Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 9.6e-218 760.0 417 100.0
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.9e-189 666.0 483 79.9
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 4.7e-188 661.4 483 78.5
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 8.9e-131 471.1 487 57.9
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 4.4e-130 468.8 485 52.8
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 9.2e-128 461.1 486 54.3
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 2.1e-127 459.9 484 56.6
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 6.6e-126 454.9 488 53.3
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 1.1e-125 454.1 485 56.3
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 1.5e-125 453.8 486 56.4
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 6.9e-123 444.9 486 54.5
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 3.4e-122 442.6 483 49.9
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 7.6e-122 441.4 494 51.2
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 2.4e-120 436.4 489 49.5
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 5.4e-120 435.3 489 52.4
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 4.6e-119 432.2 492 49.2
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 5.6e-117 425.2 491 50.5
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 1.4e-115 420.6 497 52.7
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 3.1e-115 419.5 493 51.7
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.5e-114 417.2 483 52.2
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 2.0e-114 416.8 489 49.5
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 4.5e-114 415.6 483 52.2
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.3e-113 414.1 483 52.0
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 2.9e-113 412.9 492 48.2
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 6.4e-113 411.8 489 51.1
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 4.2e-112 409.1 491 46.4
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 5.4e-112 408.7 491 46.6
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 2.1e-111 406.8 490 51.2
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 4.6e-111 405.6 491 46.0
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 8.7e-110 401.4 473 49.3
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 2.8e-108 396.4 484 47.1
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 3.4e-106 389.4 489 44.8
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 8.4e-105 384.8 486 44.9
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 1.1e-104 384.4 503 45.1
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 1.1e-104 384.4 503 45.1
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 4.2e-104 382.5 487 45.4
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 7.1e-104 381.7 483 45.8
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 2.3e-102 376.7 484 51.4
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 9.6e-101 371.3 484 45.2
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 1.1e-99 367.9 489 48.5
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 1.1e-99 367.9 480 46.0
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 1.5e-98 364.0 482 50.0
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 2.0e-98 363.6 481 46.2
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 7.6e-98 361.7 487 43.9
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 1.7e-97 360.5 491 46.4
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 2.2e-97 360.1 478 44.6
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 4.9e-97 359.0 295 61.0
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 1.1e-96 357.8 480 47.5
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 1.4e-96 357.5 479 45.5
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 7.1e-96 355.1 468 49.1
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 9.3e-96 354.8 475 43.6
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 1.6e-95 354.0 500 46.2
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 7.9e-95 351.7 482 45.0
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 1.3e-94 350.9 487 44.6
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.3e-94 350.1 427 49.9
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 6.7e-94 348.6 481 48.2
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 1.1e-93 347.8 483 44.9
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 5.7e-93 345.5 491 46.2
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 5.7e-93 345.5 491 46.2
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 1.6e-92 344.0 493 42.6
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 2.0e-90 337.0 327 53.8
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 1.7e-89 334.0 487 44.4
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.2e-89 333.6 495 45.9
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 3.8e-89 332.8 489 46.4
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 5.0e-89 332.4 329 55.3
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 6.5e-89 332.0 491 44.0
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 1.1e-88 331.3 499 41.1
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 4.2e-88 329.3 499 42.3
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 5.5e-88 328.9 488 45.1
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 1.2e-87 327.8 420 45.0
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 3.6e-87 326.2 329 54.1
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 4.6e-87 325.9 375 48.8
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 3.0e-86 323.2 490 43.9
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 5.1e-86 322.4 481 41.4
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 6.7e-86 322.0 482 43.6
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 4.3e-85 319.3 287 64.1
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 7.4e-85 318.5 481 44.9
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.7e-84 316.2 487 40.7
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.2e-84 315.1 291 63.2
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.1e-83 314.7 487 40.5
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 3.1e-83 313.2 309 57.9
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 9.1e-83 311.6 499 41.1
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.2e-82 311.2 477 46.3
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.5e-82 310.8 488 45.3
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.9e-82 308.9 481 43.7
