.5e-13 78.2 47 80.9
Actinidia00268 Actinidia chinensis HOM05D000343 ORTHO05D002777 4.5e-13 77.8 54 74.1
TWI59G0918 Tripterygium wilfordii HOM05D000343 ORTHO05D002777 4.5e-13 77.8 54 72.2
Atru.chr6.1136 Acer truncatum HOM05D000343 ORTHO05D002777 5.9e-13 77.4 54 75.9
CAN.G523.72 Capsicum annuum HOM05D000343 ORTHO05D002777 5.9e-13 77.4 54 70.4
Cfa005601 Carpinus fangiana HOM05D000343 ORTHO05D002777 5.9e-13 77.4 54 74.1
Hma1.2p1_0704F.1_g206650 Hydrangea macrophylla HOM05D000343 ORTHO05D002777 5.9e-13 77.4 54 72.2
Lalb_Chr10g0097841 Lupinus albus HOM05D000343 ORTHO05D002777 5.9e-13 77.4 47 80.9
Nitab4.5_0002576g0010 Nicotiana tabacum HOM05D000343 ORTHO05D002777 5.9e-13 77.4 54 70.4
DCAR_001785 Daucus carota HOM05D000343 ORTHO05D009884 7.7e-13 77.0 54 70.4
Eucgr.L00482 Eucalyptus grandis HOM05D000343 ORTHO05D009884 7.7e-13 77.0 54 72.2
Lsat_1_v5_gn_9_117160 Lactuca sativa HOM05D000343 ORTHO05D002777 7.7e-13 77.0 54 75.9
Medtr4g094232 Medicago truncatula HOM05D000343 ORTHO05D002777 7.7e-13 77.0 47 83.0
Solyc01g105160.4 Solanum lycopersicum HOM05D000343 ORTHO05D002777 7.7e-13 77.0 54 70.4
Sopen01g047700 Solanum pennellii HOM05D000343 ORTHO05D009884 7.7e-13 77.0 54 70.4
PGSC0003DMG400012559 Solanum tuberosum HOM05D000343 ORTHO05D009884 7.7e-13 77.0 54 70.4
Thecc.02G138700 Theobroma cacao HOM05D000343 ORTHO05D002777 7.7e-13 77.0 47 80.9
TPR.G10457 Trifolium pratense HOM05D000343 ORTHO05D002777 7.7e-13 77.0 47 80.9
Glyma.05G117300 Glycine max HOM05D000343 ORTHO05D009884 1.0e-12 76.6 47 80.9
arahy.Tifrunner.gnm1.ann1.KT5IG2 Arachis hypogaea HOM05D000343 ORTHO05D002777 1.3e-12 76.3 47 80.9
HanXRQChr03g0066901 Helianthus annuus HOM05D000343 ORTHO05D002777 1.3e-12 76.3 54 74.1
SalBow5G0636 Salvia bowleyana HOM05D000343 ORTHO05D009884 1.3e-12 76.3 54 72.2
SalBow5G2302 Salvia bowleyana HOM05D000343 ORTHO05D009884 1.3e-12 76.3 54 72.2
FvH4_2g11930 Fragaria vesca HOM05D000343 ORTHO05D002777 1.7e-12 75.9 54 72.2
FAN20G2112 Fragaria x ananassa HOM05D000343 ORTHO05D002777 1.7e-12 75.9 54 72.2
FAN24G2206 Fragaria x ananassa HOM05D000343 ORTHO05D002777 1.7e-12 75.9 54 72.2
Lalb_Chr04g0256521 Lupinus albus HOM05D000343 ORTHO05D009884 1.7e-12 75.9 47 78.7
Hund00062 Selenicereus undatus HOM05D000343 ORTHO05D002777 1.7e-12 75.9 54 70.4
vmacro01824 Vaccinium macrocarpon HOM05D000343 ORTHO05D002777 1.7e-12 75.9 54 72.2
RcHm_v2.0_Chr6g0271811 Rosa chinensis HOM05D000343 ORTHO05D009884 2.3e-12 75.5 47 78.7
THA.LOC104804410 Tarenaya hassleriana HOM05D000343 ORTHO05D002777 2.9e-12 75.1 54 70.4
FAN15G3294 Fragaria x ananassa HOM05D000343 ORTHO05D002777 3.8e-12 74.7 54 70.4
SGA_v2.0_scaffold14G07121 Striga asiatica HOM05D000343 ORTHO05D002777 3.8e-12 74.7 60 63.3
Actinidia23995 Actinidia chinensis HOM05D000343 ORTHO05D002777 5.0e-12 74.3 54 72.2
arahy.Tifrunner.gnm1.ann1.8T0CRQ Arachis hypogaea HOM05D000343 ORTHO05D002777 5.0e-12 74.3 47 78.7
Cc02_g21540 Coffea canephora HOM05D000343 ORTHO05D009884 5.0e-12 74.3 54 72.2
ECA240G1089 Erigeron canadensis HOM05D000343 ORTHO05D002777 5.0e-12 74.3 54 72.2
Migut.B00610 Erythranthe guttata HOM05D000343 ORTHO05D002777 5.0e-12 74.3 54 68.5
Lj4g0019087 Lotus japonicus HOM05D000343 ORTHO05D002777 5.0e-12 74.3 47 76.6
