Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00195 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.2e-39 166.0 81 100.0
Eucgr.L00482 Eucalyptus grandis HOM05D000343 ORTHO05D009884 3.6e-28 127.9 81 79.0
Eucgr.G00769 Eucalyptus grandis HOM05D000343 ORTHO05D002777 6.4e-25 117.1 80 72.5
Prupe.8G060400 Prunus persica HOM05D000343 ORTHO05D002777 3.5e-23 111.3 79 68.4
GSVIVG01038744001 Vitis vinifera HOM05D000343 ORTHO05D009884 1.0e-22 109.8 80 66.2
CSS0044959 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D002777 1.3e-22 109.4 79 67.1
Rhsim11G0136600 Rhododendron simsii HOM05D000343 ORTHO05D002777 1.3e-22 109.4 84 65.5
COL.COLO4_24941 Corchorus olitorius HOM05D000343 ORTHO05D009884 3.0e-22 108.2 79 65.8
PGR042G3206 Punica granatum HOM05D000343 ORTHO05D002777 3.0e-22 108.2 79 65.8
Duzib132G0085 Durio zibethinus HOM05D000343 ORTHO05D002777 3.9e-22 107.8 79 67.1
MD10G1051800 Malus domestica HOM05D000343 ORTHO05D009884 6.6e-22 107.1 79 67.1
AL7G18020 Arabidopsis lyrata HOM05D000343 ORTHO05D009884 8.6e-22 106.7 80 63.8
AT4G33520 Arabidopsis thaliana HOM05D000343 ORTHO05D002777 8.6e-22 106.7 80 63.8
Carub.0007s0694 Capsella rubella HOM05D000343 ORTHO05D009884 8.6e-22 106.7 80 63.8
Hma1.2p1_0704F.1_g206650 Hydrangea macrophylla HOM05D000343 ORTHO05D002777 8.6e-22 106.7 79 65.8
BcaC09g52169 Brassica carinata HOM05D000343 ORTHO05D002777 1.1e-21 106.3 80 63.8
Cfa005601 Carpinus fangiana HOM05D000343 ORTHO05D002777 1.1e-21 106.3 79 65.8
MD05G1044800 Malus domestica HOM05D000343 ORTHO05D009884 1.1e-21 106.3 79 67.1
SGA_v2.0_scaffold14G07121 Striga asiatica HOM05D000343 ORTHO05D002777 1.1e-21 106.3 79 64.6
A01p04740 Brassica napus HOM05D000343 ORTHO05D002777 1.5e-21 105.9 80 63.8
FvH4_2g11930 Fragaria vesca HOM05D000343 ORTHO05D002777 1.5e-21 105.9 79 65.8
FAN20G2112 Fragaria x ananassa HOM05D000343 ORTHO05D002777 1.5e-21 105.9 79 65.8
FAN24G2206 Fragaria x ananassa HOM05D000343 ORTHO05D002777 1.5e-21 105.9 79 65.8
Gohir.A03G173900 Gossypium hirsutum HOM05D000343 ORTHO05D002777 1.9e-21 105.5 79 65.8
Gohir.D02G197000 Gossypium hirsutum HOM05D000343 ORTHO05D009884 1.9e-21 105.5 79 65.8
Gorai.005G220100 Gossypium raimondii HOM05D000343 ORTHO05D009884 1.9e-21 105.5 79 65.8
Potri.001G205400 Populus trichocarpa HOM05D000343 ORTHO05D002777 1.9e-21 105.5 79 65.8
BcaB03g12795 Brassica carinata HOM05D000343 ORTHO05D009884 2.5e-21 105.1 80 62.5
A08p17580 Brassica napus HOM05D000343 ORTHO05D009884 2.5e-21 105.1 80 62.5
BraA08t33711Z Brassica rapa HOM05D000343 ORTHO05D009884 2.5e-21 105.1 80 62.5
CARHR241620 Cardamine hirsuta HOM05D000343 ORTHO05D009884 2.5e-21 105.1 80 62.5
RcHm_v2.0_Chr6g0271811 Rosa chinensis HOM05D000343 ORTHO05D009884 2.5e-21 105.1 79 64.6
Sp7g31260 Schrenkiella parvula HOM05D000343 ORTHO05D002777 2.5e-21 105.1 80 62.5
