Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00173 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.3e-38 162.5 77 100.0
Eucgr.L00219 Eucalyptus grandis HOM05D000343 ORTHO05D009884 4.5e-36 154.1 77 94.8
Eucgr.G00769 Eucalyptus grandis HOM05D000343 ORTHO05D002777 3.3e-23 111.3 74 75.7
MD10G1051800 Malus domestica HOM05D000343 ORTHO05D009884 2.4e-21 105.1 74 73.0
PGR042G3206 Punica granatum HOM05D000343 ORTHO05D002777 3.1e-21 104.8 74 70.3
MD05G1044800 Malus domestica HOM05D000343 ORTHO05D009884 9.0e-21 103.2 74 71.6
Prupe.8G060400 Prunus persica HOM05D000343 ORTHO05D002777 9.0e-21 103.2 74 70.3
Eucgr.L00482 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.2e-20 102.8 73 68.5
Gohir.A03G173900 Gossypium hirsutum HOM05D000343 ORTHO05D002777 1.2e-20 102.8 74 70.3
Gohir.D02G197000 Gossypium hirsutum HOM05D000343 ORTHO05D009884 1.2e-20 102.8 74 70.3
Gorai.005G220100 Gossypium raimondii HOM05D000343 ORTHO05D009884 1.2e-20 102.8 74 70.3
GSVIVG01038744001 Vitis vinifera HOM05D000343 ORTHO05D009884 1.2e-20 102.8 74 68.9
Potri.001G205400 Populus trichocarpa HOM05D000343 ORTHO05D002777 2.6e-20 101.7 74 68.9
CSS0044959 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D002777 3.4e-20 101.3 74 68.9
COL.COLO4_24941 Corchorus olitorius HOM05D000343 ORTHO05D009884 5.9e-20 100.5 74 67.6
RcHm_v2.0_Chr6g0271811 Rosa chinensis HOM05D000343 ORTHO05D009884 7.6e-20 100.1 74 68.9
Duzib132G0085 Durio zibethinus HOM05D000343 ORTHO05D002777 1.0e-19 99.8 74 68.9
FvH4_2g11930 Fragaria vesca HOM05D000343 ORTHO05D002777 1.3e-19 99.4 74 68.9
FAN20G2112 Fragaria x ananassa HOM05D000343 ORTHO05D002777 1.3e-19 99.4 74 68.9
FAN24G2206 Fragaria x ananassa HOM05D000343 ORTHO05D002777 1.3e-19 99.4 74 68.9
AL7G18020 Arabidopsis lyrata HOM05D000343 ORTHO05D009884 1.7e-19 99.0 74 64.9
AT4G33520 Arabidopsis thaliana HOM05D000343 ORTHO05D002777 1.7e-19 99.0 74 64.9
Carub.0007s0694 Capsella rubella HOM05D000343 ORTHO05D009884 1.7e-19 99.0 74 64.9
Cfa005601 Carpinus fangiana HOM05D000343 ORTHO05D002777 1.7e-19 99.0 74 67.6
Migut.B00610 Erythranthe guttata HOM05D000343 ORTHO05D002777 1.7e-19 99.0 74 67.6
Nitab4.5_0002576g0010 Nicotiana tabacum HOM05D000343 ORTHO05D002777 1.7e-19 99.0 74 67.6
Atru.chr6.1136 Acer truncatum HOM05D000343 ORTHO05D002777 2.2e-19 98.6 74 67.6
Duzib248G1573 Durio zibethinus HOM05D000343 ORTHO05D009884 2.2e-19 98.6 74 66.2
Hma1.2p1_0704F.1_g206650 Hydrangea macrophylla HOM05D000343 ORTHO05D002777 2.2e-19 98.6 74 67.6
MSTRG.16584 Avicennia marina HOM05D000343 ORTHO05D009884 2.9e-19 98.2 72 69.4
C01p05150 Brassica napus HOM05D000343 ORTHO05D002777 2.9e-19 98.2 74 64.9
CANSAT11G1697 Cannabis sativa HOM05D000343 ORTHO05D002777 2.9e-19 98.2 74 66.2
Cpa.g.sc42.57 Carica papaya HOM05D000343 ORTHO05D009884 2.9e-19 98.2 76 65.8