QL11p020880 Quercus lobata HOM05D000343 ORTHO05D009884 6.6e-12 73.9 54 70.4
ECA236G2887 Erigeron canadensis HOM05D000343 ORTHO05D009884 8.6e-12 73.6 54 66.7
Eucgr.L00192 Eucalyptus grandis HOM05D000343 ORTHO05D009884 8.6e-12 73.6 39 92.3
FAN27G2388 Fragaria x ananassa HOM05D000343 ORTHO05D002777 8.6e-12 73.6 54 70.4
Aa31sc280G30 Aethionema arabicum HOM05D000343 ORTHO05D002777 1.1e-11 73.2 47 72.3
EL10Ac9g21477 Beta vulgaris HOM05D000343 ORTHO05D002777 1.5e-11 72.8 54 68.5
Oeu000247.4 Olea europaea HOM05D000343 ORTHO05D002777 1.5e-11 72.8 47 76.6
Rhsim11G0136600 Rhododendron simsii HOM05D000343 ORTHO05D002777 1.5e-11 72.8 72 56.9
Ah.01g022360 Amaranthus hybridus HOM05D000343 ORTHO05D002777 1.9e-11 72.4 54 68.5
AL7G18020 Arabidopsis lyrata HOM05D000343 ORTHO05D009884 1.9e-11 72.4 47 72.3
AT4G33520 Arabidopsis thaliana HOM05D000343 ORTHO05D002777 1.9e-11 72.4 47 72.3
MSTRG.16584 Avicennia marina HOM05D000343 ORTHO05D009884 1.9e-11 72.4 47 74.5
Carub.0007s0694 Capsella rubella HOM05D000343 ORTHO05D009884 1.9e-11 72.4 47 72.3
AUR62010134 Chenopodium quinoa HOM05D000343 ORTHO05D002777 1.9e-11 72.4 54 68.5
Gohir.A04G113600 Gossypium hirsutum HOM05D000343 ORTHO05D009884 1.9e-11 72.4 54 66.7
Gohir.D04G154900 Gossypium hirsutum HOM05D000343 ORTHO05D009884 1.9e-11 72.4 54 66.7
Gorai.012G142100 Gossypium raimondii HOM05D000343 ORTHO05D009884 1.9e-11 72.4 54 66.7
Lj9A353G63 Lonicera japonica HOM05D000343 ORTHO05D002777 1.9e-11 72.4 47 74.5
unitig_749.g14153 Utricularia gibba HOM05D000343 ORTHO05D009884 1.9e-11 72.4 54 68.5
CiPaw.05G035500 Carya illinoinensis HOM05D000343 ORTHO05D009884 2.5e-11 72.0 47 76.6
Eucgr.L00195 Eucalyptus grandis HOM05D000343 ORTHO05D009884 2.5e-11 72.0 67 59.7
A01p04740 Brassica napus HOM05D000343 ORTHO05D002777 3.3e-11 71.6 47 72.3
C01p05150 Brassica napus HOM05D000343 ORTHO05D002777 3.3e-11 71.6 47 72.3
BolC1t00495H Brassica oleracea HOM05D000343 ORTHO05D002777 3.3e-11 71.6 47 72.3
BraA01t00457Z Brassica rapa HOM05D000343 ORTHO05D002777 3.3e-11 71.6 47 72.3
BcaC09g52169 Brassica carinata HOM05D000343 ORTHO05D002777 4.2e-11 71.2 47 72.3
AUR62013126 Chenopodium quinoa HOM05D000343 ORTHO05D002777 4.2e-11 71.2 54 64.8
Sed0012395 Sechium edule HOM05D000343 ORTHO05D002777 4.2e-11 71.2 47 74.5
TAR628G1020 Trochodendron aralioides HOM05D000343 ORTHO05D002777 4.2e-11 71.2 54 64.8
BcaB03g12795 Brassica carinata HOM05D000343 ORTHO05D009884 5.5e-11 70.9 47 70.2
A08p17580 Brassica napus HOM05D000343 ORTHO05D009884 5.5e-11 70.9 47 70.2
BraA08t33711Z Brassica rapa HOM05D000343 ORTHO05D009884 5.5e-11 70.9 47 70.2
CARHR241620 Cardamine hirsuta HOM05D000343 ORTHO05D009884 5.5e-11 70.9 47 70.2
Sp7g31260 Schrenkiella parvula HOM05D000343 ORTHO05D002777 5.5e-11 70.9 47 70.2
Potri.003G024000 Populus trichocarpa HOM05D000343 ORTHO05D002777 7.2e-11 70.5 54 70.4
CiPaw.06G153500 Carya illinoinensis HOM05D000343 ORTHO05D002777 9.5e-11 70.1 47 74.5
MELO3C018643.2 Cucumis melo HOM05D000343 ORTHO05D009884 1.2e-10 69.7 54 64.8
CsaV3_7G006490 Cucumis sativus L. HOM05D000343 ORTHO05D009884 1.2e-10 69.7 54 64.8
Sc22g0003160 Simmondsia chinensis HOM05D000343 ORTHO05D002777 1.6e-10 69.3 47 74.5