TWI59G0918 Tripterygium wilfordii HOM05D000343 ORTHO05D002777 2.5e-21 105.1 79 64.6
Atru.chr6.1136 Acer truncatum HOM05D000343 ORTHO05D002777 3.3e-21 104.8 79 65.8
Cpa.g.sc42.57 Carica papaya HOM05D000343 ORTHO05D009884 3.3e-21 104.8 79 64.6
Migut.B00610 Erythranthe guttata HOM05D000343 ORTHO05D002777 4.3e-21 104.4 79 63.3
Thecc.02G138700 Theobroma cacao HOM05D000343 ORTHO05D002777 4.3e-21 104.4 79 64.6
BolC1t00495H Brassica oleracea HOM05D000343 ORTHO05D002777 5.6e-21 104.0 80 62.5
BraA01t00457Z Brassica rapa HOM05D000343 ORTHO05D002777 5.6e-21 104.0 80 62.5
Ciclev10030175m.g Citrus clementina HOM05D000343 ORTHO05D009884 5.6e-21 104.0 79 63.3
Actinidia00268 Actinidia chinensis HOM05D000343 ORTHO05D002777 7.3e-21 103.6 79 64.6
FAN27G2388 Fragaria x ananassa HOM05D000343 ORTHO05D002777 7.3e-21 103.6 79 64.6
TAR628G1020 Trochodendron aralioides HOM05D000343 ORTHO05D002777 7.3e-21 103.6 79 63.3
vmacro01824 Vaccinium macrocarpon HOM05D000343 ORTHO05D002777 7.3e-21 103.6 79 64.6
CANSAT11G1697 Cannabis sativa HOM05D000343 ORTHO05D002777 9.5e-21 103.2 79 64.6
Sabra03G0015100 Salix brachista HOM05D000343 ORTHO05D009884 9.5e-21 103.2 79 64.6
Solyc01g105160.4 Solanum lycopersicum HOM05D000343 ORTHO05D002777 9.5e-21 103.2 79 62.0
Sopen01g047700 Solanum pennellii HOM05D000343 ORTHO05D009884 9.5e-21 103.2 79 62.0
PGSC0003DMG400012559 Solanum tuberosum HOM05D000343 ORTHO05D009884 9.5e-21 103.2 79 62.0
THA.LOC104804410 Tarenaya hassleriana HOM05D000343 ORTHO05D002777 9.5e-21 103.2 80 62.5
Nitab4.5_0002576g0010 Nicotiana tabacum HOM05D000343 ORTHO05D002777 1.2e-20 102.8 79 62.0
Manes.06G012600 Manihot esculenta HOM05D000343 ORTHO05D002777 1.6e-20 102.4 79 63.3
BcaC01g00987 Brassica carinata HOM05D000343 ORTHO05D009884 2.1e-20 102.1 80 61.2
C03p86570 Brassica napus HOM05D000343 ORTHO05D009884 2.1e-20 102.1 80 61.2
BolC3t20951H Brassica oleracea HOM05D000343 ORTHO05D009884 2.1e-20 102.1 80 61.2
Cc02_g21540 Coffea canephora HOM05D000343 ORTHO05D009884 2.1e-20 102.1 79 63.3
Lsat_1_v5_gn_9_117160 Lactuca sativa HOM05D000343 ORTHO05D002777 2.1e-20 102.1 79 65.8
Duzib248G1573 Durio zibethinus HOM05D000343 ORTHO05D009884 2.8e-20 101.7 79 62.0
Ah.01g022360 Amaranthus hybridus HOM05D000343 ORTHO05D002777 3.6e-20 101.3 79 63.3
DCAR_001785 Daucus carota HOM05D000343 ORTHO05D009884 3.6e-20 101.3 79 60.8
FAN15G3294 Fragaria x ananassa HOM05D000343 ORTHO05D002777 3.6e-20 101.3 79 63.3
Oeu000247.4 Olea europaea HOM05D000343 ORTHO05D002777 3.6e-20 101.3 79 63.3
SalBow5G0636 Salvia bowleyana HOM05D000343 ORTHO05D009884 3.6e-20 101.3 79 62.0
SalBow5G2302 Salvia bowleyana HOM05D000343 ORTHO05D009884 3.6e-20 101.3 79 62.0
Aa31sc280G30 Aethionema arabicum HOM05D000343 ORTHO05D002777 6.2e-20 100.5 80 60.0
QL11p020880 Quercus lobata HOM05D000343 ORTHO05D009884 6.2e-20 100.5 79 62.0