Lsat_1_v5_gn_9_117160 Lactuca sativa HOM05D000343 ORTHO05D002777 2.9e-19 98.2 74 70.3
BcaC09g52169 Brassica carinata HOM05D000343 ORTHO05D002777 3.8e-19 97.8 74 64.9
Manes.06G012600 Manihot esculenta HOM05D000343 ORTHO05D002777 3.8e-19 97.8 74 66.2
Oeu000247.4 Olea europaea HOM05D000343 ORTHO05D002777 3.8e-19 97.8 74 67.6
TWI59G0918 Tripterygium wilfordii HOM05D000343 ORTHO05D002777 3.8e-19 97.8 74 66.2
BcaB03g12795 Brassica carinata HOM05D000343 ORTHO05D009884 5.0e-19 97.4 74 63.5
A01p04740 Brassica napus HOM05D000343 ORTHO05D002777 5.0e-19 97.4 74 64.9
A08p17580 Brassica napus HOM05D000343 ORTHO05D009884 5.0e-19 97.4 74 63.5
BraA08t33711Z Brassica rapa HOM05D000343 ORTHO05D009884 5.0e-19 97.4 74 63.5
CARHR241620 Cardamine hirsuta HOM05D000343 ORTHO05D009884 5.0e-19 97.4 74 63.5
Sabra03G0015100 Salix brachista HOM05D000343 ORTHO05D009884 5.0e-19 97.4 74 67.6
Sp7g31260 Schrenkiella parvula HOM05D000343 ORTHO05D002777 5.0e-19 97.4 74 63.5
FAN27G2388 Fragaria x ananassa HOM05D000343 ORTHO05D002777 6.5e-19 97.1 74 67.6
vmacro01824 Vaccinium macrocarpon HOM05D000343 ORTHO05D002777 6.5e-19 97.1 74 67.6
arahy.Tifrunner.gnm1.ann1.KT5IG2 Arachis hypogaea HOM05D000343 ORTHO05D002777 8.5e-19 96.7 74 66.2
Solyc01g105160.4 Solanum lycopersicum HOM05D000343 ORTHO05D002777 8.5e-19 96.7 74 64.9
Sopen01g047700 Solanum pennellii HOM05D000343 ORTHO05D009884 8.5e-19 96.7 74 64.9
PGSC0003DMG400012559 Solanum tuberosum HOM05D000343 ORTHO05D009884 8.5e-19 96.7 74 64.9
Thecc.02G138700 Theobroma cacao HOM05D000343 ORTHO05D002777 8.5e-19 96.7 74 66.2
Aa31sc280G30 Aethionema arabicum HOM05D000343 ORTHO05D002777 1.1e-18 96.3 74 63.5
Eucgr.G00674 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.1e-18 96.3 49 91.8
SalBow5G0636 Salvia bowleyana HOM05D000343 ORTHO05D009884 1.1e-18 96.3 74 64.9
SalBow5G2302 Salvia bowleyana HOM05D000343 ORTHO05D009884 1.1e-18 96.3 74 64.9
CAN.G523.72 Capsicum annuum HOM05D000343 ORTHO05D002777 1.4e-18 95.9 74 64.9
Ca_18353_v3 Cicer arietinum L. HOM05D000343 ORTHO05D002777 1.4e-18 95.9 71 69.0
Ciclev10030175m.g Citrus clementina HOM05D000343 ORTHO05D009884 1.4e-18 95.9 74 64.9
Glyma.08G072400 Glycine max HOM05D000343 ORTHO05D002777 1.4e-18 95.9 74 66.2
THA.LOC104804410 Tarenaya hassleriana HOM05D000343 ORTHO05D002777 1.4e-18 95.9 74 63.5
Actinidia00268 Actinidia chinensis HOM05D000343 ORTHO05D002777 1.9e-18 95.5 74 66.2
BolC1t00495H Brassica oleracea HOM05D000343 ORTHO05D002777 1.9e-18 95.5 74 63.5
BraA01t00457Z Brassica rapa HOM05D000343 ORTHO05D002777 1.9e-18 95.5 74 63.5
Lalb_Chr10g0097841 Lupinus albus HOM05D000343 ORTHO05D002777 1.9e-18 95.5 74 66.2
VMungo0251G0418 Vigna mungo HOM05D000343 ORTHO05D009884 1.9e-18 95.5 74 64.9
