Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 0.0e+00 1651.3 901 100.0
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 4.8e-307 1057.7 922 64.4
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 1.7e-299 1032.7 919 65.7
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.1e-295 1020.0 923 65.4
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 4.2e-295 1018.1 902 63.6
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 1.6e-286 989.6 924 63.0
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 2.0e-284 982.6 905 61.8
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 4.5e-281 971.5 928 61.2
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 5.9e-281 971.1 919 61.5
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 5.9e-281 971.1 920 61.8
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 3.8e-280 968.4 929 61.0
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 4.3e-279 964.9 911 61.9
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 5.6e-279 964.5 916 61.9
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 4.7e-278 961.4 900 61.7
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 6.8e-277 957.6 866 63.3
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 5.8e-276 954.5 866 63.0
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 1.6e-273 946.4 913 60.8
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 1.7e-272 943.0 909 60.5
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 6.2e-270 934.5 876 62.2
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 1.8e-269 932.9 883 59.3
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 4.4e-268 928.3 916 60.4
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 2.2e-267 926.0 921 60.6
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.2e-267 926.0 916 60.0
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 4.9e-267 924.9 916 60.2
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 1.4e-266 923.3 915 59.2
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 2.4e-266 922.5 907 59.5
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 1.5e-263 913.3 909 58.3
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 4.3e-263 911.8 906 59.1
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 2.1e-262 909.4 941 56.5
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 1.5e-260 903.3 908 58.0
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 4.9e-259 898.3 907 59.2
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 7.1e-258 894.4 909 58.1
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 1.2e-257 893.6 906 58.7
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 6.0e-257 891.3 912 58.2
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 8.6e-256 887.5 919 57.7
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 8.6e-256 887.5 903 58.8
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 2.5e-255 885.9 916 59.0
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 3.3e-255 885.6 911 57.2
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 9.5e-255 884.0 909 58.4
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 1.2e-254 883.6 879 59.3
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 1.4e-253 880.2 900 57.8
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.8e-253 879.8 912 57.5
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 1.2e-252 877.1 913 56.4
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 2.0e-252 876.3 922 57.3
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 2.0e-252 876.3 907 58.0
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 2.9e-251 872.5 933 57.4
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 6.4e-251 871.3 911 57.1
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 8.4e-251 870.9 907 57.9
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 1.9e-250 869.8 835 60.4
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 2.4e-250 869.4 905 56.6
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 4.2e-250 868.6 925 57.0
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 4.6e-249 865.1 919 56.8
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 6.6e-248 861.3 908 57.0
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 2.5e-247 859.4 875 57.9
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 3.3e-247 859.0 916 58.1
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 4.3e-247 858.6 910 57.1
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 3.6e-246 855.5 877 56.7
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 3.1e-245 852.4 909 57.0
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 2.6e-244 849.4 917 56.4
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 3.4e-244 849.0 911 55.0
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 2.2e-243 846.3 882 56.9
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 5.4e-242 841.6 904 56.4
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 7.1e-242 841.3 916 55.9
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 7.8e-241 837.8 876 57.3
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 1.0e-240 837.4 862 58.0
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 2.3e-240 836.3 859 57.9
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 3.0e-240 835.9 909 56.3
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 1.3e-238 830.5 915 54.2
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 3.4e-236 822.4 878 56.4
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 1.7e-235 820.1 910 54.5
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 3.8e-235 818.9 867 57.0
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 1.1e-234 817.4 911 54.8
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.9e-234 816.6 923 53.7
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 5.4e-234 815.1 894 53.8
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 1.2e-233 813.9 921 54.4
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 2.1e-233 813.1 896 54.2
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 3.9e-232 808.9 813 57.2
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 5.6e-231 805.1 817 56.8
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 1.3e-230 803.9 885 53.4
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 6.4e-227 791.6 908 52.9
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 2.5e-226 789.6 890 52.8
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 4.2e-226 788.9 889 52.6
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 9.3e-226 787.7 733 62.1
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 2.7e-225 786.2 889 52.6
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 3.9e-224 782.3 883 52.9
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 1.1e-223 780.8 886 52.9
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 5.6e-223 778.5 801 58.1
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 1.8e-221 773.5 867 54.8