Actinidia23995 Actinidia chinensis HOM05D000343 ORTHO05D002777 8.0e-20 100.1 79 63.3
MSTRG.16584 Avicennia marina HOM05D000343 ORTHO05D009884 8.0e-20 100.1 79 60.8
EL10Ac9g21477 Beta vulgaris HOM05D000343 ORTHO05D002777 8.0e-20 100.1 79 63.3
Ca_18353_v3 Cicer arietinum L. HOM05D000343 ORTHO05D002777 8.0e-20 100.1 78 62.8
Lalb_Chr10g0097841 Lupinus albus HOM05D000343 ORTHO05D002777 8.0e-20 100.1 79 62.0
VMungo0251G0418 Vigna mungo HOM05D000343 ORTHO05D009884 8.0e-20 100.1 79 60.8
arahy.Tifrunner.gnm1.ann1.KT5IG2 Arachis hypogaea HOM05D000343 ORTHO05D002777 1.1e-19 99.8 79 62.0
CiPaw.06G153500 Carya illinoinensis HOM05D000343 ORTHO05D002777 1.1e-19 99.8 79 62.0
Eucgr.L00219 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.1e-19 99.8 86 62.8
Glyma.08G072400 Glycine max HOM05D000343 ORTHO05D002777 1.1e-19 99.8 79 62.0
CiPaw.05G035500 Carya illinoinensis HOM05D000343 ORTHO05D009884 1.4e-19 99.4 79 62.0
Sc22g0003160 Simmondsia chinensis HOM05D000343 ORTHO05D002777 1.4e-19 99.4 79 63.3
TPR.G10457 Trifolium pratense HOM05D000343 ORTHO05D002777 1.4e-19 99.4 78 62.8
C01p05150 Brassica napus HOM05D000343 ORTHO05D002777 1.8e-19 99.0 80 61.2
Lj9A353G63 Lonicera japonica HOM05D000343 ORTHO05D002777 1.8e-19 99.0 79 59.5
Medtr4g094232 Medicago truncatula HOM05D000343 ORTHO05D002777 1.8e-19 99.0 78 62.8
Nn1g05348 Nelumbo nucifera HOM05D000343 ORTHO05D009884 1.8e-19 99.0 79 60.8
ECA240G1089 Erigeron canadensis HOM05D000343 ORTHO05D002777 2.3e-19 98.6 79 65.8
Nn5g30120 Nelumbo nucifera HOM05D000343 ORTHO05D002777 2.3e-19 98.6 78 61.5
AUR62010134 Chenopodium quinoa HOM05D000343 ORTHO05D002777 3.1e-19 98.2 79 62.0
Lalb_Chr04g0256521 Lupinus albus HOM05D000343 ORTHO05D009884 3.1e-19 98.2 79 60.8
arahy.Tifrunner.gnm1.ann1.8T0CRQ Arachis hypogaea HOM05D000343 ORTHO05D002777 4.0e-19 97.8 79 60.8
Glyma.05G117300 Glycine max HOM05D000343 ORTHO05D009884 4.0e-19 97.8 79 60.8
CAN.G523.72 Capsicum annuum HOM05D000343 ORTHO05D002777 5.2e-19 97.4 79 60.8
Sed0012395 Sechium edule HOM05D000343 ORTHO05D002777 5.2e-19 97.4 79 60.8
Hund00062 Selenicereus undatus HOM05D000343 ORTHO05D002777 5.2e-19 97.4 79 59.5
AUR62013126 Chenopodium quinoa HOM05D000343 ORTHO05D002777 6.8e-19 97.1 79 59.5
HanXRQChr03g0066901 Helianthus annuus HOM05D000343 ORTHO05D002777 6.8e-19 97.1 79 62.0
Lj4g0019087 Lotus japonicus HOM05D000343 ORTHO05D002777 6.8e-19 97.1 79 59.5
Phvul.002G208800 Phaseolus vulgaris HOM05D000343 ORTHO05D002777 6.8e-19 97.1 79 59.5
unitig_749.g14153 Utricularia gibba HOM05D000343 ORTHO05D009884 6.8e-19 97.1 79 58.2
Aqoxy6G00797 Aquilegia oxysepala HOM05D000343 ORTHO05D002777 8.9e-19 96.7 79 59.5
Oeu007963.1 Olea europaea HOM05D000343 ORTHO05D009884 1.2e-18 96.3 79 59.5
Oeu036419.1 Olea europaea HOM05D000343 ORTHO05D009884 1.5e-18 95.9 79 58.2
Eucgr.L00173 Eucalyptus grandis HOM05D000343 ORTHO05D009884 2.0e-18 95.5 86 60.5
