Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K03492 Eucalyptus grandis HOM05D002087 ORTHO05D002101 3.1e-48 194.9 104 100.0
Eucgr.H01103 Eucalyptus grandis HOM05D002087 ORTHO05D002101 7.4e-18 94.0 104 58.7
Duzib133G1126 Durio zibethinus HOM05D002087 ORTHO05D002101 1.6e-17 92.8 100 53.0
Gohir.D08G086300 Gossypium hirsutum HOM05D002087 ORTHO05D002101 2.2e-17 92.4 100 54.0
Gohir.A08G076800 Gossypium hirsutum HOM05D002087 ORTHO05D002101 3.7e-17 91.7 100 53.0
Gorai.004G090700 Gossypium raimondii HOM05D002087 ORTHO05D002101 8.2e-17 90.5 100 53.0
Gohir.A08G076700 Gossypium hirsutum HOM05D002087 ORTHO05D002101 1.1e-16 90.1 100 53.0
Gorai.004G090800 Gossypium raimondii HOM05D002087 ORTHO05D002101 1.4e-16 89.7 100 52.0
Eucgr.H01104 Eucalyptus grandis HOM05D002087 ORTHO05D002101 1.8e-16 89.4 104 56.7
QL12p028285 Quercus lobata HOM05D002087 ORTHO05D002101 1.8e-16 89.4 102 52.9
Duzib211G0093 Durio zibethinus HOM05D002087 ORTHO05D002101 4.1e-16 88.2 100 53.0
Gohir.D08G086400 Gossypium hirsutum HOM05D002087 ORTHO05D002101 1.2e-15 86.7 100 51.0
Duzib138G0723 Durio zibethinus HOM05D002087 ORTHO05D002101 1.5e-15 86.3 100 51.0
Prupe.8G263100 Prunus persica HOM05D002087 ORTHO05D002101 4.5e-15 84.7 100 51.0
Thecc.01G302000 Theobroma cacao HOM05D002087 ORTHO05D002101 4.5e-15 84.7 100 54.0
CiPaw.07G110400 Carya illinoinensis HOM05D002087 ORTHO05D002101 2.2e-14 82.4 104 51.9
Haze_04952 Corylus avellana HOM05D002087 ORTHO05D002101 2.9e-14 82.0 104 51.0
Ciclev10023029m.g Citrus clementina HOM05D002087 ORTHO05D002101 3.8e-14 81.6 100 51.0
Cfa005900 Carpinus fangiana HOM05D002087 ORTHO05D002101 5.0e-14 81.3 104 51.9
Glyma.10G017600 Glycine max HOM05D002087 ORTHO05D002101 2.5e-13 79.0 102 51.0
Glyma.02G017100 Glycine max HOM05D002087 ORTHO05D002101 3.2e-13 78.6 102 52.0
MD03G1289900 Malus domestica HOM05D002087 ORTHO05D002101 4.2e-13 78.2 100 45.0
Sed0008157 Sechium edule HOM05D002087 ORTHO05D002101 9.4e-13 77.0 102 44.1
PGR119G0329 Punica granatum HOM05D002087 ORTHO05D002101 1.2e-12 76.6 104 51.0
Lj5g0005721 Lotus japonicus HOM05D002087 ORTHO05D002101 6.1e-12 74.3 96 52.1
COL.COLO4_23330 Corchorus olitorius HOM05D002087 ORTHO05D002101 1.0e-11 73.6 100 49.0
Cpa.g.sc9.251 Carica papaya HOM05D002087 ORTHO05D002101 1.4e-11 73.2 104 47.1
Dinv19683 Davidia involucrata HOM05D002087 ORTHO05D002101 1.4e-11 73.2 102 50.0
Potri.002G203500 Populus trichocarpa HOM05D002087 ORTHO05D002101 1.4e-11 73.2 101 49.5
TPR.G39792 Trifolium pratense HOM05D002087 ORTHO05D002101 1.4e-11 73.2 102 47.1