Nn1g05348 Nelumbo nucifera HOM05D000343 ORTHO05D009884 2.1e-10 68.9 54 64.8
Nn5g30120 Nelumbo nucifera HOM05D000343 ORTHO05D002777 2.1e-10 68.9 54 64.8
Aqoxy6G00797 Aquilegia oxysepala HOM05D000343 ORTHO05D002777 2.8e-10 68.6 54 64.8
ClCG09G015420 Citrullus lanatus HOM05D000343 ORTHO05D009884 2.8e-10 68.6 54 64.8
Oeu007963.1 Olea europaea HOM05D000343 ORTHO05D009884 2.8e-10 68.6 54 64.8
Oeu036419.1 Olea europaea HOM05D000343 ORTHO05D009884 3.6e-10 68.2 47 68.1
BcaC01g00987 Brassica carinata HOM05D000343 ORTHO05D009884 4.7e-10 67.8 47 68.1
C03p86570 Brassica napus HOM05D000343 ORTHO05D009884 4.7e-10 67.8 47 68.1
BolC3t20951H Brassica oleracea HOM05D000343 ORTHO05D009884 4.7e-10 67.8 47 68.1
Eucgr.L00476 Eucalyptus grandis HOM05D000343 ORTHO05D009884 8.0e-10 67.0 54 59.3
HanXRQChr13g0420711 Helianthus annuus HOM05D000343 ORTHO05D009884 8.0e-10 67.0 54 64.8
CSS0022587 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D009884 1.0e-09 66.6 40 80.0
HanXRQChr11g0338131 Helianthus annuus HOM05D000343 ORTHO05D009884 1.8e-09 65.9 54 63.0
ClCG10G009250 Citrullus lanatus HOM05D000343 ORTHO05D002777 3.0e-09 65.1 47 70.2
MELO3C019011.2 Cucumis melo HOM05D000343 ORTHO05D002777 3.0e-09 65.1 47 70.2
MBI02_g08720_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D002777 3.0e-09 65.1 54 61.1
CsaV3_4G009440 Cucumis sativus L. HOM05D000343 ORTHO05D002777 4.0e-09 64.7 47 70.2
Sed0024706 Sechium edule HOM05D000343 ORTHO05D009884 5.2e-09 64.3 54 59.3
TAR376G1172 Trochodendron aralioides HOM05D000343 ORTHO05D009884 2.0e-08 62.4 54 59.3
PSO541G1663 Papaver somniferum HOM05D000343 ORTHO05D002777 3.4e-08 61.6 54 57.4
PSO781G0273 Papaver somniferum HOM05D000343 ORTHO05D002777 3.4e-08 61.6 54 57.4
CDE12G0847 Ceratophyllum demersum HOM05D000343 ORTHO05D002777 4.4e-08 61.2 47 63.8
Peaxi162Scf00001g00124 Petunia axillaris HOM05D000343 ORTHO05D009884 4.4e-08 61.2 40 70.0
HPP92_002330 Vanilla planifolia HOM05D000343 ORTHO05D002777 7.5e-08 60.5 47 63.8
ATR0118G027 Amborella trichopoda HOM05D000343 ORTHO05D002777 9.8e-08 60.1 47 61.7
arahy.Tifrunner.gnm1.ann1.A40AQH Arachis hypogaea HOM05D000343 ORTHO05D002777 9.8e-08 60.1 33 84.8
Lsat_1_v5_gn_7_80921 Lactuca sativa HOM05D000343 ORTHO05D009884 9.8e-08 60.1 54 57.4
Thhalv10024339m.g Eutrema salsugineum HOM05D000343 ORTHO05D002777 1.7e-07 59.3 33 78.8
Hund06383 Selenicereus undatus HOM05D000343 ORTHO05D009884 2.2e-07 58.9 54 55.6
PSO210G0964 Papaver somniferum HOM05D000343 ORTHO05D009884 4.9e-07 57.8 54 57.4
PSO447G0128 Papaver somniferum HOM05D000343 ORTHO05D009884 4.9e-07 57.8 54 57.4
Ca_00135_v3 Cicer arietinum L. HOM05D000343 ORTHO05D009884 6.3e-07 57.4 48 64.6
Lj6g0025417 Lotus japonicus HOM05D000343 ORTHO05D009884 6.3e-07 57.4 47 57.4
Zm00001eb199150 Zea mays HOM05D000343 ORTHO05D002777 3.1e-06 55.1 47 55.3
CDE10G0761 Ceratophyllum demersum HOM05D000343 ORTHO05D009884 4.1e-06 54.7 47 57.4
Peaxi162Scf00152g01020 Petunia axillaris HOM05D000343 ORTHO05D009884 7.0e-06 53.9 44 63.6
Psat1g216600 Pisum sativum HOM05D000343 ORTHO05D009884 7.0e-06 53.9 48 60.4


User provided reference genes

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