Eucgr.L00476 Eucalyptus grandis HOM05D000343 ORTHO05D009884 3.4e-18 94.7 80 56.2
HanXRQChr13g0420711 Helianthus annuus HOM05D000343 ORTHO05D009884 1.3e-17 92.8 79 59.5
PSO781G0273 Papaver somniferum HOM05D000343 ORTHO05D002777 1.7e-17 92.4 79 57.0
Potri.003G024000 Populus trichocarpa HOM05D000343 ORTHO05D002777 1.7e-17 92.4 79 60.8
TAR376G1172 Trochodendron aralioides HOM05D000343 ORTHO05D009884 2.2e-17 92.0 79 58.2
CSS0022587 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D009884 2.9e-17 91.7 49 81.6
MELO3C019011.2 Cucumis melo HOM05D000343 ORTHO05D002777 3.7e-17 91.3 79 58.2
CsaV3_4G009440 Cucumis sativus L. HOM05D000343 ORTHO05D002777 4.9e-17 90.9 79 58.2
Gohir.A04G113600 Gossypium hirsutum HOM05D000343 ORTHO05D009884 8.3e-17 90.1 78 57.7
Gorai.012G142100 Gossypium raimondii HOM05D000343 ORTHO05D009884 8.3e-17 90.1 78 57.7
MBI02_g08720_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D002777 8.3e-17 90.1 79 55.7
Peaxi162Scf00001g00124 Petunia axillaris HOM05D000343 ORTHO05D009884 8.3e-17 90.1 49 79.6
Thhalv10024339m.g Eutrema salsugineum HOM05D000343 ORTHO05D002777 1.1e-16 89.7 50 78.0
Gohir.D04G154900 Gossypium hirsutum HOM05D000343 ORTHO05D009884 1.1e-16 89.7 78 57.7
ClCG10G009250 Citrullus lanatus HOM05D000343 ORTHO05D002777 2.4e-16 88.6 79 57.0
PSO541G1663 Papaver somniferum HOM05D000343 ORTHO05D002777 2.4e-16 88.6 79 55.7
ClCG09G015420 Citrullus lanatus HOM05D000343 ORTHO05D009884 9.2e-16 86.7 78 55.1
MELO3C018643.2 Cucumis melo HOM05D000343 ORTHO05D009884 1.6e-15 85.9 78 55.1
CsaV3_7G006490 Cucumis sativus L. HOM05D000343 ORTHO05D009884 1.6e-15 85.9 78 55.1
Hund06383 Selenicereus undatus HOM05D000343 ORTHO05D009884 1.6e-15 85.9 78 53.8
ATR0118G027 Amborella trichopoda HOM05D000343 ORTHO05D002777 2.0e-15 85.5 79 51.9
Sed0024706 Sechium edule HOM05D000343 ORTHO05D009884 2.0e-15 85.5 79 51.9
PSO210G0964 Papaver somniferum HOM05D000343 ORTHO05D009884 2.7e-15 85.1 78 56.4
ECA236G2887 Erigeron canadensis HOM05D000343 ORTHO05D009884 7.8e-15 83.6 78 53.8
Eucgr.G00674 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.3e-14 82.8 71 62.0
HanXRQChr11g0338131 Helianthus annuus HOM05D000343 ORTHO05D009884 1.7e-14 82.4 79 53.2
Lj6g0025417 Lotus japonicus HOM05D000343 ORTHO05D009884 1.7e-14 82.4 79 50.6
PSO447G0128 Papaver somniferum HOM05D000343 ORTHO05D009884 1.7e-14 82.4 78 55.1
Lsat_1_v5_gn_7_80921 Lactuca sativa HOM05D000343 ORTHO05D009884 3.0e-14 81.6 78 52.6
CDE10G0761 Ceratophyllum demersum HOM05D000343 ORTHO05D009884 3.9e-14 81.3 79 50.6
CDE12G0847 Ceratophyllum demersum HOM05D000343 ORTHO05D002777 3.9e-14 81.3 79 50.6
Zm00001eb392420 Zea mays HOM05D000343 ORTHO05D009884 8.6e-14 80.1 79 50.6
HPP92_002330 Vanilla planifolia HOM05D000343 ORTHO05D002777 1.1e-13 79.7 78 51.3
arahy.Tifrunner.gnm1.ann1.A40AQH Arachis hypogaea HOM05D000343 ORTHO05D002777 4.3e-13 77.8 49 71.4