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 1.4e-218 763.8 881 54.4
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.2e-217 760.8 920 51.1
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 2.7e-217 759.6 886 52.6
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 1.8e-216 756.9 918 52.7
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 5.7e-215 751.9 875 54.2
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 8.2e-214 748.0 887 50.1
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 2.0e-212 743.4 910 50.2
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 7.9e-209 731.5 889 49.8
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 1.3e-206 724.2 892 50.0
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 2.8e-206 723.0 911 48.4
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 1.8e-205 720.3 898 48.6
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 3.1e-205 719.5 909 50.8
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 9.1e-205 718.0 867 50.4
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 1.6e-201 707.2 885 49.7
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 6.7e-200 701.8 903 48.4
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 4.8e-198 695.7 818 51.8
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 7.0e-197 691.8 913 47.6
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 1.7e-190 670.6 874 48.3
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 5.3e-189 665.6 867 47.9
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 1.2e-188 664.5 664 59.9
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 5.5e-186 655.6 899 47.7
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 8.0e-185 651.7 756 53.6
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 8.8e-184 648.3 830 48.6
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 4.5e-180 636.0 607 59.6
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 8.8e-176 621.7 569 62.0
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 2.6e-175 620.2 654 59.8
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 8.6e-171 605.1 894 45.2
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 8.0e-169 598.6 889 46.3
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 6.3e-166 589.0 895 45.7
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 3.9e-155 553.1 1106 38.4
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 6.0e-140 502.7 409 69.9
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 1.2e-137 495.0 825 43.0
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 1.1e-130 471.9 447 59.1
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 1.4e-125 454.9 782 41.7
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.3e-123 448.4 935 37.6
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 2.0e-119 434.5 1042 33.0
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 9.6e-114 415.6 459 54.7
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 8.4e-110 402.5 944 36.5
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 2.5e-109 401.0 985 35.2
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 1.4e-104 385.2 351 63.8
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 1.5e-103 381.7 349 62.5
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.1e-101 375.6 249 79.1
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.9e-101 374.8 278 71.6
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 1.4e-88 332.0 897 33.1
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 1.4e-88 332.0 897 33.1
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 2.2e-86 324.7 867 33.2
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 4.1e-80 303.9 995 28.9
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 1.3e-73 282.3 205 72.7
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 9.1e-72 276.2 251 60.2
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 3.2e-69 267.7 398 45.5
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 7.2e-69 266.5 407 45.2
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 3.6e-68 264.2 398 45.2
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 3.0e-67 261.2 417 44.6
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 1.3e-65 255.8 358 46.4
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 1.2e-63 249.2 819 31.6
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 1.6e-63 248.8 326 46.6
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 9.4e-61 239.6 397 43.6
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 3.6e-60 237.7 847 28.8
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.8e-57 228.0 330 50.3
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 1.2e-52 212.6 360 40.6
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 2.3e-51 208.4 301 45.5
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 6.8e-51 206.8 449 36.7
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 5.7e-50 203.8 177 67.8
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 1.7e-49 202.2 308 45.5
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.8e-48 198.7 179 60.3
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 1.4e-40 172.6 190 53.7
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 6.0e-39 167.2 255 42.7
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 1.5e-37 162.5 134 61.9
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 2.5e-37 161.8 303 39.6
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 3.3e-37 161.4 304 39.8
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 1.6e-36 159.1 166 57.2
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 8.9e-35 153.3 210 44.8
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 1.2e-34 152.9 131 60.3
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 4.9e-33 147.5 660 26.4
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 9.2e-32 143.3 971 24.6
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.6e-31 142.5 129 59.7
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 6.0e-31 140.6 271 39.5
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 6.0e-31 140.6 271 38.7
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.7e-30 139.0 189 43.4
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.2e-28 132.9 122 68.0
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 4.7e-20 104.4 815 23.8
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 3.2e-16 91.7 182 35.2
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 3.3e-13 81.6 63 65.1
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 4.3e-13 81.3 316 31.3
MBI19_g43566_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D244402 2.2e-09 68.9 127 43.3
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 8.4e-09 67.0 203 33.5
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 1.2e-07 63.2 72 48.6
CAN.G619.12 Capsicum annuum HOM05D000880 ORTHO05D004760 4.6e-07 61.2 61 52.5


User provided reference genes

Program Settings