TPR.G9639 Trifolium pratense HOM05D002087 ORTHO05D002101 1.8e-11 72.8 102 46.1
Medtr7g108745 Medicago truncatula HOM05D002087 ORTHO05D002101 3.0e-11 72.0 97 48.5
CiPaw.08G094400 Carya illinoinensis HOM05D002087 ORTHO05D002101 3.9e-11 71.6 104 45.2
MELO3C015995.2 Cucumis melo HOM05D002087 ORTHO05D002101 3.9e-11 71.6 106 43.4
CAN.G472.12 Capsicum annuum HOM05D002087 ORTHO05D002101 5.1e-11 71.2 102 45.1
Eucgr.H01105 Eucalyptus grandis HOM05D002087 ORTHO05D002101 6.7e-11 70.9 98 48.0
Gohir.A08G042300 Gossypium hirsutum HOM05D002087 ORTHO05D002101 6.7e-11 70.9 95 49.5
Gorai.004G052200 Gossypium raimondii HOM05D002087 ORTHO05D002101 6.7e-11 70.9 93 46.2
TAR633G2750 Trochodendron aralioides HOM05D002087 ORTHO05D002101 6.7e-11 70.9 103 46.6
Actinidia25806 Actinidia chinensis HOM05D002087 ORTHO05D002101 8.8e-11 70.5 97 49.5
CSS0043962 Camellia sinensis var. sinensis HOM05D002087 ORTHO05D002101 8.8e-11 70.5 102 47.1
CARHR002140 Cardamine hirsuta HOM05D002087 ORTHO05D002101 8.8e-11 70.5 104 46.2
Sp1g01800 Schrenkiella parvula HOM05D002087 ORTHO05D002101 8.8e-11 70.5 96 49.0
vmacro02442 Vaccinium macrocarpon HOM05D002087 ORTHO05D002101 8.8e-11 70.5 96 49.0
Phvul.007G218700 Phaseolus vulgaris HOM05D002087 ORTHO05D002101 1.1e-10 70.1 102 49.0
Gohir.D08G052100 Gossypium hirsutum HOM05D002087 ORTHO05D002101 1.5e-10 69.7 93 45.2
Gohir.D08G138900 Gossypium hirsutum HOM05D002087 ORTHO05D002101 1.5e-10 69.7 100 44.0
Gorai.004G142600 Gossypium raimondii HOM05D002087 ORTHO05D002101 1.5e-10 69.7 100 44.0
Medtr7g108735 Medicago truncatula HOM05D002087 ORTHO05D002101 1.5e-10 69.7 103 47.6
Sed0009339 Sechium edule HOM05D002087 ORTHO05D002101 1.5e-10 69.7 106 43.4
CSS0024122 Camellia sinensis var. sinensis HOM05D002087 ORTHO05D002101 2.0e-10 69.3 100 48.0
CSS0040472 Camellia sinensis var. sinensis HOM05D002087 ORTHO05D002101 2.0e-10 69.3 100 48.0
Manes.05G061300 Manihot esculenta HOM05D002087 ORTHO05D002101 2.0e-10 69.3 101 48.5
A10p01480 Brassica napus HOM05D002087 ORTHO05D002101 2.5e-10 68.9 104 44.2
Sabra02G0155900 Salix brachista HOM05D002087 ORTHO05D002101 2.5e-10 68.9 101 48.5
PGSC0003DMG400031788 Solanum tuberosum HOM05D002087 ORTHO05D002101 2.5e-10 68.9 100 46.0
COL.COLO4_13835 Corchorus olitorius HOM05D002087 ORTHO05D002101 5.7e-10 67.8 102 46.1
Rhsim13G0009300 Rhododendron simsii HOM05D002087 ORTHO05D002101 5.7e-10 67.8 102 45.1
Sopen09g030030 Solanum pennellii HOM05D002087 ORTHO05D002101 5.7e-10 67.8 100 46.0
FAN27G2215 Fragaria x ananassa HOM05D002087 ORTHO05D002101 7.4e-10 67.4 95 48.4