C03p86570 Brassica napus HOM05D000343 ORTHO05D009884 2.5e-18 95.1 76 60.5
BolC3t20951H Brassica oleracea HOM05D000343 ORTHO05D009884 2.5e-18 95.1 76 60.5
Lj9A353G63 Lonicera japonica HOM05D000343 ORTHO05D002777 2.5e-18 95.1 74 62.2
arahy.Tifrunner.gnm1.ann1.8T0CRQ Arachis hypogaea HOM05D000343 ORTHO05D002777 3.2e-18 94.7 74 64.9
Eucgr.L00195 Eucalyptus grandis HOM05D000343 ORTHO05D009884 3.2e-18 94.7 86 60.5
FAN15G3294 Fragaria x ananassa HOM05D000343 ORTHO05D002777 3.2e-18 94.7 74 66.2
HanXRQChr03g0066901 Helianthus annuus HOM05D000343 ORTHO05D002777 3.2e-18 94.7 74 67.6
Medtr4g094232 Medicago truncatula HOM05D000343 ORTHO05D002777 3.2e-18 94.7 71 69.0
TPR.G10457 Trifolium pratense HOM05D000343 ORTHO05D002777 3.2e-18 94.7 71 67.6
BcaC01g00987 Brassica carinata HOM05D000343 ORTHO05D009884 4.2e-18 94.4 74 62.2
Hund00062 Selenicereus undatus HOM05D000343 ORTHO05D002777 4.2e-18 94.4 74 63.5
Cc02_g21540 Coffea canephora HOM05D000343 ORTHO05D009884 5.5e-18 94.0 74 64.9
DCAR_001785 Daucus carota HOM05D000343 ORTHO05D009884 5.5e-18 94.0 74 62.2
ECA240G1089 Erigeron canadensis HOM05D000343 ORTHO05D002777 5.5e-18 94.0 74 66.2
Glyma.05G117300 Glycine max HOM05D000343 ORTHO05D009884 5.5e-18 94.0 74 64.9
QL11p020880 Quercus lobata HOM05D000343 ORTHO05D009884 5.5e-18 94.0 74 64.9
Actinidia23995 Actinidia chinensis HOM05D000343 ORTHO05D002777 7.2e-18 93.6 74 64.9
CiPaw.06G153500 Carya illinoinensis HOM05D000343 ORTHO05D002777 7.2e-18 93.6 74 64.9
Lalb_Chr04g0256521 Lupinus albus HOM05D000343 ORTHO05D009884 7.2e-18 93.6 74 64.9
Lj4g0019087 Lotus japonicus HOM05D000343 ORTHO05D002777 9.3e-18 93.2 74 63.5
SGA_v2.0_scaffold14G07121 Striga asiatica HOM05D000343 ORTHO05D002777 9.3e-18 93.2 80 62.5
CiPaw.05G035500 Carya illinoinensis HOM05D000343 ORTHO05D009884 1.2e-17 92.8 74 64.9
Phvul.002G208800 Phaseolus vulgaris HOM05D000343 ORTHO05D002777 1.2e-17 92.8 74 62.2
TAR628G1020 Trochodendron aralioides HOM05D000343 ORTHO05D002777 1.2e-17 92.8 74 62.2
Sed0012395 Sechium edule HOM05D000343 ORTHO05D002777 1.6e-17 92.4 74 63.5
Ah.01g022360 Amaranthus hybridus HOM05D000343 ORTHO05D002777 2.1e-17 92.0 74 62.2
Nn5g30120 Nelumbo nucifera HOM05D000343 ORTHO05D002777 2.1e-17 92.0 74 63.5
Oeu007963.1 Olea europaea HOM05D000343 ORTHO05D009884 2.1e-17 92.0 72 63.9
unitig_749.g14153 Utricularia gibba HOM05D000343 ORTHO05D009884 2.1e-17 92.0 72 63.9
Rhsim11G0136600 Rhododendron simsii HOM05D000343 ORTHO05D002777 3.6e-17 91.3 92 57.6
Aqoxy6G00797 Aquilegia oxysepala HOM05D000343 ORTHO05D002777 4.6e-17 90.9 74 62.2
EL10Ac9g21477 Beta vulgaris HOM05D000343 ORTHO05D002777 6.1e-17 90.5 74 62.2
PSO541G1663 Papaver somniferum HOM05D000343 ORTHO05D002777 6.1e-17 90.5 74 60.8
Eucgr.L00481 Eucalyptus grandis HOM05D000343 ORTHO05D009884 7.9e-17 90.1 64 73.4