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.3e-81 307.8 481 44.3
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 3.8e-81 306.2 479 45.9
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 6.5e-81 305.4 500 40.2
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 1.4e-80 304.3 480 43.8
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 2.5e-80 303.5 481 42.4
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 5.5e-80 302.4 483 44.5
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 9.4e-80 301.6 479 39.7
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 1.6e-79 300.8 395 46.8
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 2.7e-79 300.1 482 41.3
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 2.3e-78 297.0 470 40.4
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 5.1e-78 295.8 288 60.1
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 1.5e-77 294.3 499 37.3
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 5.7e-77 292.4 499 38.1
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 7.4e-77 292.0 385 46.0
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 1.3e-76 291.2 502 39.0
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.7e-76 289.7 341 49.0
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 6.9e-75 285.4 488 42.4
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 6.9e-75 285.4 351 51.0
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 1.0e-73 281.6 505 37.4
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 5.0e-73 279.3 494 37.4
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 4.2e-72 276.2 477 41.1
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 9.4e-72 275.0 481 37.2
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 1.2e-71 274.6 449 37.6
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.1e-71 273.9 484 40.9
Gohir.A07G223200 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.4e-70 271.2 489 35.8
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.8e-70 268.5 432 40.3
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 4.4e-69 266.2 510 37.6
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.3e-68 264.6 496 35.9
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 6.3e-68 262.3 489 37.4
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.6e-66 257.7 484 41.7
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.6e-66 257.7 484 41.7
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 3.5e-66 256.5 349 48.1
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.5e-64 250.4 447 41.8
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.0e-63 245.4 480 39.6
BcaB06g27513 Brassica carinata HOM05D004871 ORTHO05D005755 3.0e-62 243.4 491 37.9
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 9.7e-61 238.4 481 40.5
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 1.3e-60 238.0 297 46.5
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 1.7e-60 237.7 415 39.3
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 7.0e-59 232.3 304 42.4
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.7e-57 227.6 488 39.8
Actinidia35771 Actinidia chinensis HOM05D004871 ORTHO05D005755 6.1e-55 219.2 304 46.1
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 2.7e-50 203.8 217 51.2
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.9e-46 188.7 241 45.2
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 3.4e-45 186.8 464 32.3
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 3.5e-42 176.8 164 70.1
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.3e-41 174.9 165 55.2
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 1.1e-40 171.8 404 39.6
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.6e-39 167.9 164 65.2
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.5e-37 161.4 156 56.4
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.8e-35 154.5 174 49.4
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.2e-35 153.7 227 40.5
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 7.3e-32 142.5 150 50.7
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 9.5e-32 142.1 153 51.6
Cc00_g26710 Coffea canephora HOM05D004871 ORTHO05D005755 1.6e-31 141.4 300 34.7
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 2.3e-30 137.5 126 52.4
ATR0589G064 Amborella trichopoda HOM05D004871 ORTHO05D005755 7.5e-29 132.5 296 36.8
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 9.2e-27 125.6 82 75.6
HanXRQChr07g0188231 Helianthus annuus HOM05D004871 ORTHO05D005755 1.2e-23 115.2 149 40.3
Rhsim08G0180400 Rhododendron simsii HOM05D001576 ORTHO05D000401 3.6e-23 113.6 104 54.8
ATR0762G040 Amborella trichopoda HOM05D004871 ORTHO05D005755 1.4e-22 111.7 260 36.2
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.3e-20 105.1 67 76.1
TAR314G0001 Trochodendron aralioides HOM05D004871 ORTHO05D005755 5.1e-17 93.2 130 41.5
FAN14G0631 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.5e-16 91.7 74 60.8
Nitab4.5_0007441g0020 Nicotiana tabacum HOM05D004871 ORTHO05D005755 1.6e-15 88.2 80 55.0
Sc23g0005220 Simmondsia chinensis HOM05D002813 ORTHO05D003203 2.7e-10 70.9 320 28.8
TAR314G0006 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.5e-10 70.5 86 44.2
Solyc02g086440.4 Solanum lycopersicum HOM05D004871 ORTHO05D005755 2.5e-08 64.3 76 52.6
CAN.G955.3 Capsicum annuum HOM05D002125 ORTHO05D002105 3.3e-08 63.9 229 29.7
CsaV3_3G033360 Cucumis sativus L. HOM05D002125 ORTHO05D002105 2.8e-07 60.8 231 28.6
Eucgr.K02937 Eucalyptus grandis HOM05D002125 ORTHO05D002105 6.2e-07 59.7 227 29.1
QL01p025894 Quercus lobata HOM05D002125 ORTHO05D002105 6.2e-07 59.7 226 27.0
CANSAT54G1695 Cannabis sativa HOM05D002125 ORTHO05D002105 8.1e-07 59.3 228 26.8
GSVIVG01030257001 Vitis vinifera HOM05D002125 ORTHO05D002105 1.1e-06 58.9 229 28.4
Ah.08g209960 Amaranthus hybridus HOM05D002125 ORTHO05D002105 2.4e-06 57.8 284 28.5
Psat3g012240 Pisum sativum HOM05D001219 ORTHO05D001017 2.4e-06 57.8 289 26.6
EL10Ac7g16789 Beta vulgaris HOM05D002125 ORTHO05D002105 4.0e-06 57.0 230 28.3
MD13G1179300 Malus domestica HOM05D002762 ORTHO05D004643 5.2e-06 56.6 345 24.1
Zm00001eb249570 Zea mays HOM05D002503 ORTHO05D002810 5.2e-06 56.6 208 28.4
Nitab4.5_0007441g0040 Nicotiana tabacum HOM05D004871 ORTHO05D005755 6.9e-06 56.2 40 62.5
AUR62013695 Chenopodium quinoa HOM05D002503 ORTHO05D002810 9.0e-06 55.8 270 25.2
SalBow2G0360 Salvia bowleyana HOM05D002762 ORTHO05D004643 9.0e-06 55.8 271 28.4
SalBow2G3267 Salvia bowleyana HOM05D002762 ORTHO05D004643 9.0e-06 55.8 271 28.4
HPP92_027432 Vanilla planifolia HOM05D002503 ORTHO05D002810 9.0e-06 55.8 197 27.4


User provided reference genes

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