Ca_09179_v3 Cicer arietinum L. HOM05D002087 ORTHO05D002101 9.7e-10 67.0 97 47.4
Ca_30608_v3 Cicer arietinum L. HOM05D002087 ORTHO05D002101 9.7e-10 67.0 97 47.4
FvH4_2g25860 Fragaria vesca HOM05D002087 ORTHO05D002101 9.7e-10 67.0 95 48.4
FAN15G0957 Fragaria x ananassa HOM05D002087 ORTHO05D002101 9.7e-10 67.0 95 48.4
FAN24G1387 Fragaria x ananassa HOM05D002087 ORTHO05D002101 9.7e-10 67.0 95 48.4
Glyma.03G215000 Glycine max HOM05D002087 ORTHO05D002101 9.7e-10 67.0 102 49.0
PGR003G0016 Punica granatum HOM05D002087 ORTHO05D002101 9.7e-10 67.0 100 47.0
PGR044G0391 Punica granatum HOM05D002087 ORTHO05D002101 9.7e-10 67.0 100 47.0
AL1G12210 Arabidopsis lyrata HOM05D002087 ORTHO05D002101 1.3e-09 66.6 104 43.3
TAR362G1222 Trochodendron aralioides HOM05D002087 ORTHO05D002101 1.7e-09 66.2 103 47.6
VMungo0720G0684 Vigna mungo HOM05D002087 ORTHO05D002101 1.7e-09 66.2 102 48.0
Hma1.2p1_0494F.1_g165250 Hydrangea macrophylla HOM05D002087 ORTHO05D002101 2.2e-09 65.9 102 44.1
Lj1g0012830 Lotus japonicus HOM05D002087 ORTHO05D002101 2.2e-09 65.9 102 46.1
Rhsim01G0286200 Rhododendron simsii HOM05D002087 ORTHO05D002101 2.2e-09 65.9 100 45.0
Atru.chr5.1130 Acer truncatum HOM05D002087 ORTHO05D002101 2.8e-09 65.5 100 42.0
BcaC05g24591 Brassica carinata HOM05D002087 ORTHO05D002101 2.8e-09 65.5 104 42.3
C05p01450 Brassica napus HOM05D002087 ORTHO05D002101 2.8e-09 65.5 104 42.3
BolC5t28927H Brassica oleracea HOM05D002087 ORTHO05D002101 2.8e-09 65.5 104 42.3
Carub.0006s3478 Capsella rubella HOM05D002087 ORTHO05D002101 2.8e-09 65.5 107 45.8
Glyma.03G253200 Glycine max HOM05D002087 ORTHO05D002101 2.8e-09 65.5 102 46.1
Nitab4.5_0007333g0010 Nicotiana tabacum HOM05D002087 ORTHO05D002101 2.8e-09 65.5 102 46.1
Hund05435 Selenicereus undatus HOM05D002087 ORTHO05D002101 2.8e-09 65.5 100 48.0
AL6G50740 Arabidopsis lyrata HOM05D002087 ORTHO05D002101 3.7e-09 65.1 107 44.9
Solyc09g075210.3 Solanum lycopersicum HOM05D002087 ORTHO05D002101 3.7e-09 65.1 100 45.0
AT4G02380 Arabidopsis thaliana HOM05D002087 ORTHO05D002101 4.8e-09 64.7 107 43.9
CARHR250570 Cardamine hirsuta HOM05D002087 ORTHO05D002101 4.8e-09 64.7 104 44.2
Thhalv10009185m.g Eutrema salsugineum HOM05D002087 ORTHO05D002101 4.8e-09 64.7 104 43.3
Gohir.A08G117900 Gossypium hirsutum HOM05D002087 ORTHO05D002101 4.8e-09 64.7 100 41.0
Actinidia21040 Actinidia chinensis HOM05D002087 ORTHO05D002101 6.3e-09 64.3 94 45.7
BcaB03g15762 Brassica carinata HOM05D002087 ORTHO05D002101 6.3e-09 64.3 104 41.3
RcHm_v2.0_Chr6g0294191 Rosa chinensis HOM05D002087 ORTHO05D002101 6.3e-09 64.3 95 47.4
