Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00219 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.5e-59 232.6 116 100.0
Eucgr.L00173 Eucalyptus grandis HOM05D000343 ORTHO05D009884 6.7e-36 154.1 77 94.8
Eucgr.G00769 Eucalyptus grandis HOM05D000343 ORTHO05D002777 3.9e-28 128.3 101 66.3
Eucgr.G00674 Eucalyptus grandis HOM05D000343 ORTHO05D009884 2.8e-26 122.1 83 74.7
PGR042G3206 Punica granatum HOM05D000343 ORTHO05D002777 7.0e-25 117.5 103 62.1
CSS0044959 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D002777 3.5e-24 115.2 110 57.3
Actinidia00268 Actinidia chinensis HOM05D000343 ORTHO05D002777 4.5e-24 114.8 106 56.6
MD05G1044800 Malus domestica HOM05D000343 ORTHO05D009884 4.5e-24 114.8 103 62.1
Prupe.8G060400 Prunus persica HOM05D000343 ORTHO05D002777 4.5e-24 114.8 103 60.2
vmacro01824 Vaccinium macrocarpon HOM05D000343 ORTHO05D002777 4.5e-24 114.8 106 56.6
Cfa005601 Carpinus fangiana HOM05D000343 ORTHO05D002777 1.0e-23 113.6 103 58.3
MD10G1051800 Malus domestica HOM05D000343 ORTHO05D009884 1.3e-23 113.2 103 60.2
Potri.001G205400 Populus trichocarpa HOM05D000343 ORTHO05D002777 2.2e-23 112.5 94 61.7
AT4G33520 Arabidopsis thaliana HOM05D000343 ORTHO05D002777 3.8e-23 111.7 106 57.5
arahy.Tifrunner.gnm1.ann1.KT5IG2 Arachis hypogaea HOM05D000343 ORTHO05D002777 3.8e-23 111.7 103 57.3
Gohir.A03G173900 Gossypium hirsutum HOM05D000343 ORTHO05D002777 3.8e-23 111.7 94 61.7
Gohir.D02G197000 Gossypium hirsutum HOM05D000343 ORTHO05D009884 3.8e-23 111.7 94 61.7
Gorai.005G220100 Gossypium raimondii HOM05D000343 ORTHO05D009884 3.8e-23 111.7 94 61.7
GSVIVG01038744001 Vitis vinifera HOM05D000343 ORTHO05D009884 3.8e-23 111.7 93 61.3
Duzib248G1573 Durio zibethinus HOM05D000343 ORTHO05D009884 5.0e-23 111.3 108 56.5
Migut.B00610 Erythranthe guttata HOM05D000343 ORTHO05D002777 5.0e-23 111.3 105 56.2
Manes.06G012600 Manihot esculenta HOM05D000343 ORTHO05D002777 5.0e-23 111.3 106 54.7
RcHm_v2.0_Chr6g0271811 Rosa chinensis HOM05D000343 ORTHO05D009884 5.0e-23 111.3 103 58.3
FAN20G2112 Fragaria x ananassa HOM05D000343 ORTHO05D002777 6.5e-23 110.9 103 58.3
CANSAT11G1697 Cannabis sativa HOM05D000343 ORTHO05D002777 8.5e-23 110.5 103 56.3
Eucgr.L00482 Eucalyptus grandis HOM05D000343 ORTHO05D009884 8.5e-23 110.5 76 71.1
FvH4_2g11930 Fragaria vesca HOM05D000343 ORTHO05D002777 8.5e-23 110.5 103 57.3
FAN24G2206 Fragaria x ananassa HOM05D000343 ORTHO05D002777 8.5e-23 110.5 103 57.3
Atru.chr6.1136 Acer truncatum HOM05D000343 ORTHO05D002777 1.1e-22 110.2 103 57.3
arahy.Tifrunner.gnm1.ann1.8T0CRQ Arachis hypogaea HOM05D000343 ORTHO05D002777 1.5e-22 109.8 103 56.3
Cpa.g.sc42.57 Carica papaya HOM05D000343 ORTHO05D009884 1.5e-22 109.8 95 60.0
Actinidia23995 Actinidia chinensis HOM05D000343 ORTHO05D002777 1.9e-22 109.4 106 54.7
Lalb_Chr04g0256521 Lupinus albus HOM05D000343 ORTHO05D009884 1.9e-22 109.4 103 56.3