Nn1g05348 Nelumbo nucifera HOM05D000343 ORTHO05D009884 7.9e-17 90.1 72 62.5
Oeu036419.1 Olea europaea HOM05D000343 ORTHO05D009884 7.9e-17 90.1 74 60.8
Sc22g0003160 Simmondsia chinensis HOM05D000343 ORTHO05D002777 1.0e-16 89.7 74 63.5
Eucgr.L00476 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.3e-16 89.4 76 56.6
AUR62010134 Chenopodium quinoa HOM05D000343 ORTHO05D002777 1.8e-16 89.0 74 60.8
PSO781G0273 Papaver somniferum HOM05D000343 ORTHO05D002777 1.8e-16 89.0 74 60.8
Gohir.A04G113600 Gossypium hirsutum HOM05D000343 ORTHO05D009884 3.0e-16 88.2 74 59.5
Gorai.012G142100 Gossypium raimondii HOM05D000343 ORTHO05D009884 3.0e-16 88.2 74 59.5
Potri.003G024000 Populus trichocarpa HOM05D000343 ORTHO05D002777 3.0e-16 88.2 74 63.5
AUR62013126 Chenopodium quinoa HOM05D000343 ORTHO05D002777 3.9e-16 87.8 74 58.1
Gohir.D04G154900 Gossypium hirsutum HOM05D000343 ORTHO05D009884 3.9e-16 87.8 74 59.5
HanXRQChr13g0420711 Helianthus annuus HOM05D000343 ORTHO05D009884 5.1e-16 87.4 74 62.2
ECA236G2887 Erigeron canadensis HOM05D000343 ORTHO05D009884 8.7e-16 86.7 71 62.0
MELO3C019011.2 Cucumis melo HOM05D000343 ORTHO05D002777 1.5e-15 85.9 74 60.8
CsaV3_4G009440 Cucumis sativus L. HOM05D000343 ORTHO05D002777 1.9e-15 85.5 74 60.8
CDE12G0847 Ceratophyllum demersum HOM05D000343 ORTHO05D002777 4.3e-15 84.3 74 56.8
HanXRQChr11g0338131 Helianthus annuus HOM05D000343 ORTHO05D009884 4.3e-15 84.3 74 59.5
ClCG10G009250 Citrullus lanatus HOM05D000343 ORTHO05D002777 1.3e-14 82.8 74 59.5
TAR376G1172 Trochodendron aralioides HOM05D000343 ORTHO05D009884 1.3e-14 82.8 74 58.1
Eucgr.L00192 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.6e-14 82.4 45 93.3
MBI02_g08720_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D002777 1.6e-14 82.4 74 56.8
Eucgr.G00759 Eucalyptus grandis HOM05D000343 ORTHO05D009884 6.3e-14 80.5 47 87.2
Eucgr.L00310 Eucalyptus grandis HOM05D000343 ORTHO05D009884 6.3e-14 80.5 47 87.2
ATR0118G027 Amborella trichopoda HOM05D000343 ORTHO05D002777 8.2e-14 80.1 74 56.8
ClCG09G015420 Citrullus lanatus HOM05D000343 ORTHO05D009884 1.4e-13 79.3 71 56.3
Eucgr.G00664 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.4e-13 79.3 47 85.1
MELO3C018643.2 Cucumis melo HOM05D000343 ORTHO05D009884 2.4e-13 78.6 71 56.3
CsaV3_7G006490 Cucumis sativus L. HOM05D000343 ORTHO05D009884 2.4e-13 78.6 71 56.3
Sed0024706 Sechium edule HOM05D000343 ORTHO05D009884 3.1e-13 78.2 72 52.8
Hund06383 Selenicereus undatus HOM05D000343 ORTHO05D009884 5.3e-13 77.4 71 53.5
Lsat_1_v5_gn_7_80921 Lactuca sativa HOM05D000343 ORTHO05D009884 9.1e-13 76.6 71 56.3
HPP92_002330 Vanilla planifolia HOM05D000343 ORTHO05D002777 9.1e-13 76.6 74 54.1
CDE10G0761 Ceratophyllum demersum HOM05D000343 ORTHO05D009884 2.6e-12 75.1 74 54.1