FAN20G0292 Fragaria x ananassa HOM05D002087 ORTHO05D002101 8.2e-09 63.9 95 47.4
Nitab4.5_0000116g0500 Nicotiana tabacum HOM05D002087 ORTHO05D002101 8.2e-09 63.9 102 45.1
BcaC03g16117 Brassica carinata HOM05D002087 ORTHO05D002101 1.1e-08 63.5 104 43.3
Thhalv10029091m.g Eutrema salsugineum HOM05D002087 ORTHO05D002101 1.1e-08 63.5 104 43.3
Peaxi162Scf00399g00518 Petunia axillaris HOM05D002087 ORTHO05D002101 1.1e-08 63.5 102 44.1
EL10Ac7g17530 Beta vulgaris HOM05D002087 ORTHO05D002101 1.4e-08 63.2 102 43.1
ClCG09G005640 Citrullus lanatus HOM05D002087 ORTHO05D002101 1.4e-08 63.2 106 42.5
Phvul.006G107900 Phaseolus vulgaris HOM05D002087 ORTHO05D002101 1.4e-08 63.2 102 45.1
VMungo1383G1626 Vigna mungo HOM05D002087 ORTHO05D002101 1.4e-08 63.2 102 45.1
GSVIVG01028033001 Vitis vinifera HOM05D002087 ORTHO05D002101 1.4e-08 63.2 104 45.2
Aa31LG5G2020 Aethionema arabicum HOM05D002087 ORTHO05D002101 1.8e-08 62.8 104 42.3
Ca_10326_v3 Cicer arietinum L. HOM05D002087 ORTHO05D002101 1.8e-08 62.8 97 44.3
CsaV3_7G029330 Cucumis sativus L. HOM05D002087 ORTHO05D002101 1.8e-08 62.8 106 41.5
Manes.01G220400 Manihot esculenta HOM05D002087 ORTHO05D002101 1.8e-08 62.8 100 47.0
THA.LOC104801278 Tarenaya hassleriana HOM05D002087 ORTHO05D002101 1.8e-08 62.8 106 46.2
BcaB01g02442 Brassica carinata HOM05D002087 ORTHO05D002101 2.4e-08 62.4 104 44.2
BcaC01g06764 Brassica carinata HOM05D002087 ORTHO05D002101 2.4e-08 62.4 104 44.2
Carub.0001s0193 Capsella rubella HOM05D002087 ORTHO05D002101 2.4e-08 62.4 104 39.4
Aa31LG1G9760 Aethionema arabicum HOM05D002087 ORTHO05D002101 3.1e-08 62.0 105 44.8
A02p24640 Brassica napus HOM05D002087 ORTHO05D002101 3.1e-08 62.0 104 42.3
Sp6g02260 Schrenkiella parvula HOM05D002087 ORTHO05D002101 3.1e-08 62.0 104 42.3
Thecc.04G287100 Theobroma cacao HOM05D002087 ORTHO05D002101 3.1e-08 62.0 104 44.2
TAR365G0110 Trochodendron aralioides HOM05D002087 ORTHO05D002101 4.1e-08 61.6 102 42.2
vmacro15151 Vaccinium macrocarpon HOM05D002087 ORTHO05D002101 4.1e-08 61.6 101 44.6
BcaC01g06763 Brassica carinata HOM05D002087 ORTHO05D002101 5.3e-08 61.2 104 43.3
BolC3t16079H Brassica oleracea HOM05D002087 ORTHO05D002101 5.3e-08 61.2 104 43.3
Glyma.19G211600 Glycine max HOM05D002087 ORTHO05D002101 5.3e-08 61.2 102 46.1
Manes.05G061400 Manihot esculenta HOM05D002087 ORTHO05D002101 5.3e-08 61.2 100 44.0
Nitab4.5_0002820g0100 Nicotiana tabacum HOM05D002087 ORTHO05D002101 5.3e-08 61.2 102 43.1
TPR.G33959 Trifolium pratense HOM05D002087 ORTHO05D002101 5.3e-08 61.2 103 44.7
TAR636G0371 Trochodendron aralioides HOM05D002087 ORTHO05D002101 5.3e-08 61.2 96 44.8