Medtr4g094232 Medicago truncatula HOM05D000343 ORTHO05D002777 1.9e-22 109.4 100 59.0
Oeu000247.4 Olea europaea HOM05D000343 ORTHO05D002777 1.9e-22 109.4 105 57.1
COL.COLO4_24941 Corchorus olitorius HOM05D000343 ORTHO05D009884 2.5e-22 109.0 103 56.3
Hma1.2p1_0704F.1_g206650 Hydrangea macrophylla HOM05D000343 ORTHO05D002777 2.5e-22 109.0 101 57.4
TWI59G0918 Tripterygium wilfordii HOM05D000343 ORTHO05D002777 2.5e-22 109.0 103 57.3
Duzib132G0085 Durio zibethinus HOM05D000343 ORTHO05D002777 3.2e-22 108.6 103 57.3
Lalb_Chr10g0097841 Lupinus albus HOM05D000343 ORTHO05D002777 3.2e-22 108.6 103 57.3
QL11p020880 Quercus lobata HOM05D000343 ORTHO05D009884 3.2e-22 108.6 106 57.5
AL7G18020 Arabidopsis lyrata HOM05D000343 ORTHO05D009884 4.2e-22 108.2 106 56.6
CiPaw.06G153500 Carya illinoinensis HOM05D000343 ORTHO05D002777 4.2e-22 108.2 103 56.3
Nn5g30120 Nelumbo nucifera HOM05D000343 ORTHO05D002777 4.2e-22 108.2 105 54.3
Carub.0007s0694 Capsella rubella HOM05D000343 ORTHO05D009884 5.5e-22 107.8 96 58.3
Rhsim11G0136600 Rhododendron simsii HOM05D000343 ORTHO05D002777 5.5e-22 107.8 121 52.1
Glyma.08G072400 Glycine max HOM05D000343 ORTHO05D002777 1.2e-21 106.7 103 55.3
Sabra03G0015100 Salix brachista HOM05D000343 ORTHO05D009884 1.2e-21 106.7 105 57.1
FAN15G3294 Fragaria x ananassa HOM05D000343 ORTHO05D002777 1.6e-21 106.3 103 56.3
HanXRQChr03g0066901 Helianthus annuus HOM05D000343 ORTHO05D002777 1.6e-21 106.3 101 58.4
Lsat_1_v5_gn_9_117160 Lactuca sativa HOM05D000343 ORTHO05D002777 1.6e-21 106.3 103 59.2
THA.LOC104804410 Tarenaya hassleriana HOM05D000343 ORTHO05D002777 2.1e-21 105.9 105 55.2
A08p17580 Brassica napus HOM05D000343 ORTHO05D009884 3.6e-21 105.1 101 55.4
BraA08t33711Z Brassica rapa HOM05D000343 ORTHO05D009884 3.6e-21 105.1 101 55.4
Ca_18353_v3 Cicer arietinum L. HOM05D000343 ORTHO05D002777 3.6e-21 105.1 106 55.7
Nitab4.5_0002576g0010 Nicotiana tabacum HOM05D000343 ORTHO05D002777 3.6e-21 105.1 105 55.2
BcaB03g12795 Brassica carinata HOM05D000343 ORTHO05D009884 4.7e-21 104.8 82 61.0
Sp7g31260 Schrenkiella parvula HOM05D000343 ORTHO05D002777 4.7e-21 104.8 96 56.2
Sed0012395 Sechium edule HOM05D000343 ORTHO05D002777 4.7e-21 104.8 104 55.8
TPR.G10457 Trifolium pratense HOM05D000343 ORTHO05D002777 4.7e-21 104.8 92 59.8
VMungo0251G0418 Vigna mungo HOM05D000343 ORTHO05D009884 4.7e-21 104.8 103 53.4
CARHR241620 Cardamine hirsuta HOM05D000343 ORTHO05D009884 6.1e-21 104.4 96 56.2
Lj9A353G63 Lonicera japonica HOM05D000343 ORTHO05D002777 6.1e-21 104.4 78 64.1
TAR628G1020 Trochodendron aralioides HOM05D000343 ORTHO05D002777 6.1e-21 104.4 101 53.5
BcaC09g52169 Brassica carinata HOM05D000343 ORTHO05D002777 8.0e-21 104.0 95 56.8
C01p05150 Brassica napus HOM05D000343 ORTHO05D002777 8.0e-21 104.0 95 56.8
PSO541G1663 Papaver somniferum HOM05D000343 ORTHO05D002777 8.0e-21 104.0 105 55.2
MSTRG.16584 Avicennia marina HOM05D000343 ORTHO05D009884 1.0e-20 103.6 80 66.2