MBI05_g19354_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D009884 3.4e-12 74.7 74 54.1
PSO210G0964 Papaver somniferum HOM05D000343 ORTHO05D009884 5.9e-12 73.9 71 57.7
Ca_00135_v3 Cicer arietinum L. HOM05D000343 ORTHO05D009884 1.0e-11 73.2 75 56.0
PSO447G0128 Papaver somniferum HOM05D000343 ORTHO05D009884 1.3e-11 72.8 71 57.7
Lj6g0025417 Lotus japonicus HOM05D000343 ORTHO05D009884 1.7e-11 72.4 72 50.0
Zm00001eb199150 Zea mays HOM05D000343 ORTHO05D002777 1.7e-11 72.4 74 50.0
Zm00001eb392420 Zea mays HOM05D000343 ORTHO05D009884 1.7e-11 72.4 72 52.8
Pp3c22_10860 Physcomitrium patens HOM05D000343 ORTHO05D002777 2.2e-11 72.0 76 50.0
Thhalv10024339m.g Eutrema salsugineum HOM05D000343 ORTHO05D002777 2.9e-11 71.6 62 59.7
arahy.Tifrunner.gnm1.ann1.A40AQH Arachis hypogaea HOM05D000343 ORTHO05D002777 6.5e-11 70.5 62 59.7
CSS0022587 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D009884 1.1e-10 69.7 57 63.2
Psat1g216600 Pisum sativum HOM05D000343 ORTHO05D009884 1.9e-10 68.9 75 52.0
arahy.Tifrunner.gnm1.ann1.3SZ8AD Arachis hypogaea HOM05D000343 ORTHO05D009884 3.2e-10 68.2 71 49.3
arahy.Tifrunner.gnm1.ann1.HQ4SC1 Arachis hypogaea HOM05D000343 ORTHO05D009884 3.2e-10 68.2 71 49.3
TPR.G25247 Trifolium pratense HOM05D000343 ORTHO05D009884 3.2e-10 68.2 74 52.7
Os03g0388100 Oryza sativa ssp. japonica HOM05D000343 ORTHO05D009884 4.2e-10 67.8 72 47.2
Pp3c18_10710 Physcomitrium patens HOM05D000343 ORTHO05D002777 1.2e-09 66.2 76 47.4
HPP92_019306 Vanilla planifolia HOM05D000343 ORTHO05D009884 1.2e-09 66.2 71 52.1
Peaxi162Scf00001g00124 Petunia axillaris HOM05D000343 ORTHO05D009884 1.6e-09 65.9 57 59.6
Mapoly0071s0034 Marchantia polymorpha HOM05D000343 ORTHO05D002777 2.1e-09 65.5 74 45.9
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 2.7e-09 65.1 76 47.4
Zm00001eb327860 Zea mays HOM05D000343 ORTHO05D009884 6.1e-09 63.9 71 47.9
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 1.4e-08 62.8 76 46.1
Glyma.15G053500 Glycine max HOM05D000343 ORTHO05D009884 3.0e-08 61.6 74 47.3
AagrBONN_evm.TU.Sc2ySwM_117.4043 Anthoceros agrestis HOM05D000208 ORTHO05D000130 3.9e-08 61.2 77 48.1
CDE05G0554 Ceratophyllum demersum HOM05D000391 ORTHO05D000293 3.9e-08 61.2 74 45.9
SMO011G0027 Selaginella moellendorffii HOM05D000343 ORTHO05D002777 6.7e-08 60.5 76 43.4
CBR_g20392 Chara braunii HOM05D000343 ORTHO05D002777 5.7e-07 57.4 74 44.6
Glyma.08G179000 Glycine max HOM05D000343 ORTHO05D009884 7.4e-07 57.0 74 45.9
Os07g0623200 Oryza sativa ssp. japonica HOM05D000343 ORTHO05D009884 7.4e-07 57.0 71 45.1
Medtr7g116990 Medicago truncatula HOM05D000343 ORTHO05D009884 9.7e-07 56.6 74 43.2
Peaxi162Scf00152g01020 Petunia axillaris HOM05D000343 ORTHO05D009884 4.8e-06 54.3 57 54.4


User provided reference genes

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