Zm00001eb199150 Zea mays HOM05D000343 ORTHO05D002777 4.3e-13 77.8 79 46.8
Eucgr.L00481 Eucalyptus grandis HOM05D000343 ORTHO05D009884 7.3e-13 77.0 71 57.7
arahy.Tifrunner.gnm1.ann1.3SZ8AD Arachis hypogaea HOM05D000343 ORTHO05D009884 9.5e-13 76.6 78 48.7
arahy.Tifrunner.gnm1.ann1.HQ4SC1 Arachis hypogaea HOM05D000343 ORTHO05D009884 9.5e-13 76.6 78 48.7
Os03g0388100 Oryza sativa ssp. japonica HOM05D000343 ORTHO05D009884 9.5e-13 76.6 79 45.6
Ca_00135_v3 Cicer arietinum L. HOM05D000343 ORTHO05D009884 1.2e-12 76.3 79 51.9
MBI05_g19354_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D009884 1.6e-12 75.9 79 48.1
Peaxi162Scf00152g01020 Petunia axillaris HOM05D000343 ORTHO05D009884 8.1e-12 73.6 49 69.4
TPR.G25247 Trifolium pratense HOM05D000343 ORTHO05D009884 1.1e-11 73.2 81 50.6
Eucgr.G00759 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.8e-11 72.4 67 59.7
Eucgr.L00310 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.8e-11 72.4 67 59.7
Psat1g216600 Pisum sativum HOM05D000343 ORTHO05D009884 3.1e-11 71.6 77 49.4
Zm00001eb327860 Zea mays HOM05D000343 ORTHO05D009884 1.2e-10 69.7 78 43.6
AagrBONN_evm.TU.Sc2ySwM_117.4043 Anthoceros agrestis HOM05D000208 ORTHO05D000130 1.5e-10 69.3 81 49.4
Eucgr.G00664 Eucalyptus grandis HOM05D000343 ORTHO05D009884 3.4e-10 68.2 67 56.7
Glyma.15G053500 Glycine max HOM05D000343 ORTHO05D009884 3.4e-10 68.2 78 47.4
Mapoly0071s0034 Marchantia polymorpha HOM05D000343 ORTHO05D002777 4.4e-10 67.8 81 44.4
HPP92_019306 Vanilla planifolia HOM05D000343 ORTHO05D009884 4.4e-10 67.8 78 46.2
Pp3c22_10860 Physcomitrium patens HOM05D000343 ORTHO05D002777 5.8e-10 67.4 81 46.9
Eucgr.L00192 Eucalyptus grandis HOM05D000343 ORTHO05D009884 7.5e-10 67.0 58 63.8
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 1.7e-09 65.9 78 44.9
Os07g0623200 Oryza sativa ssp. japonica HOM05D000343 ORTHO05D009884 2.9e-09 65.1 78 42.3
CDE05G0554 Ceratophyllum demersum HOM05D000391 ORTHO05D000293 4.9e-09 64.3 79 43.0
Pp3c18_10710 Physcomitrium patens HOM05D000343 ORTHO05D002777 6.4e-09 63.9 83 43.4
Glyma.08G179000 Glycine max HOM05D000343 ORTHO05D009884 8.3e-09 63.5 78 46.2
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 1.9e-08 62.4 39 71.8
Medtr7g116990 Medicago truncatula HOM05D000343 ORTHO05D009884 1.9e-08 62.4 81 43.2
SMO011G0027 Selaginella moellendorffii HOM05D000343 ORTHO05D002777 1.9e-08 62.4 79 43.0
CBR_g20392 Chara braunii HOM05D000343 ORTHO05D002777 4.1e-08 61.2 81 44.4
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 1.6e-07 59.3 78 42.3
SEGI_22608 Sequoiadendron giganteum HOM05D000343 ORTHO05D002777 2.1e-07 58.9 50 54.0
Pp3c19_14990 Physcomitrium patens HOM05D000343 ORTHO05D009884 1.7e-06 55.8 79 40.5


User provided reference genes

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