A01p04740 Brassica napus HOM05D000343 ORTHO05D002777 1.0e-20 103.6 95 56.8
Cc02_g21540 Coffea canephora HOM05D000343 ORTHO05D009884 1.0e-20 103.6 109 53.2
Ciclev10030175m.g Citrus clementina HOM05D000343 ORTHO05D009884 1.4e-20 103.2 103 54.4
Glyma.05G117300 Glycine max HOM05D000343 ORTHO05D009884 1.4e-20 103.2 106 55.7
Lj4g0019087 Lotus japonicus HOM05D000343 ORTHO05D002777 1.4e-20 103.2 95 55.8
Hund00062 Selenicereus undatus HOM05D000343 ORTHO05D002777 1.4e-20 103.2 105 52.4
Aa31sc280G30 Aethionema arabicum HOM05D000343 ORTHO05D002777 1.8e-20 102.8 104 55.8
PSO781G0273 Papaver somniferum HOM05D000343 ORTHO05D002777 1.8e-20 102.8 105 55.2
Thecc.02G138700 Theobroma cacao HOM05D000343 ORTHO05D002777 1.8e-20 102.8 101 55.4
FAN27G2388 Fragaria x ananassa HOM05D000343 ORTHO05D002777 2.3e-20 102.4 77 67.5
Solyc01g105160.4 Solanum lycopersicum HOM05D000343 ORTHO05D002777 2.3e-20 102.4 105 54.3
Sopen01g047700 Solanum pennellii HOM05D000343 ORTHO05D009884 2.3e-20 102.4 105 54.3
PGSC0003DMG400012559 Solanum tuberosum HOM05D000343 ORTHO05D009884 2.3e-20 102.4 105 54.3
Phvul.002G208800 Phaseolus vulgaris HOM05D000343 ORTHO05D002777 3.0e-20 102.1 103 51.5
SalBow5G0636 Salvia bowleyana HOM05D000343 ORTHO05D009884 3.0e-20 102.1 103 55.3
SalBow5G2302 Salvia bowleyana HOM05D000343 ORTHO05D009884 3.0e-20 102.1 103 55.3
Ah.01g022360 Amaranthus hybridus HOM05D000343 ORTHO05D002777 4.0e-20 101.7 106 52.8
BraA01t00457Z Brassica rapa HOM05D000343 ORTHO05D002777 4.0e-20 101.7 95 55.8
CAN.G523.72 Capsicum annuum HOM05D000343 ORTHO05D002777 4.0e-20 101.7 103 55.3
C03p86570 Brassica napus HOM05D000343 ORTHO05D009884 5.2e-20 101.3 84 58.3
BolC1t00495H Brassica oleracea HOM05D000343 ORTHO05D002777 5.2e-20 101.3 95 55.8
BolC3t20951H Brassica oleracea HOM05D000343 ORTHO05D009884 5.2e-20 101.3 84 58.3
BcaC01g00987 Brassica carinata HOM05D000343 ORTHO05D009884 6.8e-20 100.9 82 59.8
DCAR_001785 Daucus carota HOM05D000343 ORTHO05D009884 6.8e-20 100.9 97 53.6
CiPaw.05G035500 Carya illinoinensis HOM05D000343 ORTHO05D009884 8.8e-20 100.5 103 53.4
Potri.003G024000 Populus trichocarpa HOM05D000343 ORTHO05D002777 8.8e-20 100.5 105 57.1
Aqoxy6G00797 Aquilegia oxysepala HOM05D000343 ORTHO05D002777 1.2e-19 100.1 101 52.5
SGA_v2.0_scaffold14G07121 Striga asiatica HOM05D000343 ORTHO05D002777 1.2e-19 100.1 109 51.4
Oeu036419.1 Olea europaea HOM05D000343 ORTHO05D009884 1.5e-19 99.8 111 51.4
Nn1g05348 Nelumbo nucifera HOM05D000343 ORTHO05D009884 2.0e-19 99.4 106 52.8
ECA240G1089 Erigeron canadensis HOM05D000343 ORTHO05D002777 2.6e-19 99.0 106 52.8
Eucgr.L00195 Eucalyptus grandis HOM05D000343 ORTHO05D009884 2.6e-19 99.0 86 62.8
Oeu007963.1 Olea europaea HOM05D000343 ORTHO05D009884 4.4e-19 98.2 92 57.6
EL10Ac9g21477 Beta vulgaris HOM05D000343 ORTHO05D002777 5.7e-19 97.8 86 58.1
AUR62010134 Chenopodium quinoa HOM05D000343 ORTHO05D002777 7.5e-19 97.4 102 53.9