BcaB01g02443 Brassica carinata HOM05D002087 ORTHO05D002101 6.9e-08 60.8 104 43.3
C02p38880 Brassica napus HOM05D002087 ORTHO05D002101 6.9e-08 60.8 104 42.3
Gorai.011G191500 Gossypium raimondii HOM05D002087 ORTHO05D002101 9.1e-08 60.5 98 45.9
Oeu024406.1 Olea europaea HOM05D002087 ORTHO05D002101 9.1e-08 60.5 103 39.8
Oeu024408.1 Olea europaea HOM05D002087 ORTHO05D002101 9.1e-08 60.5 100 39.0
Potri.010G012100 Populus trichocarpa HOM05D002087 ORTHO05D002101 9.1e-08 60.5 99 45.5
AT1G02820 Arabidopsis thaliana HOM05D002087 ORTHO05D002101 1.2e-07 60.1 110 40.9
BcaB05g23621 Brassica carinata HOM05D002087 ORTHO05D002101 1.2e-07 60.1 104 43.3
A03p31110 Brassica napus HOM05D002087 ORTHO05D002101 1.2e-07 60.1 104 41.3
BraA03t12288Z Brassica rapa HOM05D002087 ORTHO05D002101 1.2e-07 60.1 104 41.3
Gohir.D10G171400 Gossypium hirsutum HOM05D002087 ORTHO05D002101 1.2e-07 60.1 98 45.9
Psat6g164600 Pisum sativum HOM05D002087 ORTHO05D002101 1.2e-07 60.1 103 45.6
BcaB01g02052 Brassica carinata HOM05D002087 ORTHO05D002101 1.5e-07 59.7 104 42.3
AUR62008681 Chenopodium quinoa HOM05D002087 ORTHO05D002101 1.5e-07 59.7 102 42.2
AUR62025562 Chenopodium quinoa HOM05D002087 ORTHO05D002101 1.5e-07 59.7 102 42.2
CsaV3_4G000880 Cucumis sativus L. HOM05D002087 ORTHO05D002101 1.5e-07 59.7 101 40.6
Peaxi162Scf00001g00412 Petunia axillaris HOM05D002087 ORTHO05D002101 1.5e-07 59.7 102 42.2
PGR031G1676 Punica granatum HOM05D002087 ORTHO05D002101 1.5e-07 59.7 105 40.0
Gohir.A10G165300 Gossypium hirsutum HOM05D002087 ORTHO05D002101 2.0e-07 59.3 98 44.9
Oeu048333.1 Olea europaea HOM05D002087 ORTHO05D002101 2.0e-07 59.3 102 42.2
BcaNung04047 Brassica carinata HOM05D002087 ORTHO05D002101 2.6e-07 58.9 104 42.3
A09p01850 Brassica napus HOM05D002087 ORTHO05D002101 2.6e-07 58.9 104 42.3
C09p01890 Brassica napus HOM05D002087 ORTHO05D002101 2.6e-07 58.9 104 42.3
BolC9t53124H Brassica oleracea HOM05D002087 ORTHO05D002101 2.6e-07 58.9 104 42.3
Lalb_Chr02g0146421 Lupinus albus HOM05D002087 ORTHO05D002101 2.6e-07 58.9 103 42.7
Potri.014G127700 Populus trichocarpa HOM05D002087 ORTHO05D002101 2.6e-07 58.9 101 45.5
Oeu011462.1 Olea europaea HOM05D002087 ORTHO05D002101 3.4e-07 58.5 102 41.2
Sc05g0003740 Simmondsia chinensis HOM05D002087 ORTHO05D002101 3.4e-07 58.5 102 40.2
Lsat_1_v5_gn_9_5460 Lactuca sativa HOM05D002087 ORTHO05D002101 4.5e-07 58.2 102 40.2
Psat3g021600 Pisum sativum HOM05D002087 ORTHO05D002101 4.5e-07 58.2 102 43.1
PGR044G0049 Punica granatum HOM05D002087 ORTHO05D002101 4.5e-07 58.2 104 41.3