Sc22g0003160 Simmondsia chinensis HOM05D000343 ORTHO05D002777 7.5e-19 97.4 94 57.4
ECA236G2887 Erigeron canadensis HOM05D000343 ORTHO05D009884 9.7e-19 97.1 95 53.7
Gohir.A04G113600 Gossypium hirsutum HOM05D000343 ORTHO05D009884 9.7e-19 97.1 86 57.0
Gorai.012G142100 Gossypium raimondii HOM05D000343 ORTHO05D009884 9.7e-19 97.1 86 57.0
TAR376G1172 Trochodendron aralioides HOM05D000343 ORTHO05D009884 9.7e-19 97.1 105 48.6
unitig_749.g14153 Utricularia gibba HOM05D000343 ORTHO05D009884 9.7e-19 97.1 80 60.0
AUR62013126 Chenopodium quinoa HOM05D000343 ORTHO05D002777 1.7e-18 96.3 102 52.0
MELO3C019011.2 Cucumis melo HOM05D000343 ORTHO05D002777 1.7e-18 96.3 99 53.5
ClCG10G009250 Citrullus lanatus HOM05D000343 ORTHO05D002777 2.2e-18 95.9 107 52.3
CsaV3_4G009440 Cucumis sativus L. HOM05D000343 ORTHO05D002777 6.3e-18 94.4 99 53.5
Gohir.D04G154900 Gossypium hirsutum HOM05D000343 ORTHO05D009884 6.3e-18 94.4 126 45.2
HanXRQChr13g0420711 Helianthus annuus HOM05D000343 ORTHO05D009884 2.4e-17 92.4 82 59.8
HanXRQChr11g0338131 Helianthus annuus HOM05D000343 ORTHO05D009884 4.1e-17 91.7 96 52.1
CDE12G0847 Ceratophyllum demersum HOM05D000343 ORTHO05D002777 1.2e-16 90.1 110 47.3
Eucgr.L00476 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.2e-16 90.1 76 57.9
MBI02_g08720_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D002777 1.2e-16 90.1 84 54.8
Eucgr.L00481 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.6e-16 89.7 54 81.5
Hund06383 Selenicereus undatus HOM05D000343 ORTHO05D009884 2.7e-16 89.0 105 47.6
Lsat_1_v5_gn_7_80921 Lactuca sativa HOM05D000343 ORTHO05D009884 3.5e-16 88.6 103 50.5
ClCG09G015420 Citrullus lanatus HOM05D000343 ORTHO05D009884 7.7e-16 87.4 97 48.5
MELO3C018643.2 Cucumis melo HOM05D000343 ORTHO05D009884 7.7e-16 87.4 105 49.5
CsaV3_7G006490 Cucumis sativus L. HOM05D000343 ORTHO05D009884 1.3e-15 86.7 105 48.6
Eucgr.L00192 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.3e-15 86.7 49 89.8
ATR0118G027 Amborella trichopoda HOM05D000343 ORTHO05D002777 1.7e-15 86.3 82 54.9
Sed0024706 Sechium edule HOM05D000343 ORTHO05D009884 2.2e-15 85.9 118 42.4
HPP92_002330 Vanilla planifolia HOM05D000343 ORTHO05D002777 1.5e-14 83.2 99 47.5
CDE10G0761 Ceratophyllum demersum HOM05D000343 ORTHO05D009884 9.4e-14 80.5 106 42.5
PSO210G0964 Papaver somniferum HOM05D000343 ORTHO05D009884 9.4e-14 80.5 108 47.2
Ca_00135_v3 Cicer arietinum L. HOM05D000343 ORTHO05D009884 1.6e-13 79.7 78 57.7
MBI05_g19354_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D009884 1.6e-13 79.7 109 45.0
arahy.Tifrunner.gnm1.ann1.3SZ8AD Arachis hypogaea HOM05D000343 ORTHO05D009884 2.7e-13 79.0 90 45.6
arahy.Tifrunner.gnm1.ann1.HQ4SC1 Arachis hypogaea HOM05D000343 ORTHO05D009884 2.7e-13 79.0 90 45.6
Eucgr.G00759 Eucalyptus grandis HOM05D000343 ORTHO05D009884 3.6e-13 78.6 47 85.1
Eucgr.L00310 Eucalyptus grandis HOM05D000343 ORTHO05D009884 3.6e-13 78.6 47 85.1
Zm00001eb199150 Zea mays HOM05D000343 ORTHO05D002777 3.6e-13 78.6 82 50.0
Eucgr.G00664 Eucalyptus grandis HOM05D000343 ORTHO05D009884 8.0e-13 77.4 47 83.0
Lj6g0025417 Lotus japonicus HOM05D000343 ORTHO05D009884 1.0e-12 77.0 73 52.1
PSO447G0128 Papaver somniferum HOM05D000343 ORTHO05D009884 2.3e-12 75.9 108 45.4
Pp3c22_10860 Physcomitrium patens HOM05D000343 ORTHO05D002777 3.0e-12 75.5 95 45.3
Thhalv10024339m.g Eutrema salsugineum HOM05D000343 ORTHO05D002777 4.0e-12 75.1 62 61.3
TPR.G25247 Trifolium pratense HOM05D000343 ORTHO05D009884 5.2e-12 74.7 80 52.5
HPP92_019306 Vanilla planifolia HOM05D000343 ORTHO05D009884 6.8e-12 74.3 103 43.7
arahy.Tifrunner.gnm1.ann1.A40AQH Arachis hypogaea HOM05D000343 ORTHO05D002777 8.8e-12 73.9 109 42.2
Psat1g216600 Pisum sativum HOM05D000343 ORTHO05D009884 8.8e-12 73.9 81 50.6
Zm00001eb392420 Zea mays HOM05D000343 ORTHO05D009884 8.8e-12 73.9 73 52.1
CSS0022587 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D009884 1.5e-11 73.2 57 64.9
Zm00001eb327860 Zea mays HOM05D000343 ORTHO05D009884 3.4e-11 72.0 75 49.3
Mapoly0071s0034 Marchantia polymorpha HOM05D000343 ORTHO05D002777 5.7e-11 71.2 112 39.3
Os03g0388100 Oryza sativa ssp. japonica HOM05D000343 ORTHO05D009884 5.7e-11 71.2 73 47.9
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 7.5e-11 70.9 91 45.1
Peaxi162Scf00001g00124 Petunia axillaris HOM05D000343 ORTHO05D009884 2.2e-10 69.3 57 61.4
Pp3c18_10710 Physcomitrium patens HOM05D000343 ORTHO05D002777 3.7e-10 68.6 121 40.5
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 6.3e-10 67.8 77 48.1
Glyma.15G053500 Glycine max HOM05D000343 ORTHO05D009884 1.4e-09 66.6 75 49.3
CDE05G0554 Ceratophyllum demersum HOM05D000391 ORTHO05D000293 1.8e-09 66.2 82 45.1
AagrBONN_evm.TU.Sc2ySwM_117.4043 Anthoceros agrestis HOM05D000208 ORTHO05D000130 4.1e-09 65.1 85 47.1
Eucgr.L00180 Eucalyptus grandis HOM05D029851 ORTHO05D029320 5.4e-09 64.7 53 64.2
Medtr7g116990 Medicago truncatula HOM05D000343 ORTHO05D009884 5.4e-09 64.7 80 45.0
SMO011G0027 Selaginella moellendorffii HOM05D000343 ORTHO05D002777 5.4e-09 64.7 101 39.6
Os07g0623200 Oryza sativa ssp. japonica HOM05D000343 ORTHO05D009884 2.0e-08 62.8 75 45.3
Glyma.08G179000 Glycine max HOM05D000343 ORTHO05D009884 3.5e-08 62.0 75 48.0
CBR_g20392 Chara braunii HOM05D000343 ORTHO05D002777 1.0e-07 60.5 82 42.7
Eucgr.G00666 Eucalyptus grandis HOM05D029851 ORTHO05D029320 1.0e-07 60.5 50 62.0
Eucgr.L00174 Eucalyptus grandis HOM05D029851 ORTHO05D029320 1.0e-07 60.5 50 62.0
Lalb_Chr18g0060571 Lupinus albus HOM05D000343 ORTHO05D009884 2.9e-07 58.9 88 40.9
Pp3c19_14990 Physcomitrium patens HOM05D000343 ORTHO05D009884 2.9e-07 58.9 108 35.2
Peaxi162Scf00152g01020 Petunia axillaris HOM05D000343 ORTHO05D009884 8.6e-07 57.4 90 42.2
Cre10.g424775 Chlamydomonas reinhardtii HOM05D000343 ORTHO05D002777 2.5e-06 55.8 103 36.9


User provided reference genes

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