Sabra14G0094900 Salix brachista HOM05D006093 ORTHO05D007652 4.5e-07 58.2 101 43.6
Actinidia14332 Actinidia chinensis HOM05D002087 ORTHO05D002101 7.7e-07 57.4 99 41.4
Oeu046672.1 Olea europaea HOM05D002087 ORTHO05D002101 7.7e-07 57.4 103 41.7
Oeu010665.1 Olea europaea HOM05D002087 ORTHO05D002101 1.3e-06 56.6 102 39.2
PGR003G0004 Punica granatum HOM05D002087 ORTHO05D002101 1.3e-06 56.6 104 40.4
Sabra10G0007800 Salix brachista HOM05D002087 ORTHO05D002101 1.3e-06 56.6 98 40.8
Atru.chr6.1998 Acer truncatum HOM05D002087 ORTHO05D002101 1.7e-06 56.2 95 42.1
SalBow1G8051 Salvia bowleyana HOM05D002087 ORTHO05D002101 1.7e-06 56.2 96 37.5
TWI59G1293 Tripterygium wilfordii HOM05D002087 ORTHO05D002101 1.7e-06 56.2 103 42.7
Ah.08g213310 Amaranthus hybridus HOM05D002087 ORTHO05D002101 2.2e-06 55.8 102 40.2
CAN.G1280.5 Capsicum annuum HOM05D002087 ORTHO05D002101 2.2e-06 55.8 95 41.1
CAN.G1989.10 Capsicum annuum HOM05D002087 ORTHO05D002101 2.2e-06 55.8 95 41.1
Ciclev10006308m.g Citrus clementina HOM05D002087 ORTHO05D002101 2.2e-06 55.8 103 44.7
Dinv29766 Davidia involucrata HOM05D002087 ORTHO05D002101 2.2e-06 55.8 103 41.7
Solyc06g009140.3 Solanum lycopersicum HOM05D002087 ORTHO05D002101 2.2e-06 55.8 103 38.8
PGSC0003DMG400017936 Solanum tuberosum HOM05D002087 ORTHO05D002101 2.2e-06 55.8 102 39.2
Duzib151G0120 Durio zibethinus HOM05D002087 ORTHO05D002101 2.9e-06 55.5 107 42.1
Sopen06g003900 Solanum pennellii HOM05D002087 ORTHO05D002101 2.9e-06 55.5 103 38.8
Nitab4.5_0004367g0080 Nicotiana tabacum HOM05D002087 ORTHO05D002101 3.8e-06 55.1 104 41.3
AT4G15910 Arabidopsis thaliana HOM05D002087 ORTHO05D002101 5.0e-06 54.7 103 40.8
HanXRQChr15g0465581 Helianthus annuus HOM05D002087 ORTHO05D002101 5.0e-06 54.7 102 37.3
Lsat_1_v5_gn_8_164161 Lactuca sativa HOM05D002087 ORTHO05D002101 5.0e-06 54.7 102 39.2
QL06p009975 Quercus lobata HOM05D002087 ORTHO05D002101 5.0e-06 54.7 101 41.6
QL93p2007_0079 Quercus lobata HOM05D002087 ORTHO05D002101 5.0e-06 54.7 101 41.6
TPR.G22147 Trifolium pratense HOM05D002087 ORTHO05D002101 5.0e-06 54.7 77 46.8
arahy.Tifrunner.gnm1.ann1.GPZ84J Arachis hypogaea HOM05D002087 ORTHO05D002101 6.5e-06 54.3 77 45.5
Lsat_1_v5_gn_9_5440 Lactuca sativa HOM05D002087 ORTHO05D002101 6.5e-06 54.3 91 38.5
TWI23G0703 Tripterygium wilfordii HOM05D002087 ORTHO05D002101 6.5e-06 54.3 101 41.6
FAN12G1374 Fragaria x ananassa HOM05D002087 ORTHO05D002101 8.5e-06 53.9 100 42.0
unitig_0.g671 Utricularia gibba HOM05D002087 ORTHO05D002101 8.5e-06 53.9 96 40.6


User provided reference genes

Program Settings